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misnomer001

kumtepe6

misnomer001
Feb 19th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. S1: anatolia
  5. indivname: anatolia.ind
  6. snpname: anatolia.snp
  7. genotypename: anatolia.geno
  8. popleft: left
  9. popright: right
  10. details: YES
  11. allsnps: YES
  12. inbreed: NO
  13. ## qpAdm version: 1520
  14. seed: 1769762924
  15. inbreed set NO
  16. inbreed set NO
  17. tmp: /tmp/fsx.7100
  18.  
  19. left pops:
  20. Turkey_Kumtepe_N.SG
  21. Turkey_N
  22. Armenia_EBA_KuraAraxes
  23.  
  24. right pops:
  25. Mbuti.DG
  26. ONG.SG
  27. EHG
  28. CHG
  29. England_Mesolithic
  30. Morocco_Iberomaurusian
  31. WSHG
  32. Tarim_EMBA1
  33. Mongolia_North_N
  34. Turkey_Epipaleolithic
  35. Iran_GanjDareh_N
  36. PPN
  37. Russia_Steppe_Eneolithic
  38.  
  39. codimension 1
  40. f4info:
  41. f4rank: 1 dof: 11 chisq: 10.473 tail: 0.488395966 dofdiff: 13 chisqdiff: -10.473 taildiff: 1
  42. B:
  43. scale 1.000
  44. ONG.SG 0.003
  45. EHG 0.102
  46. CHG -0.823
  47. England_Mesolithic 0.773
  48. Morocco_Iberomaurusian 0.762
  49. WSHG -0.395
  50. Tarim_EMBA1 -0.735
  51. Mongolia_North_N -0.015
  52. Turkey_Epipaleolithic 2.424
  53. Iran_GanjDareh_N -0.757
  54. PPN 1.639
  55. Russia_Steppe_Eneolithic -0.548
  56. A:
  57. scale 202.898
  58. Turkey_N 0.783
  59. Armenia_EBA_KuraAraxes -1.177
  60.  
  61.  
  62. full rank
  63. f4info:
  64. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 10.473 taildiff: 0.488395966
  65. B:
  66. scale 194.341 163.848
  67. ONG.SG 0.040 0.057
  68. EHG 0.390 0.191
  69. CHG -0.254 1.126
  70. England_Mesolithic 0.981 -0.384
  71. Morocco_Iberomaurusian 0.983 -0.368
  72. WSHG 0.628 1.232
  73. Tarim_EMBA1 -0.036 1.178
  74. Mongolia_North_N 0.701 0.672
  75. Turkey_Epipaleolithic 2.350 -1.864
  76. Iran_GanjDareh_N -0.098 1.155
  77. PPN 1.837 -1.001
  78. Russia_Steppe_Eneolithic 0.236 1.115
  79. A:
  80. scale 1.414 1.414
  81. Turkey_N 1.414 0.000
  82. Armenia_EBA_KuraAraxes 0.000 1.414
  83.  
  84.  
  85. best coefficients: 0.601 0.399
  86. totmean: 0.601 0.399
  87. boot mean: 0.600 0.400
  88. std. errors: 0.065 0.065
  89.  
  90. error covariance (* 1,000,000)
  91. 4166 -4166
  92. -4166 4166
  93.  
  94.  
  95. summ: Turkey_Kumtepe_N.SG 2 0.488396 0.600 0.400 4166 -4166 4166
  96.  
  97. fixed pat wt dof chisq tail prob
  98. 00 0 11 10.473 0.488396 0.601 0.399
  99. 01 1 12 50.856 9.877e-07 1.000 0.000
  100. 10 1 12 85.277 4.02692e-13 0.000 1.000
  101. best pat: 00 0.488396 - -
  102. best pat: 01 9.877e-07 chi(nested): 40.383 p-value for nested model: 2.08792e-10
  103.  
  104. coeffs: 0.601 0.399
  105.  
  106. ## dscore:: f_4(Base, Fit, Rbase, right2)
  107. ## genstat:: f_4(Base, Fit, right1, right2)
  108.  
  109. details: Turkey_N ONG.SG 0.000207 0.104703
  110. details: Armenia_EBA_KuraAraxes ONG.SG 0.000347 0.158165
  111. dscore: ONG.SG f4: 0.000263 Z: 0.131012
  112.  
  113. details: Turkey_N EHG 0.002007 0.871057
  114. details: Armenia_EBA_KuraAraxes EHG 0.001168 0.463587
  115. dscore: EHG f4: 0.001672 Z: 0.719339
  116.  
  117. details: Turkey_N CHG -0.001306 -0.612454
  118. details: Armenia_EBA_KuraAraxes CHG 0.006870 2.875221
  119. dscore: CHG f4: 0.001960 Z: 0.905700
  120.  
  121. details: Turkey_N England_Mesolithic 0.005049 1.907529
  122. details: Armenia_EBA_KuraAraxes England_Mesolithic -0.002341 -0.829419
  123. dscore: England_Mesolithic f4: 0.002097 Z: 0.794927
  124.  
  125. details: Turkey_N Morocco_Iberomaurusian 0.005057 2.705370
  126. details: Armenia_EBA_KuraAraxes Morocco_Iberomaurusian -0.002247 -1.125302
  127. dscore: Morocco_Iberomaurusian f4: 0.002139 Z: 1.143176
  128.  
  129. details: Turkey_N WSHG 0.003232 1.353395
  130. details: Armenia_EBA_KuraAraxes WSHG 0.007521 2.849827
  131. dscore: WSHG f4: 0.004945 Z: 2.038318
  132.  
  133. details: Turkey_N Tarim_EMBA1 -0.000187 -0.092916
  134. details: Armenia_EBA_KuraAraxes Tarim_EMBA1 0.007190 3.238805
  135. dscore: Tarim_EMBA1 f4: 0.002760 Z: 1.362407
  136.  
  137. details: Turkey_N Mongolia_North_N 0.003608 1.922627
  138. details: Armenia_EBA_KuraAraxes Mongolia_North_N 0.004104 1.990402
  139. dscore: Mongolia_North_N f4: 0.003806 Z: 2.009759
  140.  
  141. details: Turkey_N Turkey_Epipaleolithic 0.012094 4.400254
  142. details: Armenia_EBA_KuraAraxes Turkey_Epipaleolithic -0.011375 -3.896542
  143. dscore: Turkey_Epipaleolithic f4: 0.002718 Z: 0.993996
  144.  
  145. details: Turkey_N Iran_GanjDareh_N -0.000503 -0.270650
  146. details: Armenia_EBA_KuraAraxes Iran_GanjDareh_N 0.007047 3.522185
  147. dscore: Iran_GanjDareh_N f4: 0.002513 Z: 1.349456
  148.  
  149. details: Turkey_N PPN 0.009455 4.461514
  150. details: Armenia_EBA_KuraAraxes PPN -0.006108 -2.600333
  151. dscore: PPN f4: 0.003237 Z: 1.505961
  152.  
  153. details: Turkey_N Russia_Steppe_Eneolithic 0.001212 0.630897
  154. details: Armenia_EBA_KuraAraxes Russia_Steppe_Eneolithic 0.006806 3.228691
  155. dscore: Russia_Steppe_Eneolithic f4: 0.003447 Z: 1.781806
  156.  
  157. gendstat: Mbuti.DG ONG.SG 0.131
  158. gendstat: Mbuti.DG EHG 0.719
  159. gendstat: Mbuti.DG CHG 0.906
  160. gendstat: Mbuti.DG England_Mesolithic 0.795
  161. gendstat: Mbuti.DG Morocco_Iberomaurusian 1.143
  162. gendstat: Mbuti.DG WSHG 2.038
  163. gendstat: Mbuti.DG Tarim_EMBA1 1.362
  164. gendstat: Mbuti.DG Mongolia_North_N 2.010
  165. gendstat: Mbuti.DG Turkey_Epipaleolithic 0.994
  166. gendstat: Mbuti.DG Iran_GanjDareh_N 1.349
  167. gendstat: Mbuti.DG PPN 1.506
  168. gendstat: Mbuti.DG Russia_Steppe_Eneolithic 1.782
  169. gendstat: ONG.SG EHG 0.596
  170. gendstat: ONG.SG CHG 0.741
  171. gendstat: ONG.SG England_Mesolithic 0.687
  172. gendstat: ONG.SG Morocco_Iberomaurusian 0.874
  173. gendstat: ONG.SG WSHG 1.928
  174. gendstat: ONG.SG Tarim_EMBA1 1.245
  175. gendstat: ONG.SG Mongolia_North_N 2.017
  176. gendstat: ONG.SG Turkey_Epipaleolithic 0.884
  177. gendstat: ONG.SG Iran_GanjDareh_N 1.141
  178. gendstat: ONG.SG PPN 1.307
  179. gendstat: ONG.SG Russia_Steppe_Eneolithic 1.607
  180. gendstat: EHG CHG 0.122
  181. gendstat: EHG England_Mesolithic 0.160
  182. gendstat: EHG Morocco_Iberomaurusian 0.195
  183. gendstat: EHG WSHG 1.383
  184. gendstat: EHG Tarim_EMBA1 0.542
  185. gendstat: EHG Mongolia_North_N 0.990
  186. gendstat: EHG Turkey_Epipaleolithic 0.353
  187. gendstat: EHG Iran_GanjDareh_N 0.400
  188. gendstat: EHG PPN 0.637
  189. gendstat: EHG Russia_Steppe_Eneolithic 0.826
  190. gendstat: CHG England_Mesolithic 0.048
  191. gendstat: CHG Morocco_Iberomaurusian 0.075
  192. gendstat: CHG WSHG 1.178
  193. gendstat: CHG Tarim_EMBA1 0.374
  194. gendstat: CHG Mongolia_North_N 0.845
  195. gendstat: CHG Turkey_Epipaleolithic 0.267
  196. gendstat: CHG Iran_GanjDareh_N 0.275
  197. gendstat: CHG PPN 0.531
  198. gendstat: CHG Russia_Steppe_Eneolithic 0.712
  199. gendstat: England_Mesolithic Morocco_Iberomaurusian 0.016
  200. gendstat: England_Mesolithic WSHG 1.037
  201. gendstat: England_Mesolithic Tarim_EMBA1 0.251
  202. gendstat: England_Mesolithic Mongolia_North_N 0.666
  203. gendstat: England_Mesolithic Turkey_Epipaleolithic 0.200
  204. gendstat: England_Mesolithic Iran_GanjDareh_N 0.160
  205. gendstat: England_Mesolithic PPN 0.424
  206. gendstat: England_Mesolithic Russia_Steppe_Eneolithic 0.516
  207. gendstat: Morocco_Iberomaurusian WSHG 1.132
  208. gendstat: Morocco_Iberomaurusian Tarim_EMBA1 0.289
  209. gendstat: Morocco_Iberomaurusian Mongolia_North_N 0.825
  210. gendstat: Morocco_Iberomaurusian Turkey_Epipaleolithic 0.210
  211. gendstat: Morocco_Iberomaurusian Iran_GanjDareh_N 0.183
  212. gendstat: Morocco_Iberomaurusian PPN 0.502
  213. gendstat: Morocco_Iberomaurusian Russia_Steppe_Eneolithic 0.605
  214. gendstat: WSHG Tarim_EMBA1 -1.079
  215. gendstat: WSHG Mongolia_North_N -0.519
  216. gendstat: WSHG Turkey_Epipaleolithic -0.717
  217. gendstat: WSHG Iran_GanjDareh_N -1.028
  218. gendstat: WSHG PPN -0.643
  219. gendstat: WSHG Russia_Steppe_Eneolithic -0.658
  220. gendstat: Tarim_EMBA1 Mongolia_North_N 0.569
  221. gendstat: Tarim_EMBA1 Turkey_Epipaleolithic -0.015
  222. gendstat: Tarim_EMBA1 Iran_GanjDareh_N -0.129
  223. gendstat: Tarim_EMBA1 PPN 0.206
  224. gendstat: Tarim_EMBA1 Russia_Steppe_Eneolithic 0.371
  225. gendstat: Mongolia_North_N Turkey_Epipaleolithic -0.401
  226. gendstat: Mongolia_North_N Iran_GanjDareh_N -0.682
  227. gendstat: Mongolia_North_N PPN -0.265
  228. gendstat: Mongolia_North_N Russia_Steppe_Eneolithic -0.185
  229. gendstat: Turkey_Epipaleolithic Iran_GanjDareh_N -0.077
  230. gendstat: Turkey_Epipaleolithic PPN 0.188
  231. gendstat: Turkey_Epipaleolithic Russia_Steppe_Eneolithic 0.263
  232. gendstat: Iran_GanjDareh_N PPN 0.330
  233. gendstat: Iran_GanjDareh_N Russia_Steppe_Eneolithic 0.502
  234. gendstat: PPN Russia_Steppe_Eneolithic 0.096
  235.  
  236. removing /tmp/fsx.7100
  237. ##end of qpAdm: 3.877 seconds cpu 0.791 Mbytes in use
  238.  
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