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  1. == 2018-07-20 10:57:53,760 modules.py:648 DEBUG Current MODULEPATH: /opt/easybuild/modules/all/Core:/opt/easybuild/modules/all
  2. == 2018-07-20 10:57:53,760 modules.py:655 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
  3. == 2018-07-20 10:57:53,761 modules.py:655 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
  4. == 2018-07-20 10:57:53,761 modules.py:659 DEBUG Running module command '/opt/easybuild/lmod/lmod/libexec/lmod python load foss/2018a' from /mnt/ramdisk/seqtk/1.3/foss-2018a/seqtk-1.3
  5. == 2018-07-20 10:57:54,160 modules.py:665 DEBUG Output of module command '/opt/easybuild/lmod/lmod/libexec/lmod python load foss/2018a': stdout: os.environ["__LMOD_REF_COUNT_CPATH"] = "/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include:1;/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include:1;/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include:1;/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/include:1;/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/include:1;/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/include:1;/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/include:1;/opt/easybuild/software/Core/GCCcore/6.4.0/include:1";
  6. os.environ["CPATH"] = "/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include:/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/include:/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/include:/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/include:/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/include:/opt/easybuild/software/Core/GCCcore/6.4.0/include";
  7. os.environ["EBDEVELBINUTILS"] = "/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/easybuild/Compiler-GCCcore-6.4.0-binutils-2.28-easybuild-devel";
  8. os.environ["EBDEVELFFTW"] = "/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/easybuild/MPI-GCC-6.4.0-2.28-OpenMPI-2.1.2-FFTW-3.3.7-easybuild-devel";
  9. os.environ["EBDEVELFOSS"] = "/opt/easybuild/software/Core/foss/2018a/easybuild/Core-foss-2018a-easybuild-devel";
  10. os.environ["EBDEVELGCC"] = "/opt/easybuild/software/Core/GCC/6.4.0-2.28/easybuild/Core-GCC-6.4.0-2.28-easybuild-devel";
  11. os.environ["EBDEVELGCCCORE"] = "/opt/easybuild/software/Core/GCCcore/6.4.0/easybuild/Core-GCCcore-6.4.0-easybuild-devel";
  12. os.environ["EBDEVELHWLOC"] = "/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/easybuild/Compiler-GCCcore-6.4.0-hwloc-1.11.8-easybuild-devel";
  13. os.environ["EBDEVELNUMACTL"] = "/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/easybuild/Compiler-GCCcore-6.4.0-numactl-2.0.11-easybuild-devel";
  14. os.environ["EBDEVELOPENBLAS"] = "/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/easybuild/Compiler-GCC-6.4.0-2.28-OpenBLAS-0.2.20-easybuild-devel";
  15. os.environ["EBDEVELOPENMPI"] = "/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/easybuild/Compiler-GCC-6.4.0-2.28-OpenMPI-2.1.2-easybuild-devel";
  16. os.environ["EBDEVELSCALAPACK"] = "/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/easybuild/MPI-GCC-6.4.0-2.28-OpenMPI-2.1.2-ScaLAPACK-2.0.2-OpenBLAS-0.2.20-easybuild-devel";
  17. os.environ["EBROOTBINUTILS"] = "/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28";
  18. os.environ["EBROOTFFTW"] = "/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7";
  19. os.environ["EBROOTFOSS"] = "/opt/easybuild/software/Core/foss/2018a";
  20. os.environ["EBROOTGCC"] = "/opt/easybuild/software/Core/GCCcore/6.4.0";
  21. os.environ["EBROOTGCCCORE"] = "/opt/easybuild/software/Core/GCCcore/6.4.0";
  22. os.environ["EBROOTHWLOC"] = "/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8";
  23. os.environ["EBROOTNUMACTL"] = "/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11";
  24. os.environ["EBROOTOPENBLAS"] = "/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20";
  25. os.environ["EBROOTOPENMPI"] = "/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2";
  26. os.environ["EBROOTSCALAPACK"] = "/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20";
  27. os.environ["EBVERSIONBINUTILS"] = "2.28";
  28. os.environ["EBVERSIONFFTW"] = "3.3.7";
  29. os.environ["EBVERSIONFOSS"] = "2018a";
  30. os.environ["EBVERSIONGCC"] = "6.4.0";
  31. os.environ["EBVERSIONGCCCORE"] = "6.4.0";
  32. os.environ["EBVERSIONHWLOC"] = "1.11.8";
  33. os.environ["EBVERSIONNUMACTL"] = "2.0.11";
  34. os.environ["EBVERSIONOPENBLAS"] = "0.2.20";
  35. os.environ["EBVERSIONOPENMPI"] = "2.1.2";
  36. os.environ["EBVERSIONSCALAPACK"] = "2.0.2";
  37. os.environ["__LMOD_REF_COUNT_LD_LIBRARY_PATH"] = "/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib:1;/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib:1;/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib:1;/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib:1;/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/lib:1;/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/lib:1;/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/lib:1;/opt/easybuild/software/Core/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:1;/opt/easybuild/software/Core/GCCcore/6.4.0/lib64:1;/opt/easybuild/software/Core/GCCcore/6.4.0/lib:1";
  38. os.environ["LD_LIBRARY_PATH"] = "/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib:/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/lib:/opt/easybuild/software/Core/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/opt/easybuild/software/Core/GCCcore/6.4.0/lib64:/opt/easybuild/software/Core/GCCcore/6.4.0/lib";
  39. os.environ["__LMOD_REF_COUNT_LIBRARY_PATH"] = "/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib:1;/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib:1;/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib:1;/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib:1;/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/lib:1;/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/lib:1;/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/lib:1;/opt/easybuild/software/Core/GCCcore/6.4.0/lib64:1;/opt/easybuild/software/Core/GCCcore/6.4.0/lib:1";
  40. os.environ["LIBRARY_PATH"] = "/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib:/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/lib:/opt/easybuild/software/Core/GCCcore/6.4.0/lib64:/opt/easybuild/software/Core/GCCcore/6.4.0/lib";
  41. os.environ["__LMOD_REF_COUNT_LOADEDMODULES"] = "EasyBuild/develop:1;GCCcore/6.4.0:1;binutils/2.28:1;GCC/6.4.0-2.28:1;numactl/2.0.11:1;hwloc/1.11.8:1;OpenMPI/2.1.2:1;OpenBLAS/0.2.20:1;FFTW/3.3.7:1;ScaLAPACK/2.0.2-OpenBLAS-0.2.20:1;foss/2018a:1";
  42. os.environ["LOADEDMODULES"] = "EasyBuild/develop:GCCcore/6.4.0:binutils/2.28:GCC/6.4.0-2.28:numactl/2.0.11:hwloc/1.11.8:OpenMPI/2.1.2:OpenBLAS/0.2.20:FFTW/3.3.7:ScaLAPACK/2.0.2-OpenBLAS-0.2.20:foss/2018a";
  43. os.environ["__LMOD_REF_COUNT_MANPATH"] = "/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/share/man:1;/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/share/man:1;/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/share/man:1;/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/share/man:1;/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/share/man:1;/opt/easybuild/software/Core/GCCcore/6.4.0/share/man:1;/opt/easybuild/lmod/lmod/share/man:1";
  44. os.environ["MANPATH"] = "/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/share/man:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/share/man:/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/share/man:/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/share/man:/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/share/man:/opt/easybuild/software/Core/GCCcore/6.4.0/share/man:/opt/easybuild/lmod/lmod/share/man::";
  45. os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2:1;/opt/easybuild/modules/all/Compiler/GCC/6.4.0-2.28:1;/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0:1;/opt/easybuild/modules/all/Core:2;/opt/easybuild/modules/all:1";
  46. os.environ["MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2:/opt/easybuild/modules/all/Compiler/GCC/6.4.0-2.28:/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all";
  47. os.environ["__LMOD_REF_COUNT_PATH"] = "/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/bin:1;/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/bin:1;/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/bin:1;/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/sbin:1;/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/bin:1;/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/bin:1;/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/bin:1;/opt/easybuild/software/Core/GCCcore/6.4.0/bin:1;/opt/easybuild/EB-develop/easybuild-framework:1;/opt/ssh-ident:1;/usr/local/bin:1;/usr/bin:1;/bin:1;/usr/local/games:1;/usr/games:1";
  48. os.environ["PATH"] = "/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/bin:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/bin:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/bin:/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/sbin:/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/bin:/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/bin:/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/bin:/opt/easybuild/software/Core/GCCcore/6.4.0/bin:/opt/easybuild/EB-develop/easybuild-framework:/opt/ssh-ident:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games";
  49. os.environ["__LMOD_REF_COUNT_PKG_CONFIG_PATH"] = "/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib/pkgconfig:1;/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib/pkgconfig:1;/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib/pkgconfig:1;/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/lib/pkgconfig:1";
  50. os.environ["PKG_CONFIG_PATH"] = "/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib/pkgconfig:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib/pkgconfig:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib/pkgconfig:/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/lib/pkgconfig";
  51. os.environ["__LMOD_REF_COUNT__LMFILES_"] = "/opt/easybuild/modules/all/Core/EasyBuild/develop.lua:1;/opt/easybuild/modules/all/Core/GCCcore/6.4.0.lua:1;/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0/binutils/2.28.lua:1;/opt/easybuild/modules/all/Core/GCC/6.4.0-2.28.lua:1;/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0/numactl/2.0.11.lua:1;/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0/hwloc/1.11.8.lua:1;/opt/easybuild/modules/all/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2.lua:1;/opt/easybuild/modules/all/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20.lua:1;/opt/easybuild/modules/all/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7.lua:1;/opt/easybuild/modules/all/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20.lua:1;/opt/easybuild/modules/all/Core/foss/2018a.lua:1";
  52. os.environ["_LMFILES_"] = "/opt/easybuild/modules/all/Core/EasyBuild/develop.lua:/opt/easybuild/modules/all/Core/GCCcore/6.4.0.lua:/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0/binutils/2.28.lua:/opt/easybuild/modules/all/Core/GCC/6.4.0-2.28.lua:/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0/numactl/2.0.11.lua:/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0/hwloc/1.11.8.lua:/opt/easybuild/modules/all/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2.lua:/opt/easybuild/modules/all/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20.lua:/opt/easybuild/modules/all/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7.lua:/opt/easybuild/modules/all/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20.lua:/opt/easybuild/modules/all/Core/foss/2018a.lua";
  53. os.environ["_ModuleTable001_"] = "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";
  54. os.environ["_ModuleTable002_"] = "YSIsWyJmdWxsTmFtZSJdPSJGRlRXLzMuMy43IixbImxvYWRPcmRlciJdPTkscHJvcFQ9e30sWyJzdGFja0RlcHRoIl09MSxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0iRkZUVy8zLjMuNyIsfSxHQ0M9e1siZm4iXT0iL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29yZS9HQ0MvNi40LjAtMi4yOC5sdWEiLFsiZnVsbE5hbWUiXT0iR0NDLzYuNC4wLTIuMjgiLFsibG9hZE9yZGVyIl09NCxwcm9wVD17fSxbInN0YWNrRGVwdGgiXT0xLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJHQ0MvNi40LjAtMi4yOCIsfSxHQ0Njb3JlPXtbImZuIl09Ii9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL0NvcmUvR0NDY29yZS82LjQuMC5sdWEiLFsiZnVsbE5h";
  55. os.environ["_ModuleTable003_"] = "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";
  56. os.environ["_ModuleTable004_"] = "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";
  57. os.environ["_ModuleTable005_"] = "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";
  58. os.environ["_ModuleTable006_"] = "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";
  59. os.environ["_ModuleTable007_"] = "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";
  60. os.environ["_ModuleTable_Sz_"] = "7";
  61. ; stderr:
  62. == 2018-07-20 10:57:54,160 modules.py:1137 DEBUG Output found in stdout, seems like '/opt/easybuild/lmod/lmod/libexec/lmod python load foss/2018a' ran fine
  63. == 2018-07-20 10:57:54,162 modules.py:702 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib', '/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib', '/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib', '/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib', '/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/lib', '/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/lib', '/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/lib', '/opt/easybuild/software/Core/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0', '/opt/easybuild/software/Core/GCCcore/6.4.0/lib64', '/opt/easybuild/software/Core/GCCcore/6.4.0/lib'] to ['/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib', '/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib', '/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib', '/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib', '/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/lib', '/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/lib', '/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/lib', '/opt/easybuild/software/Core/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0', '/opt/easybuild/software/Core/GCCcore/6.4.0/lib64', '/opt/easybuild/software/Core/GCCcore/6.4.0/lib']
  64. == 2018-07-20 10:57:54,163 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib:/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/lib:/opt/easybuild/software/Core/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/opt/easybuild/software/Core/GCCcore/6.4.0/lib64:/opt/easybuild/software/Core/GCCcore/6.4.0/lib (previous value: '/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib:/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/lib:/opt/easybuild/software/Core/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/opt/easybuild/software/Core/GCCcore/6.4.0/lib64:/opt/easybuild/software/Core/GCCcore/6.4.0/lib')
  65. == 2018-07-20 10:57:54,163 modules.py:702 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
  66. == 2018-07-20 10:57:54,163 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
  67. == 2018-07-20 10:57:54,164 toolchain.py:525 DEBUG Loading modules for dependencies: []
  68. == 2018-07-20 10:57:54,164 modules.py:648 DEBUG Current MODULEPATH: /opt/easybuild/modules/all/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2:/opt/easybuild/modules/all/Compiler/GCC/6.4.0-2.28:/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all
  69. == 2018-07-20 10:57:54,164 modules.py:655 DEBUG Changing LD_LIBRARY_PATH from '/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib:/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/lib:/opt/easybuild/software/Core/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/opt/easybuild/software/Core/GCCcore/6.4.0/lib64:/opt/easybuild/software/Core/GCCcore/6.4.0/lib' to '' in environment for module command
  70. == 2018-07-20 10:57:54,164 modules.py:655 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
  71. == 2018-07-20 10:57:54,165 modules.py:659 DEBUG Running module command '/opt/easybuild/lmod/lmod/libexec/lmod python --terse list' from /mnt/ramdisk/seqtk/1.3/foss-2018a/seqtk-1.3
  72. == 2018-07-20 10:57:54,248 modules.py:665 DEBUG Output of module command '/opt/easybuild/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2:/opt/easybuild/modules/all/Compiler/GCC/6.4.0-2.28:/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all";
  73. os.environ["_ModuleTable001_"] = "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";
  74. os.environ["_ModuleTable002_"] = "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";
  75. os.environ["_ModuleTable003_"] = "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";
  76. os.environ["_ModuleTable004_"] = "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";
  77. os.environ["_ModuleTable005_"] = "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";
  78. os.environ["_ModuleTable006_"] = "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";
  79. os.environ["_ModuleTable007_"] = "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";
  80. os.environ["_ModuleTable_Sz_"] = "7";
  81. ; stderr: EasyBuild/develop
  82. GCCcore/6.4.0
  83. binutils/2.28
  84. GCC/6.4.0-2.28
  85. numactl/2.0.11
  86. hwloc/1.11.8
  87. OpenMPI/2.1.2
  88. OpenBLAS/0.2.20
  89. FFTW/3.3.7
  90. ScaLAPACK/2.0.2-OpenBLAS-0.2.20
  91. foss/2018a
  92.  
  93. == 2018-07-20 10:57:54,249 modules.py:1137 DEBUG Output found in stdout, seems like '/opt/easybuild/lmod/lmod/libexec/lmod python --terse list' ran fine
  94. == 2018-07-20 10:57:54,250 modules.py:702 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib', '/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib', '/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib', '/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib', '/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/lib', '/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/lib', '/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/lib', '/opt/easybuild/software/Core/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0', '/opt/easybuild/software/Core/GCCcore/6.4.0/lib64', '/opt/easybuild/software/Core/GCCcore/6.4.0/lib'] to ['/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib', '/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib', '/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib', '/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib', '/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/lib', '/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/lib', '/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/lib', '/opt/easybuild/software/Core/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0', '/opt/easybuild/software/Core/GCCcore/6.4.0/lib64', '/opt/easybuild/software/Core/GCCcore/6.4.0/lib']
  95. == 2018-07-20 10:57:54,250 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib:/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/lib:/opt/easybuild/software/Core/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/opt/easybuild/software/Core/GCCcore/6.4.0/lib64:/opt/easybuild/software/Core/GCCcore/6.4.0/lib (previous value: '/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib:/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/lib:/opt/easybuild/software/Core/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/opt/easybuild/software/Core/GCCcore/6.4.0/lib64:/opt/easybuild/software/Core/GCCcore/6.4.0/lib')
  96. == 2018-07-20 10:57:54,250 modules.py:702 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
  97. == 2018-07-20 10:57:54,250 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
  98. == 2018-07-20 10:57:54,252 modules.py:648 DEBUG Current MODULEPATH: /opt/easybuild/modules/all/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2:/opt/easybuild/modules/all/Compiler/GCC/6.4.0-2.28:/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all
  99. == 2018-07-20 10:57:54,252 modules.py:655 DEBUG Changing LD_LIBRARY_PATH from '/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib:/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib:/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/hwloc/1.11.8/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/numactl/2.0.11/lib:/opt/easybuild/software/Compiler/GCCcore/6.4.0/binutils/2.28/lib:/opt/easybuild/software/Core/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/opt/easybuild/software/Core/GCCcore/6.4.0/lib64:/opt/easybuild/software/Core/GCCcore/6.4.0/lib' to '' in environment for module command
  100. == 2018-07-20 10:57:54,252 modules.py:655 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
  101. == 2018-07-20 10:57:54,252 modules.py:659 DEBUG Running module command '/opt/easybuild/lmod/lmod/libexec/lmod python show foss/2018a' from /mnt/ramdisk/seqtk/1.3/foss-2018a/seqtk-1.3
  102. == 2018-07-20 10:57:54,602 modules.py:665 DEBUG Output of module command '/opt/easybuild/lmod/lmod/libexec/lmod python show foss/2018a': stdout: os.environ["MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2:/opt/easybuild/modules/all/Compiler/GCC/6.4.0-2.28:/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all";
  103. os.environ["_ModuleTable001_"] = "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";
  104. os.environ["_ModuleTable002_"] = "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";
  105. os.environ["_ModuleTable003_"] = "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";
  106. os.environ["_ModuleTable004_"] = "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";
  107. os.environ["_ModuleTable005_"] = "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";
  108. os.environ["_ModuleTable006_"] = "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";
  109. os.environ["_ModuleTable007_"] = "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";
  110. os.environ["_ModuleTable_Sz_"] = "7";
  111. ; stderr: -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  112. /opt/easybuild/modules/all/Core/foss/2018a.lua:
  113. -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  114. help([[
  115. Description
  116. ===========
  117. GNU Compiler Collection (GCC) based compiler toolchain, including
  118. OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
  119.  
  120.  
  121. More information
  122. ================
  123. - Homepage: (none)
  124. ]])
  125. whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including
  126. OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.")
  127. whatis("Homepage: (none)")
  128. conflict("foss")
  129. setenv("EBROOTFOSS","/opt/easybuild/software/Core/foss/2018a")
  130. setenv("EBVERSIONFOSS","2018a")
  131. setenv("EBDEVELFOSS","/opt/easybuild/software/Core/foss/2018a/easybuild/Core-foss-2018a-easybuild-devel")
  132.  
  133.  
  134. == 2018-07-20 10:57:54,602 modules.py:561 DEBUG Cached result for 'module show foss/2018a' with key '('MODULEPATH=/opt/easybuild/modules/all/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2:/opt/easybuild/modules/all/Compiler/GCC/6.4.0-2.28:/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all', 'lmod', 'foss/2018a')': os.environ["MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2:/opt/easybuild/modules/all/Compiler/GCC/6.4.0-2.28:/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all";
  135. os.environ["_ModuleTable001_"] = "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";
  136. os.environ["_ModuleTable002_"] = "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";
  137. os.environ["_ModuleTable003_"] = "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";
  138. os.environ["_ModuleTable004_"] = "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";
  139. os.environ["_ModuleTable005_"] = "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";
  140. os.environ["_ModuleTable006_"] = "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";
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  142. os.environ["_ModuleTable_Sz_"] = "7";
  143. -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  144. /opt/easybuild/modules/all/Core/foss/2018a.lua:
  145. -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  146. help([[
  147. Description
  148. ===========
  149. GNU Compiler Collection (GCC) based compiler toolchain, including
  150. OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
  151.  
  152.  
  153. More information
  154. ================
  155. - Homepage: (none)
  156. ]])
  157. whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including
  158. OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.")
  159. whatis("Homepage: (none)")
  160. conflict("foss")
  161. setenv("EBROOTFOSS","/opt/easybuild/software/Core/foss/2018a")
  162. setenv("EBVERSIONFOSS","2018a")
  163. setenv("EBDEVELFOSS","/opt/easybuild/software/Core/foss/2018a/easybuild/Core-foss-2018a-easybuild-devel")
  164.  
  165.  
  166. == 2018-07-20 10:57:54,603 modules.py:557 DEBUG Found cached result for 'module show foss/2018a' with key '('MODULEPATH=/opt/easybuild/modules/all/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2:/opt/easybuild/modules/all/Compiler/GCC/6.4.0-2.28:/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all', 'lmod', 'foss/2018a')': os.environ["MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2:/opt/easybuild/modules/all/Compiler/GCC/6.4.0-2.28:/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all";
  167. os.environ["_ModuleTable001_"] = "X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPTg2NDAwLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXtFYXN5QnVpbGQ9e1siZm4iXT0iL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29yZS9FYXN5QnVpbGQvZGV2ZWxvcC5sdWEiLFsiZnVsbE5hbWUiXT0iRWFzeUJ1aWxkL2RldmVsb3AiLFsibG9hZE9yZGVyIl09MSxwcm9wVD17fSxbInN0YWNrRGVwdGgiXT0wLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJFYXN5QnVpbGQiLH0sRkZUVz17WyJmbiJdPSIvb3B0L2Vhc3lidWlsZC9tb2R1bGVzL2FsbC9NUEkvR0NDLzYuNC4wLTIuMjgvT3Blbk1QSS8yLjEuMi9GRlRXLzMuMy43Lmx1";
  168. os.environ["_ModuleTable002_"] = "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";
  169. os.environ["_ModuleTable003_"] = "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";
  170. os.environ["_ModuleTable004_"] = "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";
  171. os.environ["_ModuleTable005_"] = "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";
  172. os.environ["_ModuleTable006_"] = "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";
  173. os.environ["_ModuleTable007_"] = "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";
  174. os.environ["_ModuleTable_Sz_"] = "7";
  175. -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  176. /opt/easybuild/modules/all/Core/foss/2018a.lua:
  177. -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  178. help([[
  179. Description
  180. ===========
  181. GNU Compiler Collection (GCC) based compiler toolchain, including
  182. OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
  183.  
  184.  
  185. More information
  186. ================
  187. - Homepage: (none)
  188. ]])
  189. whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including
  190. OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.")
  191. whatis("Homepage: (none)")
  192. conflict("foss")
  193. setenv("EBROOTFOSS","/opt/easybuild/software/Core/foss/2018a")
  194. setenv("EBVERSIONFOSS","2018a")
  195. setenv("EBDEVELFOSS","/opt/easybuild/software/Core/foss/2018a/easybuild/Core-foss-2018a-easybuild-devel")
  196.  
  197.  
  198. == 2018-07-20 10:57:54,604 toolchain.py:600 DEBUG List of toolchain dependencies from toolchain module: ['GCC/6.4.0-2.28', 'OpenMPI/2.1.2', 'OpenBLAS/0.2.20', 'FFTW/3.3.7', 'ScaLAPACK/2.0.2-OpenBLAS-0.2.20']
  199. == 2018-07-20 10:57:54,605 toolchain.py:418 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '2018a', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'foss', 'full_mod_name': 'Core/foss/2018a', 'hidden': False, 'parsed': True, 'short_mod_name': 'foss/2018a'}: {'LAPACK': ['OpenBLAS'], 'SCALAPACK': ['ScaLAPACK'], 'BLAS': ['OpenBLAS'], 'FFT': ['FFTW'], 'BLACS': ['BLACS'], 'MPI': ['OpenMPI'], 'COMPILER': ['GCC']}
  200. == 2018-07-20 10:57:54,606 toolchain.py:289 DEBUG get_software_version software version 2.0.2 for ScaLAPACK was found in environment
  201. == 2018-07-20 10:57:54,606 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
  202. == 2018-07-20 10:57:54,607 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
  203. == 2018-07-20 10:57:54,607 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
  204. == 2018-07-20 10:57:54,607 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
  205. == 2018-07-20 10:57:54,607 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.2.20' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
  206. == 2018-07-20 10:57:54,607 toolchain.py:610 DEBUG Removing BLACS from list of optional toolchain elements.
  207. == 2018-07-20 10:57:54,608 toolchain.py:613 DEBUG List of toolchain elements from toolchain definition: set(['GCC', 'FFTW', 'OpenMPI', 'ScaLAPACK', 'OpenBLAS'])
  208. == 2018-07-20 10:57:54,608 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: True
  209. == 2018-07-20 10:57:54,608 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False
  210. == 2018-07-20 10:57:54,609 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False
  211. == 2018-07-20 10:57:54,609 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False
  212. == 2018-07-20 10:57:54,609 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.2.20' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False
  213. == 2018-07-20 10:57:54,609 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False
  214. == 2018-07-20 10:57:54,610 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False
  215. == 2018-07-20 10:57:54,610 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False
  216. == 2018-07-20 10:57:54,610 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: True
  217. == 2018-07-20 10:57:54,610 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.2.20' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False
  218. == 2018-07-20 10:57:54,611 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False
  219. == 2018-07-20 10:57:54,611 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: True
  220. == 2018-07-20 10:57:54,611 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False
  221. == 2018-07-20 10:57:54,611 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False
  222. == 2018-07-20 10:57:54,611 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.2.20' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False
  223. == 2018-07-20 10:57:54,612 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False
  224. == 2018-07-20 10:57:54,612 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False
  225. == 2018-07-20 10:57:54,612 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False
  226. == 2018-07-20 10:57:54,612 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False
  227. == 2018-07-20 10:57:54,613 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.2.20' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: True
  228. == 2018-07-20 10:57:54,613 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False
  229. == 2018-07-20 10:57:54,613 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False
  230. == 2018-07-20 10:57:54,613 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: True
  231. == 2018-07-20 10:57:54,614 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False
  232. == 2018-07-20 10:57:54,614 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.2.20' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False
  233. == 2018-07-20 10:57:54,614 toolchain.py:616 INFO List of toolchain dependency modules and toolchain definition match!
  234. == 2018-07-20 10:57:54,616 options.py:90 WARNING option: option with name _opt_CC returns None
  235. == 2018-07-20 10:57:54,616 options.py:90 WARNING option: option with name _opt_CXX returns None
  236. == 2018-07-20 10:57:54,617 options.py:90 WARNING option: option with name _opt_F77 returns None
  237. == 2018-07-20 10:57:54,617 options.py:90 WARNING option: option with name _opt_F90 returns None
  238. == 2018-07-20 10:57:54,617 options.py:90 WARNING option: option with name _opt_FC returns None
  239. == 2018-07-20 10:57:54,618 compiler.py:334 INFO _set_optimal_architecture: using march=native as optarch for x86_64.
  240. == 2018-07-20 10:57:54,621 toolchain.py:289 DEBUG get_software_version software version 2.1.2 for OpenMPI was found in environment
  241. == 2018-07-20 10:57:54,624 toolchain.py:280 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2 for OpenMPI was found in environment
  242. == 2018-07-20 10:57:54,626 toolchain.py:280 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20 for OpenBLAS was found in environment
  243. == 2018-07-20 10:57:54,627 toolchain.py:280 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20 for OpenBLAS was found in environment
  244. == 2018-07-20 10:57:54,627 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib64 was not found
  245. == 2018-07-20 10:57:54,632 toolchain.py:280 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20 for OpenBLAS was found in environment
  246. == 2018-07-20 10:57:54,633 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib64 was not found
  247. == 2018-07-20 10:57:54,633 toolchain.py:289 DEBUG get_software_version software version 2.0.2 for ScaLAPACK was found in environment
  248. == 2018-07-20 10:57:54,637 toolchain.py:280 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20 for ScaLAPACK was found in environment
  249. == 2018-07-20 10:57:54,638 toolchain.py:280 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20 for ScaLAPACK was found in environment
  250. == 2018-07-20 10:57:54,638 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib64 was not found
  251. == 2018-07-20 10:57:54,638 toolchain.py:289 DEBUG get_software_version software version 3.3.7 for FFTW was found in environment
  252. == 2018-07-20 10:57:54,640 toolchain.py:280 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7 for FFTW was found in environment
  253. == 2018-07-20 10:57:54,640 toolchain.py:280 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7 for FFTW was found in environment
  254. == 2018-07-20 10:57:54,641 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib64 was not found
  255. == 2018-07-20 10:57:54,642 toolchain.py:692 DEBUG prepare: set additional variables onlymod=False
  256. == 2018-07-20 10:57:54,646 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_INC_DIR to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include
  257. == 2018-07-20 10:57:54,646 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include (previously undefined)
  258. == 2018-07-20 10:57:54,647 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include (previously undefined)
  259. == 2018-07-20 10:57:54,647 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_INC_DIR to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include
  260. == 2018-07-20 10:57:54,647 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include (previously undefined)
  261. == 2018-07-20 10:57:54,647 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include (previously undefined)
  262. == 2018-07-20 10:57:54,647 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_LIB_DIR to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib
  263. == 2018-07-20 10:57:54,647 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib (previously undefined)
  264. == 2018-07-20 10:57:54,648 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib (previously undefined)
  265. == 2018-07-20 10:57:54,648 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a
  266. == 2018-07-20 10:57:54,648 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  267. == 2018-07-20 10:57:54,648 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  268. == 2018-07-20 10:57:54,648 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a
  269. == 2018-07-20 10:57:54,648 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  270. == 2018-07-20 10:57:54,648 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  271. == 2018-07-20 10:57:54,649 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LIB_DIR to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib
  272. == 2018-07-20 10:57:54,649 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib (previously undefined)
  273. == 2018-07-20 10:57:54,649 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib (previously undefined)
  274. == 2018-07-20 10:57:54,649 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_MT_STATIC_LIBS to libopenblas.a,libgfortran.a
  275. == 2018-07-20 10:57:54,649 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  276. == 2018-07-20 10:57:54,649 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  277. == 2018-07-20 10:57:54,650 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_STATIC_LIBS to libopenblas.a,libgfortran.a
  278. == 2018-07-20 10:57:54,650 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  279. == 2018-07-20 10:57:54,650 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  280. == 2018-07-20 10:57:54,650 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CC to gcc
  281. == 2018-07-20 10:57:54,650 environment.py:97 INFO Environment variable CC set to gcc (previously undefined)
  282. == 2018-07-20 10:57:54,650 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined)
  283. == 2018-07-20 10:57:54,651 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno
  284. == 2018-07-20 10:57:54,651 environment.py:97 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  285. == 2018-07-20 10:57:54,651 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  286. == 2018-07-20 10:57:54,651 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CPPFLAGS to -I/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include -I/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include -I/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include
  287. == 2018-07-20 10:57:54,651 environment.py:97 INFO Environment variable CPPFLAGS set to -I/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include -I/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include -I/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include (previously undefined)
  288. == 2018-07-20 10:57:54,651 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include -I/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include -I/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include (previously undefined)
  289. == 2018-07-20 10:57:54,652 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CXX to g++
  290. == 2018-07-20 10:57:54,652 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined)
  291. == 2018-07-20 10:57:54,652 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined)
  292. == 2018-07-20 10:57:54,652 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CXXFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno
  293. == 2018-07-20 10:57:54,652 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  294. == 2018-07-20 10:57:54,652 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  295. == 2018-07-20 10:57:54,653 toolchain.py:901 DEBUG _setenv_variables: setting environment variable F77 to gfortran
  296. == 2018-07-20 10:57:54,653 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined)
  297. == 2018-07-20 10:57:54,653 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined)
  298. == 2018-07-20 10:57:54,653 toolchain.py:901 DEBUG _setenv_variables: setting environment variable F90 to gfortran
  299. == 2018-07-20 10:57:54,653 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined)
  300. == 2018-07-20 10:57:54,653 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined)
  301. == 2018-07-20 10:57:54,654 toolchain.py:901 DEBUG _setenv_variables: setting environment variable F90FLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno
  302. == 2018-07-20 10:57:54,654 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  303. == 2018-07-20 10:57:54,654 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  304. == 2018-07-20 10:57:54,654 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FC to gfortran
  305. == 2018-07-20 10:57:54,654 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined)
  306. == 2018-07-20 10:57:54,654 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined)
  307. == 2018-07-20 10:57:54,655 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FCFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno
  308. == 2018-07-20 10:57:54,655 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  309. == 2018-07-20 10:57:54,655 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  310. == 2018-07-20 10:57:54,655 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno
  311. == 2018-07-20 10:57:54,655 environment.py:97 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  312. == 2018-07-20 10:57:54,655 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  313. == 2018-07-20 10:57:54,656 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFTW_INC_DIR to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include
  314. == 2018-07-20 10:57:54,656 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include (previously undefined)
  315. == 2018-07-20 10:57:54,656 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include (previously undefined)
  316. == 2018-07-20 10:57:54,656 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFTW_LIB_DIR to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib
  317. == 2018-07-20 10:57:54,656 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib (previously undefined)
  318. == 2018-07-20 10:57:54,656 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib (previously undefined)
  319. == 2018-07-20 10:57:54,657 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS to libfftw3.a
  320. == 2018-07-20 10:57:54,657 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined)
  321. == 2018-07-20 10:57:54,657 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined)
  322. == 2018-07-20 10:57:54,657 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS_MT to -fftw3 -pthread
  323. == 2018-07-20 10:57:54,657 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
  324. == 2018-07-20 10:57:54,657 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
  325. == 2018-07-20 10:57:54,658 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_INC_DIR to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include
  326. == 2018-07-20 10:57:54,658 environment.py:97 INFO Environment variable FFT_INC_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include (previously undefined)
  327. == 2018-07-20 10:57:54,658 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include (previously undefined)
  328. == 2018-07-20 10:57:54,658 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_LIB_DIR to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib
  329. == 2018-07-20 10:57:54,658 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib (previously undefined)
  330. == 2018-07-20 10:57:54,658 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib (previously undefined)
  331. == 2018-07-20 10:57:54,659 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS to libfftw3.a
  332. == 2018-07-20 10:57:54,659 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined)
  333. == 2018-07-20 10:57:54,659 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined)
  334. == 2018-07-20 10:57:54,659 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS_MT to libfftw3.a,libpthread.a
  335. == 2018-07-20 10:57:54,659 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
  336. == 2018-07-20 10:57:54,659 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
  337. == 2018-07-20 10:57:54,660 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FLIBS to -lgfortran
  338. == 2018-07-20 10:57:54,660 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined)
  339. == 2018-07-20 10:57:54,660 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined)
  340. == 2018-07-20 10:57:54,660 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_INC_DIR to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include
  341. == 2018-07-20 10:57:54,660 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include (previously undefined)
  342. == 2018-07-20 10:57:54,660 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include (previously undefined)
  343. == 2018-07-20 10:57:54,661 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_LIB_DIR to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib
  344. == 2018-07-20 10:57:54,661 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib (previously undefined)
  345. == 2018-07-20 10:57:54,661 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib (previously undefined)
  346. == 2018-07-20 10:57:54,661 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a
  347. == 2018-07-20 10:57:54,661 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  348. == 2018-07-20 10:57:54,661 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  349. == 2018-07-20 10:57:54,662 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a
  350. == 2018-07-20 10:57:54,662 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  351. == 2018-07-20 10:57:54,662 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  352. == 2018-07-20 10:57:54,662 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/opt/easybuild/software/Core/GCCcore/6.4.0/lib64 -L/opt/easybuild/software/Core/GCCcore/6.4.0/lib -L/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib -L/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib -L/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib
  353. == 2018-07-20 10:57:54,662 environment.py:97 INFO Environment variable LDFLAGS set to -L/opt/easybuild/software/Core/GCCcore/6.4.0/lib64 -L/opt/easybuild/software/Core/GCCcore/6.4.0/lib -L/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib -L/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib -L/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib (previously undefined)
  354. == 2018-07-20 10:57:54,662 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/opt/easybuild/software/Core/GCCcore/6.4.0/lib64 -L/opt/easybuild/software/Core/GCCcore/6.4.0/lib -L/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib -L/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib -L/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib (previously undefined)
  355. == 2018-07-20 10:57:54,663 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBBLAS to -lopenblas -lgfortran
  356. == 2018-07-20 10:57:54,663 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previously undefined)
  357. == 2018-07-20 10:57:54,663 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined)
  358. == 2018-07-20 10:57:54,663 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBBLAS_MT to -lopenblas -lgfortran
  359. == 2018-07-20 10:57:54,663 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
  360. == 2018-07-20 10:57:54,663 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
  361. == 2018-07-20 10:57:54,664 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBFFT to -lfftw3
  362. == 2018-07-20 10:57:54,664 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined)
  363. == 2018-07-20 10:57:54,664 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined)
  364. == 2018-07-20 10:57:54,664 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBFFT_MT to -lfftw3 -lpthread
  365. == 2018-07-20 10:57:54,664 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
  366. == 2018-07-20 10:57:54,664 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
  367. == 2018-07-20 10:57:54,665 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK to -lopenblas -lgfortran
  368. == 2018-07-20 10:57:54,665 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previously undefined)
  369. == 2018-07-20 10:57:54,665 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined)
  370. == 2018-07-20 10:57:54,665 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT to -lopenblas -lgfortran
  371. == 2018-07-20 10:57:54,665 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
  372. == 2018-07-20 10:57:54,665 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
  373. == 2018-07-20 10:57:54,666 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -lopenblas -lgfortran
  374. == 2018-07-20 10:57:54,666 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
  375. == 2018-07-20 10:57:54,666 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
  376. == 2018-07-20 10:57:54,666 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK_ONLY to -lopenblas -lgfortran
  377. == 2018-07-20 10:57:54,666 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
  378. == 2018-07-20 10:57:54,666 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
  379. == 2018-07-20 10:57:54,667 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBS to -lm -lpthread
  380. == 2018-07-20 10:57:54,667 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined)
  381. == 2018-07-20 10:57:54,667 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined)
  382. == 2018-07-20 10:57:54,667 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK to -lscalapack -lopenblas -lgfortran
  383. == 2018-07-20 10:57:54,667 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
  384. == 2018-07-20 10:57:54,667 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
  385. == 2018-07-20 10:57:54,668 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT to -lscalapack -lopenblas -lpthread -lgfortran
  386. == 2018-07-20 10:57:54,668 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
  387. == 2018-07-20 10:57:54,668 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
  388. == 2018-07-20 10:57:54,668 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -lscalapack -lgfortran
  389. == 2018-07-20 10:57:54,668 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
  390. == 2018-07-20 10:57:54,668 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
  391. == 2018-07-20 10:57:54,669 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -lscalapack -lgfortran
  392. == 2018-07-20 10:57:54,669 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
  393. == 2018-07-20 10:57:54,669 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
  394. == 2018-07-20 10:57:54,669 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPICC to mpicc
  395. == 2018-07-20 10:57:54,669 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined)
  396. == 2018-07-20 10:57:54,669 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined)
  397. == 2018-07-20 10:57:54,670 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPICXX to mpicxx
  398. == 2018-07-20 10:57:54,670 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined)
  399. == 2018-07-20 10:57:54,670 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined)
  400. == 2018-07-20 10:57:54,670 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPIF77 to mpifort
  401. == 2018-07-20 10:57:54,670 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined)
  402. == 2018-07-20 10:57:54,670 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined)
  403. == 2018-07-20 10:57:54,670 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPIF90 to mpifort
  404. == 2018-07-20 10:57:54,671 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined)
  405. == 2018-07-20 10:57:54,671 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined)
  406. == 2018-07-20 10:57:54,671 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPIFC to mpifort
  407. == 2018-07-20 10:57:54,671 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined)
  408. == 2018-07-20 10:57:54,671 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined)
  409. == 2018-07-20 10:57:54,671 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_INC_DIR to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/include
  410. == 2018-07-20 10:57:54,672 environment.py:97 INFO Environment variable MPI_INC_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/include (previously undefined)
  411. == 2018-07-20 10:57:54,672 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/include (previously undefined)
  412. == 2018-07-20 10:57:54,672 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_LIB_DIR to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib
  413. == 2018-07-20 10:57:54,672 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib (previously undefined)
  414. == 2018-07-20 10:57:54,672 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib (previously undefined)
  415. == 2018-07-20 10:57:54,672 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_LIB_SHARED to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib/libmpi.so
  416. == 2018-07-20 10:57:54,673 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib/libmpi.so (previously undefined)
  417. == 2018-07-20 10:57:54,673 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib/libmpi.so (previously undefined)
  418. == 2018-07-20 10:57:54,673 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_LIB_STATIC to
  419. == 2018-07-20 10:57:54,673 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previously undefined)
  420. == 2018-07-20 10:57:54,673 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined)
  421. == 2018-07-20 10:57:54,673 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_CC to gcc
  422. == 2018-07-20 10:57:54,674 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previously undefined)
  423. == 2018-07-20 10:57:54,674 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined)
  424. == 2018-07-20 10:57:54,674 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_CXX to g++
  425. == 2018-07-20 10:57:54,674 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previously undefined)
  426. == 2018-07-20 10:57:54,674 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined)
  427. == 2018-07-20 10:57:54,674 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_F77 to gfortran
  428. == 2018-07-20 10:57:54,675 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previously undefined)
  429. == 2018-07-20 10:57:54,675 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined)
  430. == 2018-07-20 10:57:54,675 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_F90 to gfortran
  431. == 2018-07-20 10:57:54,675 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previously undefined)
  432. == 2018-07-20 10:57:54,675 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined)
  433. == 2018-07-20 10:57:54,675 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_FC to gfortran
  434. == 2018-07-20 10:57:54,676 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previously undefined)
  435. == 2018-07-20 10:57:54,676 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined)
  436. == 2018-07-20 10:57:54,676 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -ftree-vectorize -march=native
  437. == 2018-07-20 10:57:54,676 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined)
  438. == 2018-07-20 10:57:54,676 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined)
  439. == 2018-07-20 10:57:54,676 toolchain.py:901 DEBUG _setenv_variables: setting environment variable PRECFLAGS to -fno-math-errno
  440. == 2018-07-20 10:57:54,677 environment.py:97 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined)
  441. == 2018-07-20 10:57:54,677 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined)
  442. == 2018-07-20 10:57:54,677 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_INC_DIR to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include
  443. == 2018-07-20 10:57:54,677 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include (previously undefined)
  444. == 2018-07-20 10:57:54,677 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include (previously undefined)
  445. == 2018-07-20 10:57:54,678 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib
  446. == 2018-07-20 10:57:54,678 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib (previously undefined)
  447. == 2018-07-20 10:57:54,678 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib (previously undefined)
  448. == 2018-07-20 10:57:54,678 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a
  449. == 2018-07-20 10:57:54,678 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
  450. == 2018-07-20 10:57:54,678 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
  451. == 2018-07-20 10:57:54,679 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a
  452. == 2018-07-20 10:57:54,679 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
  453. == 2018-07-20 10:57:54,679 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
  454. == 2018-07-20 10:57:54,679 toolchain.py:289 DEBUG get_software_version software version 2.1.2 for OpenMPI was found in environment
  455. == 2018-07-20 10:57:54,679 easyblock.py:1442 INFO Using /mnt/ramdisk/seqtk/1.3/foss-2018a/seqtk-1.3/ as start dir
  456. == 2018-07-20 10:57:54,680 easyblock.py:1445 DEBUG Changed to real build directory /mnt/ramdisk/seqtk/1.3/foss-2018a/seqtk-1.3/ (start_dir)
  457. == 2018-07-20 10:57:54,680 easyblock.py:2503 INFO Skipping configure step (skip: None, skipsteps: ['configure'])
  458. == 2018-07-20 10:57:54,680 build_log.py:233 INFO configuring [skipped]
  459. == 2018-07-20 10:57:54,680 easyblock.py:2520 DEBUG Not skipping build step (skippable: True, skip: None, skipsteps: ['configure'], module_only: False, force: True
  460. == 2018-07-20 10:57:54,680 build_log.py:233 INFO building...
  461. == 2018-07-20 10:57:54,681 easyblock.py:2528 INFO Starting build step
  462. == 2018-07-20 10:57:54,681 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f89b11bd450>
  463. == 2018-07-20 10:57:54,681 templates.py:178 DEBUG version found in easyconfig is 1.3
  464. == 2018-07-20 10:57:54,681 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s
  465. == 2018-07-20 10:57:54,681 templates.py:222 DEBUG name: github_account, config: None
  466. == 2018-07-20 10:57:54,681 templates.py:222 DEBUG name: name, config: seqtk
  467. == 2018-07-20 10:57:54,682 templates.py:222 DEBUG name: version, config: 1.3
  468. == 2018-07-20 10:57:54,682 templates.py:222 DEBUG name: versionsuffix, config:
  469. == 2018-07-20 10:57:54,682 templates.py:222 DEBUG name: versionprefix, config:
  470. == 2018-07-20 10:57:54,682 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f89b11bd450>
  471. == 2018-07-20 10:57:54,682 templates.py:178 DEBUG version found in easyconfig is 1.3
  472. == 2018-07-20 10:57:54,682 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s
  473. == 2018-07-20 10:57:54,683 templates.py:222 DEBUG name: github_account, config: None
  474. == 2018-07-20 10:57:54,683 templates.py:222 DEBUG name: name, config: seqtk
  475. == 2018-07-20 10:57:54,683 templates.py:222 DEBUG name: version, config: 1.3
  476. == 2018-07-20 10:57:54,683 templates.py:222 DEBUG name: versionsuffix, config:
  477. == 2018-07-20 10:57:54,683 templates.py:222 DEBUG name: versionprefix, config:
  478. == 2018-07-20 10:57:54,683 easyblock.py:2534 INFO Running method build_step part of step build
  479. == 2018-07-20 10:57:54,684 run.py:135 DEBUG run_cmd: Output of " make -j 8 CC="$CC" CFLAGS="$CLFAGS"" will be logged to /tmp/eb-rcJWXB/easybuild-run_cmd-0AJGuy.log
  480. == 2018-07-20 10:57:54,684 run.py:173 DEBUG run_cmd: running cmd make -j 8 CC="$CC" CFLAGS="$CLFAGS" (in /mnt/ramdisk/seqtk/1.3/foss-2018a/seqtk-1.3)
  481. == 2018-07-20 10:57:54,684 run.py:192 INFO running cmd: make -j 8 CC="$CC" CFLAGS="$CLFAGS"
  482. == 2018-07-20 10:57:54,777 build_log.py:158 ERROR EasyBuild crashed with an error (at easybuild/EB-develop/vsc-base/lib/vsc/utils/exceptions.py:124 in __init__): cmd " make -j 8 CC="$CC" CFLAGS="$CLFAGS"" exited with exit code 2 and output:
  483. gcc seqtk.c -o seqtk -lz -lm
  484. seqtk.c:31:18: fatal error: zlib.h: No such file or directory
  485. #include <zlib.h>
  486. ^
  487. compilation terminated.
  488. Makefile:8: recipe for target 'seqtk' failed
  489. make: *** [seqtk] Error 1
  490. (at easybuild/EB-develop/easybuild-framework/easybuild/tools/run.py:501 in parse_cmd_output)
  491. == 2018-07-20 10:57:54,777 easyblock.py:2776 WARNING build failed (first 300 chars): cmd " make -j 8 CC="$CC" CFLAGS="$CLFAGS"" exited with exit code 2 and output:
  492. gcc seqtk.c -o seqtk -lz -lm
  493. seqtk.c:31:18: fatal error: zlib.h: No such file or directory
  494. #include <zlib.h>
  495. ^
  496. compilation terminated.
  497. Makefile:8: recipe for target 'seqtk' failed
  498. make: *** [seqtk] Err
  499. == 2018-07-20 10:57:54,778 easyblock.py:281 INFO Closing log for application name seqtk version 1.3
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