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  1. ##Cytoscape 3 Data Import UX
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  3.  
  4. ### Scinario 1: Multiple Species Session
  5. =====================
  6.  
  7.  
  8. #### User Data
  9. * n mouse network files
  10. * m human network files
  11. * 1 expression data for mouse
  12. * 1 expression data for human
  13.  
  14.  
  15. ####Steps
  16. 1. File > Import > Network > File
  17. 2. Select a mouse network file and load
  18. 3. It creates a new (root) network
  19. 4. Load a second mouse network file
  20. 5. User will be asked to choose from the following options
  21. a. Add network existing network collection
  22. b. Create a new network collection
  23. 6. User should choose __a__ to add it to mouse network group
  24. 7. Reoeat 4-6 for n-2 times to create a mouse network collection sharing same root
  25. 8. Repeat the above for n networks for human
  26. 9. At this point, user have two network collections (root networks), one is for mouse, and the other one is for human.
  27. 10. File > Import > Table > File
  28. 11. Select the mouse expression data file and press OK
  29. 12. User will be asked the following:
  30. a. Map to selected network collection(s) - This means map to all networks under the selected roots
  31. b. Map to all networks
  32. c. Map to selected networks - User picks individual networks. Networks can exist in multiple roots
  33. 13. User selects __a__ and pick mouse network collection (mouse root network)
  34. 14. Expression data sets are mapped to all mouse networks.
  35. 15. Repeat 10-14 for human expression data file
  36.  
  37.  
  38. ### Questions
  39. * For step 12, if we have option b and c, can we cover a? User have to select all mouse networks manually, but still it gives the same result.
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