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  1.  
  2. C:\Users\Ripti\Dropbox\Peoples\CSS143\karenina>python setup.py install
  3. running install
  4. running bdist_egg
  5. running egg_info
  6. creating karenina_test.egg-info
  7. writing karenina_test.egg-info\PKG-INFO
  8. writing dependency_links to karenina_test.egg-info\dependency_links.txt
  9. writing entry points to karenina_test.egg-info\entry_points.txt
  10. writing top-level names to karenina_test.egg-info\top_level.txt
  11. writing manifest file 'karenina_test.egg-info\SOURCES.txt'
  12. reading manifest file 'karenina_test.egg-info\SOURCES.txt'
  13. reading manifest template 'MANIFEST.in'
  14. writing manifest file 'karenina_test.egg-info\SOURCES.txt'
  15. installing library code to build\bdist.win-amd64\egg
  16. running install_lib
  17. running build_py
  18. creating build
  19. creating build\lib
  20. creating build\lib\karenina
  21. copying karenina\experiment.py -> build\lib\karenina
  22. copying karenina\fit_timeseries.py -> build\lib\karenina
  23. copying karenina\individual.py -> build\lib\karenina
  24. copying karenina\perturbation.py -> build\lib\karenina
  25. copying karenina\process.py -> build\lib\karenina
  26. copying karenina\spatial_ornstein_uhlenbeck.py -> build\lib\karenina
  27. copying karenina\visualization.py -> build\lib\karenina
  28. copying karenina\__init__.py -> build\lib\karenina
  29. creating build\bdist.win-amd64
  30. creating build\bdist.win-amd64\egg
  31. creating build\bdist.win-amd64\egg\karenina
  32. copying build\lib\karenina\experiment.py -> build\bdist.win-amd64\egg\karenina
  33. copying build\lib\karenina\fit_timeseries.py -> build\bdist.win-amd64\egg\karenina
  34. copying build\lib\karenina\individual.py -> build\bdist.win-amd64\egg\karenina
  35. copying build\lib\karenina\perturbation.py -> build\bdist.win-amd64\egg\karenina
  36. copying build\lib\karenina\process.py -> build\bdist.win-amd64\egg\karenina
  37. copying build\lib\karenina\spatial_ornstein_uhlenbeck.py -> build\bdist.win-amd64\egg\karenina
  38. copying build\lib\karenina\visualization.py -> build\bdist.win-amd64\egg\karenina
  39. copying build\lib\karenina\__init__.py -> build\bdist.win-amd64\egg\karenina
  40. byte-compiling build\bdist.win-amd64\egg\karenina\experiment.py to experiment.cpython-36.pyc
  41. byte-compiling build\bdist.win-amd64\egg\karenina\fit_timeseries.py to fit_timeseries.cpython-36.pyc
  42. byte-compiling build\bdist.win-amd64\egg\karenina\individual.py to individual.cpython-36.pyc
  43. byte-compiling build\bdist.win-amd64\egg\karenina\perturbation.py to perturbation.cpython-36.pyc
  44. byte-compiling build\bdist.win-amd64\egg\karenina\process.py to process.cpython-36.pyc
  45. byte-compiling build\bdist.win-amd64\egg\karenina\spatial_ornstein_uhlenbeck.py to spatial_ornstein_uhlenbeck.cpython-36.pyc
  46. byte-compiling build\bdist.win-amd64\egg\karenina\visualization.py to visualization.cpython-36.pyc
  47. byte-compiling build\bdist.win-amd64\egg\karenina\__init__.py to __init__.cpython-36.pyc
  48. installing package data to build\bdist.win-amd64\egg
  49. running install_data
  50. creating build\bdist.win-amd64\egg\data
  51. creating build\bdist.win-amd64\egg\data\perturbations
  52. copying data\perturbations\add_x_mu_high.csv -> build\bdist.win-amd64\egg\data\perturbations
  53. copying data\perturbations\all_perturbations.tsv -> build\bdist.win-amd64\egg\data\perturbations
  54. copying data\perturbations\double_xyz_delta.csv -> build\bdist.win-amd64\egg\data\perturbations
  55. copying data\perturbations\double_z_delta.csv -> build\bdist.win-amd64\egg\data\perturbations
  56. copying data\perturbations\README.txt -> build\bdist.win-amd64\egg\data\perturbations
  57. copying data\perturbations\set_x_lambda_high.csv -> build\bdist.win-amd64\egg\data\perturbations
  58. copying data\perturbations\set_x_lambda_medium.csv -> build\bdist.win-amd64\egg\data\perturbations
  59. copying data\perturbations\set_x_lambda_small.csv -> build\bdist.win-amd64\egg\data\perturbations
  60. copying data\perturbations\set_x_mu_high.csv -> build\bdist.win-amd64\egg\data\perturbations
  61. copying data\perturbations\set_xyz_mu_high.csv -> build\bdist.win-amd64\egg\data\perturbations
  62. copying data\perturbations\set_xyz_mu_low.csv -> build\bdist.win-amd64\egg\data\perturbations
  63. copying data\perturbations\set_y_lambda_high.csv -> build\bdist.win-amd64\egg\data\perturbations
  64. copying data\perturbations\set_yz_lambda_high.csv -> build\bdist.win-amd64\egg\data\perturbations
  65. copying data\perturbations\set_z_lambda_zero.csv -> build\bdist.win-amd64\egg\data\perturbations
  66. copying data\perturbations\x_mu_low.csv -> build\bdist.win-amd64\egg\data\perturbations
  67. copying data\perturbations\xyz_lambda_low.csv -> build\bdist.win-amd64\egg\data\perturbations
  68. copying data\perturbations\xyz_lambda_zero.csv -> build\bdist.win-amd64\egg\data\perturbations
  69. copying data\perturbations\xyz_lambda_zero_alt_format.csv -> build\bdist.win-amd64\egg\data\perturbations
  70. copying data\perturbations\y_lambda_medium.csv -> build\bdist.win-amd64\egg\data\perturbations
  71. copying data\perturbations\yz_lambda_medium.csv -> build\bdist.win-amd64\egg\data\perturbations
  72. creating build\bdist.win-amd64\egg\EGG-INFO
  73. copying karenina_test.egg-info\PKG-INFO -> build\bdist.win-amd64\egg\EGG-INFO
  74. copying karenina_test.egg-info\SOURCES.txt -> build\bdist.win-amd64\egg\EGG-INFO
  75. copying karenina_test.egg-info\dependency_links.txt -> build\bdist.win-amd64\egg\EGG-INFO
  76. copying karenina_test.egg-info\entry_points.txt -> build\bdist.win-amd64\egg\EGG-INFO
  77. copying karenina_test.egg-info\top_level.txt -> build\bdist.win-amd64\egg\EGG-INFO
  78. zip_safe flag not set; analyzing archive contents...
  79. karenina.__pycache__.spatial_ornstein_uhlenbeck.cpython-36: module references __file__
  80. creating dist
  81. creating 'dist\karenina_test-0.0.1-py3.6.egg' and adding 'build\bdist.win-amd64\egg' to it
  82. removing 'build\bdist.win-amd64\egg' (and everything under it)
  83. Processing karenina_test-0.0.1-py3.6.egg
  84. creating c:\users\ripti\anaconda3\lib\site-packages\karenina_test-0.0.1-py3.6.egg
  85. Extracting karenina_test-0.0.1-py3.6.egg to c:\users\ripti\anaconda3\lib\site-packages
  86. Adding karenina-test 0.0.1 to easy-install.pth file
  87. Installing karenina-script.py script to C:\Users\Ripti\Anaconda3\Scripts
  88. Installing karenina.exe script to C:\Users\Ripti\Anaconda3\Scripts
  89.  
  90. Installed c:\users\ripti\anaconda3\lib\site-packages\karenina_test-0.0.1-py3.6.egg
  91. Processing dependencies for karenina-test==0.0.1
  92. Finished processing dependencies for karenina-test==0.0.1
  93.  
  94. C:\Users\Ripti\Dropbox\Peoples\CSS143\karenina>karenina -o ./test_run
  95. {'output': './test_run', 'pert_file_path': 'C:\\Users\\Ripti\\Anaconda3\\lib\\site-packages\\karenina_test-0.0.1-py3.6.egg\\data\\perturbations\\xyz_lambda_zero.csv', 'treatment_names': 'control,destabilizing_treatment', 'n_individuals': '35,35', 'n_timepoints': 10, 'perturbation_timepoint': 5, 'perturbation_duration': 100, 'interindividual_variation': 0.01, 'delta': 0.25, 'L': 0.2, 'fixed_start_pos': None}
  96. params lambda 0 update_mode replace axes x y z
  97.  
  98. Raw number of individuals from user: 35,35
  99. n_individuals.split(',') ['35', '35']
  100. **Experiment Design**
  101. treatments: ['control', 'destabilizing_treatment']
  102. n_individuals: [35, 35]
  103. interindividual_variation 0.01
  104. treatment_effects: [[], [{'start': 5, 'end': 105, 'params': {'lambda': 0.0}, 'update_mode': 'replace', 'axes': ['x', 'y', 'z']}]]
  105. individual_base_params: {'lambda': 0.2, 'delta': 0.25, 'interindividual_variation': 0.01}
  106. treatment_names: ['control', 'destabilizing_treatment']
  107. n_individuals: [35, 35]
  108. treatment_params: [[], [{'start': 5, 'end': 105, 'params': {'lambda': 0.0}, 'update_mode': 'replace', 'axes': ['x', 'y', 'z']}]]
  109. [35, 35]
  110. ['control', 'destabilizing_treatment']
  111. [[], [{'start': 5, 'end': 105, 'params': {'lambda': 0.0}, 'update_mode': 'replace', 'axes': ['x', 'y', 'z']}]]
  112. ['control', 'destabilizing_treatment']
  113. {'treatment_name': 'control', 'n_individuals': 35}
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  1096. [-0.00384782, -0.00384782, 0.03727835, 0.06798657, 0.01949377,
  1097. 0.03319804, 0.03785876, 0.11323397, 0.05689152, 0.02172952,
  1098. 0.00406243]]), array([[ 0.00680829, 0.00680829, 0.02565873, 0.09305685, 0.01829175,
  1099. 0.0422077 , -0.02363712, 0.09947803, 0.07823982, 0.12942611,
  1100. 0.1340739 ],
  1101. [ 0.00796749, 0.00796749, -0.00183952, 0.02709609, 0.00941703,
  1102. 0.05175601, 0.10953412, 0.2007169 , 0.12714829, 0.18246128,
  1103. 0.20850261],
  1104. [-0.0026093 , -0.0026093 , 0.01249918, -0.03937033, 0.00946948,
  1105. -0.13313891, -0.09174408, -0.02657849, -0.02048028, -0.14511832,
  1106. -0.12619787]]), array([[ 0.00952432, 0.00952432, -0.02952435, 0.02370957, 0.01539796,
  1107. -0.04170175, 0.04675487, 0.07775262, 0.03036119, -0.06396837,
  1108. -0.04223962],
  1109. [ 0.00924008, 0.00924008, -0.06429739, -0.11022668, 0.04883928,
  1110. 0.14403041, 0.11465353, 0.06847658, -0.00053796, 0.12330555,
  1111. 0.21037797],
  1112. [ 0.0050049 , 0.0050049 , -0.03977505, -0.00643985, -0.15050413,
  1113. -0.04351856, -0.01843023, 0.01758482, -0.01000629, 0.01237998,
  1114. 0.05158996]]), array([[-6.01168556e-03, -6.01168556e-03, 9.47304818e-02,
  1115. 1.07591695e-01, 1.56829567e-01, 5.53934212e-02,
  1116. -1.49715498e-02, 3.56489826e-02, -1.85851073e-02,
  1117. 2.51779711e-02, -1.10848284e-01],
  1118. [ 4.30011480e-05, 4.30011480e-05, -3.54239822e-02,
  1119. 2.11871414e-02, -5.81087460e-02, 1.75249114e-02,
  1120. -3.53236585e-02, 3.10378759e-02, 1.05932984e-02,
  1121. 6.59477647e-03, -1.46389690e-01],
  1122. [-9.24673647e-03, -9.24673647e-03, 2.79583347e-03,
  1123. 9.75030009e-04, -2.53885986e-02, -1.59819269e-02,
  1124. -1.62485504e-02, -1.19229719e-02, 1.15624104e-02,
  1125. 2.44841351e-02, -2.23556908e-02]])]
  1126. {'color': (0.5, 0, 0, 1), 'linewidth': 1.0, 'linestyle': '-'}
  1127.  
  1128. C:\Users\Ripti\Dropbox\Peoples\CSS143\karenina>pip uninstall karenina-test
  1129. Uninstalling karenina-test-0.0.1:
  1130. Would remove:
  1131. c:\users\ripti\anaconda3\lib\site-packages\karenina_test-0.0.1-py3.6.egg
  1132. c:\users\ripti\anaconda3\scripts\karenina-script.py
  1133. c:\users\ripti\anaconda3\scripts\karenina.exe
  1134. Proceed (y/n)? y
  1135. Successfully uninstalled karenina-test-0.0.1
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