Not a member of Pastebin yet?
Sign Up,
it unlocks many cool features!
- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- indivname: v54.1.p1_1240K_merged.ind
- snpname: v54.1.p1_1240K_merged.snp
- genotypename: v54.1.p1_1240K_merged.geno
- popleft: left.txt
- popright: right.txt
- inbreed: NO
- allsnps: YES
- details: YES
- ## qpAdm version: 1201
- seed: -2090694131
- read 1073741824 bytes
- read 2147483648 bytes
- read 3221225472 bytes
- read 4294967296 bytes
- read 5368709120 bytes
- read 6218084559 bytes
- packed geno read OK
- end of inpack
- left pops:
- Vedda_LK
- Onge.SG
- Indus_Periphery_medAASI
- Russia_Srubnaya_Alakul.SG
- right pops:
- Mbuti.DG
- EHG
- CHG
- WSHG
- Turkey_N
- Levant_PPN
- Iran_GanjDareh_N
- Mongolia_North_N
- China_Paleolithic
- Serbia_IronGates_Mesolithic
- 0 Vedda_LK 4
- 1 Onge.SG 6
- 2 Indus_Periphery_medAASI 3
- 3 Russia_Srubnaya_Alakul.SG 7
- 4 Mbuti.DG 14
- 5 EHG 16
- 6 CHG 2
- 7 WSHG 2
- 8 Turkey_N 33
- 9 Levant_PPN 14
- 10 Iran_GanjDareh_N 8
- 11 Mongolia_North_N 5
- 12 China_Paleolithic 2
- 13 Serbia_IronGates_Mesolithic 32
- jackknife block size: 0.050
- snps: 1150564 indivs: 148
- number of blocks for block jackknife: 714
- ## ncols: 1150564
- coverage: Vedda_LK 142456
- coverage: Onge.SG 1143397
- coverage: Indus_Periphery_medAASI 802231
- coverage: Russia_Srubnaya_Alakul.SG 1148418
- coverage: Mbuti.DG 1149711
- coverage: EHG 1113964
- coverage: CHG 1147700
- coverage: WSHG 856571
- coverage: Turkey_N 1139051
- coverage: Levant_PPN 630400
- coverage: Iran_GanjDareh_N 1057033
- coverage: Mongolia_North_N 1057835
- coverage: China_Paleolithic 1008603
- coverage: Serbia_IronGates_Mesolithic 1138678
- Effective number of blocks: 604.603
- numsnps used: 1150564
- codimension 1
- f4info:
- f4rank: 2 dof: 7 chisq: 4.902 tail: 0.671894863 dofdiff: 9 chisqdiff: -4.902 taildiff: 1
- B:
- scale 1.000 1.000
- EHG 1.313 0.594
- CHG 0.814 -0.880
- WSHG 0.761 0.163
- Turkey_N 1.344 0.180
- Levant_PPN 0.867 -0.509
- Iran_GanjDareh_N 0.591 -2.126
- Mongolia_North_N -0.543 0.556
- China_Paleolithic -0.539 0.860
- Serbia_IronGates_Mesolithic 1.595 1.409
- A:
- scale 512.979 2165.512
- Onge.SG -0.701 1.246
- Indus_Periphery_medAASI 0.336 -0.955
- Russia_Srubnaya_Alakul.SG 1.548 0.732
- full rank
- f4info:
- f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 4.902 taildiff: 0.671894863
- B:
- scale 695.147 1193.953 321.103
- EHG -0.953 0.862 1.374
- CHG -1.090 1.195 0.720
- WSHG -0.670 0.471 0.768
- Turkey_N -1.099 1.180 1.372
- Levant_PPN -1.045 0.877 0.792
- Iran_GanjDareh_N -1.318 1.786 0.387
- Mongolia_North_N 0.867 -0.477 -0.417
- China_Paleolithic 0.936 -0.767 -0.392
- Serbia_IronGates_Mesolithic -0.890 0.666 1.738
- A:
- scale 1.732 1.732 1.732
- Onge.SG 1.732 0.000 0.000
- Indus_Periphery_medAASI 0.000 1.732 0.000
- Russia_Srubnaya_Alakul.SG 0.000 0.000 1.732
- best coefficients: 0.390 0.553 0.057
- Jackknife mean: 0.390627542 0.552134074 0.057238384
- std. errors: 0.025 0.039 0.022
- error covariance (* 1,000,000)
- 609 -834 226
- -834 1542 -708
- 226 -708 482
- summ: Vedda_LK 3 0.671895 0.391 0.552 0.057 609 -834 226 1542 -708 ...
- 482
- fixed pat wt dof chisq tail prob
- 000 0 7 4.902 0.671895 0.390 0.553 0.057
- 001 1 8 11.188 0.191294 0.363 0.637 0.000
- 010 1 8 159.525 2.0102e-30 0.700 0.000 0.300
- 100 1 8 140.994 1.47385e-26 0.000 1.154 -0.154 infeasible
- 011 2 9 445.314 0 1.000 0.000 0.000
- 101 2 9 173.507 0 0.000 1.000 0.000
- 110 2 9 1708.823 0 0.000 0.000 1.000
- best pat: 000 0.671895 - -
- best pat: 001 0.191294 chi(nested): 6.285 p-value for nested model: 0.0121737
- best pat: 101 1.14672e-32 chi(nested): 162.319 p-value for nested model: 3.52293e-37
- coeffs: 0.390 0.553 0.057
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Onge.SG EHG -0.001370 -7.530542
- details: Indus_Periphery_medAASI EHG 0.000722 3.855952
- details: Russia_Srubnaya_Alakul.SG EHG 0.004278 24.165167
- dscore: EHG f4: 0.000107 Z: 0.744828
- details: Onge.SG CHG -0.001568 -8.249134
- details: Indus_Periphery_medAASI CHG 0.001000 5.392658
- details: Russia_Srubnaya_Alakul.SG CHG 0.002243 12.225265
- dscore: CHG f4: 0.000069 Z: 0.475289
- details: Onge.SG WSHG -0.000964 -4.767094
- details: Indus_Periphery_medAASI WSHG 0.000395 1.808559
- details: Russia_Srubnaya_Alakul.SG WSHG 0.002391 12.353406
- dscore: WSHG f4: -0.000022 Z: -0.134316
- details: Onge.SG Turkey_N -0.001581 -8.619305
- details: Indus_Periphery_medAASI Turkey_N 0.000989 5.452507
- details: Russia_Srubnaya_Alakul.SG Turkey_N 0.004271 23.893834
- dscore: Turkey_N f4: 0.000172 Z: 1.217377
- details: Onge.SG Levant_PPN -0.001503 -7.168976
- details: Indus_Periphery_medAASI Levant_PPN 0.000734 3.128324
- details: Russia_Srubnaya_Alakul.SG Levant_PPN 0.002465 12.158781
- dscore: Levant_PPN f4: -0.000041 Z: -0.228812
- details: Onge.SG Iran_GanjDareh_N -0.001897 -10.798480
- details: Indus_Periphery_medAASI Iran_GanjDareh_N 0.001496 8.742610
- details: Russia_Srubnaya_Alakul.SG Iran_GanjDareh_N 0.001205 7.046164
- dscore: Iran_GanjDareh_N f4: 0.000155 Z: 1.156432
- details: Onge.SG Mongolia_North_N 0.001247 6.757832
- details: Indus_Periphery_medAASI Mongolia_North_N -0.000399 -2.183188
- details: Russia_Srubnaya_Alakul.SG Mongolia_North_N -0.001297 -7.273680
- dscore: Mongolia_North_N f4: 0.000192 Z: 1.376042
- details: Onge.SG China_Paleolithic 0.001346 6.444923
- details: Indus_Periphery_medAASI China_Paleolithic -0.000642 -3.422819
- details: Russia_Srubnaya_Alakul.SG China_Paleolithic -0.001222 -6.830367
- dscore: China_Paleolithic f4: 0.000101 Z: 0.666166
- details: Onge.SG Serbia_IronGates_Mesolithic -0.001280 -6.388193
- details: Indus_Periphery_medAASI Serbia_IronGates_Mesolithic 0.000558 2.883644
- details: Russia_Srubnaya_Alakul.SG Serbia_IronGates_Mesolithic 0.005412 28.189766
- dscore: Serbia_IronGates_Mesolithic f4: 0.000116 Z: 0.765183
- gendstat: Mbuti.DG EHG 0.745
- gendstat: Mbuti.DG CHG 0.475
- gendstat: Mbuti.DG WSHG -0.134
- gendstat: Mbuti.DG Turkey_N 1.217
- gendstat: Mbuti.DG Levant_PPN -0.229
- gendstat: Mbuti.DG Iran_GanjDareh_N 1.156
- gendstat: Mbuti.DG Mongolia_North_N 1.376
- gendstat: Mbuti.DG China_Paleolithic 0.666
- gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 0.765
- gendstat: EHG CHG -0.266
- gendstat: EHG WSHG -0.902
- gendstat: EHG Turkey_N 0.552
- gendstat: EHG Levant_PPN -0.826
- gendstat: EHG Iran_GanjDareh_N 0.334
- gendstat: EHG Mongolia_North_N 0.590
- gendstat: EHG China_Paleolithic -0.040
- gendstat: EHG Serbia_IronGates_Mesolithic 0.084
- gendstat: CHG WSHG -0.529
- gendstat: CHG Turkey_N 0.771
- gendstat: CHG Levant_PPN -0.585
- gendstat: CHG Iran_GanjDareh_N 0.619
- gendstat: CHG Mongolia_North_N 0.756
- gendstat: CHG China_Paleolithic 0.186
- gendstat: CHG Serbia_IronGates_Mesolithic 0.325
- gendstat: WSHG Turkey_N 1.237
- gendstat: WSHG Levant_PPN -0.091
- gendstat: WSHG Iran_GanjDareh_N 1.068
- gendstat: WSHG Mongolia_North_N 1.297
- gendstat: WSHG China_Paleolithic 0.700
- gendstat: WSHG Serbia_IronGates_Mesolithic 0.878
- gendstat: Turkey_N Levant_PPN -1.368
- gendstat: Turkey_N Iran_GanjDareh_N -0.147
- gendstat: Turkey_N Mongolia_North_N 0.144
- gendstat: Turkey_N China_Paleolithic -0.486
- gendstat: Turkey_N Serbia_IronGates_Mesolithic -0.517
- gendstat: Levant_PPN Iran_GanjDareh_N 1.080
- gendstat: Levant_PPN Mongolia_North_N 1.239
- gendstat: Levant_PPN China_Paleolithic 0.723
- gendstat: Levant_PPN Serbia_IronGates_Mesolithic 0.925
- gendstat: Iran_GanjDareh_N Mongolia_North_N 0.254
- gendstat: Iran_GanjDareh_N China_Paleolithic -0.334
- gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.268
- gendstat: Mongolia_North_N China_Paleolithic -0.599
- gendstat: Mongolia_North_N Serbia_IronGates_Mesolithic -0.514
- gendstat: China_Paleolithic Serbia_IronGates_Mesolithic 0.098
- ##end of qpAdm: 95.937 seconds cpu 1246.953 Mbytes in use
Advertisement
Add Comment
Please, Sign In to add comment
