mingus:~ heyan_admin$ sct_testing
Will run through the following tests:
- sequentially: sct_deepseg_gm sct_deepseg_lesion sct_deepseg_sc
- in parallel with 4 jobs: sct_analyze_lesion sct_analyze_texture sct_apply_transfo sct_warp_template sct_resample sct_convert sct_image sct_maths sct_merge_images sct_compute_ernst_angle sct_compute_hausdorff_distance sct_compute_mtr sct_compute_mscc sct_compute_snr sct_concat_transfo sct_create_mask sct_crop_image sct_dice_coefficient sct_detect_pmj sct_dmri_compute_dti sct_dmri_concat_bvals sct_dmri_concat_bvecs sct_dmri_create_noisemask sct_dmri_compute_bvalue sct_dmri_moco sct_dmri_separate_b0_and_dwi sct_dmri_transpose_bvecs sct_extract_metric sct_flatten_sagittal sct_fmri_compute_tsnr sct_fmri_moco sct_get_centerline sct_label_utils sct_process_segmentation sct_propseg sct_register_multimodal sct_straighten_spinalcord sct_register_to_template sct_smooth_spinalcord sct_label_vertebrae
Checking sct_deepseg_gm.............................[OK]
Checking sct_deepseg_lesion.........................[OK]
Checking sct_deepseg_sc.............................[OK]
Checking sct_analyze_lesion.........................[OK]
Checking sct_analyze_texture........................[OK]
Checking sct_apply_transfo..........................[OK]
Checking sct_warp_template..........................[OK]
Checking sct_resample...............................[OK]
Checking sct_convert................................[OK]
Checking sct_image..................................[OK]
Checking sct_maths..................................[OK]
Checking sct_merge_images...........................[OK]
Checking sct_compute_ernst_angle....................[OK]
Checking sct_compute_hausdorff_distance.............[OK]
Checking sct_compute_mtr............................[OK]
Checking sct_compute_mscc...........................[OK]
Checking sct_compute_snr............................[OK]
Checking sct_concat_transfo.........................[OK]
Checking sct_create_mask............................[OK]
Checking sct_crop_image.............................[OK]
Checking sct_dice_coefficient.......................[OK]
Checking sct_detect_pmj.............................[OK]
Checking sct_dmri_compute_dti.......................[OK]
Checking sct_dmri_concat_bvals......................[OK]
Checking sct_dmri_concat_bvecs......................[OK]
Checking sct_dmri_create_noisemask..................[OK]
Checking sct_dmri_compute_bvalue....................[OK]
Checking sct_dmri_moco..............................[OK]
Checking sct_dmri_separate_b0_and_dwi...............[OK]
Checking sct_dmri_transpose_bvecs...................[OK]
Checking sct_extract_metric.........................[OK]
Checking sct_flatten_sagittal.......................[OK]
Checking sct_fmri_compute_tsnr......................[OK]
Checking sct_fmri_moco..............................[OK]
Checking sct_get_centerline.........................[OK]
Checking sct_label_utils............................[OK]
Checking sct_process_segmentation...................[FAIL]

   Will run in /private/var/folders/2k/mgtxf9nj3311pzmnywdd93fr0000gs/T/sct-20190610153306.278572-glacyt_f/sct_process_segmentation:
   ====================================================================================================
   sct_process_segmentation -i /Users/heyan_admin/sct_testing_data/t2/t2_seg.nii.gz -vertfile ./label/template/PAM50_levels.nii.gz -r 1 -angle-corr 1 -v 1
   ====================================================================================================

   Compute shape analysis:   0%|                          | 0/55 [00:00<?, ?iter/s]
Checking sct_propseg................................[OK]
Checking sct_register_multimodal....................[OK]
Checking sct_straighten_spinalcord..................[OK]
Checking sct_register_to_template...................[OK]
Checking sct_smooth_spinalcord......................[OK]
Checking sct_label_vertebrae........................[OK]
status: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0]
Failures: sct_process_segmentation
Finished! Elapsed time: 176s