uk_hospital_waves.m

#---------Load hospitalization data from our world in data.---------
pkg load io
C=csv2cell('c:\current-covid-patients-hospital.csv');

#---------Filter out data for a specific country.---------

%I=find(strcmp({C{:,1}},"Canada")==1)
#I=find(strcmp({C{:,1}},"United Kingdom")==1);
I=find(strcmp(C(2:end,1),"United Kingdom")==1);
C2=C(I,:);
#---------Calculate cummulative hospitalizations---------
C2(:,5)=num2cell(cumsum([C2{:,4}]));
##---------hospitalizations with average removed---------
#C2(:,6)=num2cell([C2{:,4}]./([C2{:,5}]./[size(C2,1)]));
##---------cumulative hospitalizations with average removed---------
#C2(:,7)=num2cell(cumsum([C2{:,6}]));
##----------select data range for a specif peak
d1=datestr('2022-05-31');
d2=datestr('2022-09-14');

#---------Convert String date to date object------------
C2(:,3)=cellfun(@(m) datestr(m),C2(:,3),'UniformOutput',false);
#---------For Plotting we need the datenum format.
C2(:,6)=cellfun(@(m) datenum(m),
                C2(:,3),'UniformOutput',false);

#---------Make function to filter date range------------
function y=date_rng(x,a,b)
  x2=datenum(x);
  a2=datenum(a);
  b2=datenum(b);
  y=x2>a2 & x2<b2;
end

dp=datestr('2022-07-15');
I_dp=find([cellfun(@(m) isequal(m,dp),
          C2(:,3),'UniformOutput',false){:}]);

#Maybe use is between function instead of date_rng https://www.mathworks.com/help/matlab/matlab_prog/compare-dates-and-time.html

#----------Remove data outside of date range (e.g. a specific peak
I2=find([cellfun(@(m) date_rng(m,d1,d2),
         C2(:,3),'UniformOutput',false){:}]);
C3=C2(I2,:);

#---------Subtract the min value so cumulative changes are only for this peak.---------
C3(:,7)=num2cell([C3{:,4}]-min([C3{:,4}]));
#---------cumulative hospitalizations with average removed---------
C3(:,8)=num2cell(cumsum([C3{:,4}]));
#----------select data range for a specif peak

#Use scale factors to put hospitalization levles on the same graph as cumulative levels.
m_dpd_max=max([C3{:,4}]); # hospitalization scale factor
m_dpd_min=min([C3{:,4}]); # hospitalization scale factor
m_dpd_detla=m_dpd_max-m_dpd_min;

m_cd_max=max([C3{:,8}]);  # cumulative scale factor


C3(:,8)=num2cell([C3{:,8}]*m_dpd_detla/m_cd_max+m_dpd_min);

plot([C3{:,6}],[C3{:,8}]);
hold on
plot([C3{:,6}],[C3{:,4}]);
datetick("x",'YYYY-mm-DD');
hold off
#datetick(gca)
#https://octave.sourceforge.io/octave/function/datetick.html