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misnomer001

SPGT swat - armmba sintashta fail

misnomer001
Jan 9th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 1916031533
  4.  
  5. left pops:
  6. SPGT
  7. InPe
  8. Armenia_MBA.SG
  9. Sintashta_MLBA
  10.  
  11. right pops:
  12. Kazakhstan_Botai.SG
  13. Ganj_Dareh_N
  14. PPN
  15. Anatolia_N
  16. Iberia_MN
  17. Russia_MA1.SG
  18. Georgia_Satsurblia.SG
  19. Kostenki14.SG
  20. Russia_Karelia_HG
  21. Serbia_Iron_Gates_HG
  22. Tyumen_HG
  23. Onge.DG
  24. Russia_Shamanka_EN.SG
  25.  
  26. 0 SPGT 85
  27. 1 InPe 10
  28. 2 Armenia_MBA.SG 4
  29. 3 Sintashta_MLBA 37
  30. 4 Kazakhstan_Botai.SG 3
  31. 5 Ganj_Dareh_N 7
  32. 6 PPN 8
  33. 7 Anatolia_N 22
  34. 8 Iberia_MN 4
  35. 9 Russia_MA1.SG 1
  36. 10 Georgia_Satsurblia.SG 1
  37. 11 Kostenki14.SG 1
  38. 12 Russia_Karelia_HG 2
  39. 13 Serbia_Iron_Gates_HG 32
  40. 14 Tyumen_HG 2
  41. 15 Onge.DG 2
  42. 16 Russia_Shamanka_EN.SG 10
  43. jackknife block size: 0.050
  44. snps: 1150477 indivs: 231
  45. number of blocks for block jackknife: 552
  46. ## ncols: 1150477
  47. coverage: SPGT 1134632
  48. coverage: InPe 878190
  49. coverage: Armenia_MBA.SG 919421
  50. coverage: Sintashta_MLBA 1128781
  51. coverage: Kazakhstan_Botai.SG 1149870
  52. coverage: Ganj_Dareh_N 1029695
  53. coverage: PPN 835499
  54. coverage: Anatolia_N 1134099
  55. coverage: Iberia_MN 967760
  56. coverage: Russia_MA1.SG 805960
  57. coverage: Georgia_Satsurblia.SG 801311
  58. coverage: Kostenki14.SG 1048972
  59. coverage: Russia_Karelia_HG 1010733
  60. coverage: Serbia_Iron_Gates_HG 1139259
  61. coverage: Tyumen_HG 807474
  62. coverage: Onge.DG 1120748
  63. coverage: Russia_Shamanka_EN.SG 1149998
  64. dof (jackknife): 468.873
  65. numsnps used: 1150477
  66. codimension 1
  67. f4info:
  68. f4rank: 2 dof: 10 chisq: 40.170 tail: 1.58142725e-05 dofdiff: 12 chisqdiff: -40.170 taildiff: 1
  69. B:
  70. scale 1.000 1.000
  71. Ganj_Dareh_N -1.220 1.750
  72. PPN 0.610 1.572
  73. Anatolia_N 0.975 1.148
  74. Iberia_MN 1.081 0.793
  75. Russia_MA1.SG -0.112 0.106
  76. Georgia_Satsurblia.SG -0.128 1.403
  77. Kostenki14.SG -0.080 0.449
  78. Russia_Karelia_HG 0.949 -0.379
  79. Serbia_Iron_Gates_HG 1.692 -0.694
  80. Tyumen_HG 0.009 -0.238
  81. Onge.DG -1.575 1.044
  82. Russia_Shamanka_EN.SG -1.319 0.753
  83. A:
  84. scale 539.810 1087.620
  85. InPe -0.272 0.136
  86. Armenia_MBA.SG 1.130 1.595
  87. Sintashta_MLBA 1.284 -0.660
  88.  
  89.  
  90. full rank
  91. f4info:
  92. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 40.170 taildiff: 1.58142725e-05
  93. B:
  94. scale 1.000 1.000 1.000
  95. Ganj_Dareh_N -1.222 1.781 -0.177
  96. PPN 0.610 1.507 -1.134
  97. Anatolia_N 0.991 1.082 -0.871
  98. Iberia_MN 1.087 0.719 -0.185
  99. Russia_MA1.SG -0.105 0.134 1.111
  100. Georgia_Satsurblia.SG -0.126 1.412 -0.909
  101. Kostenki14.SG -0.045 0.489 0.658
  102. Russia_Karelia_HG 0.986 -0.384 1.307
  103. Serbia_Iron_Gates_HG 1.713 -0.755 2.057
  104. Tyumen_HG 0.002 -0.211 0.925
  105. Onge.DG -1.540 1.108 0.708
  106. Russia_Shamanka_EN.SG -1.290 0.792 -0.310
  107. A:
  108. scale 536.326 976.526 4429.342
  109. InPe -0.205 0.656 1.717
  110. Armenia_MBA.SG 1.171 1.510 0.017
  111. Sintashta_MLBA 1.260 -0.539 0.229
  112.  
  113.  
  114. best coefficients: 0.825 0.001 0.173
  115. Jackknife mean: 0.825049158 0.000891715 0.174059127
  116. std. errors: 0.018 0.034 0.022
  117.  
  118. error covariance (* 1000000)
  119. 311 -491 180
  120. -491 1159 -668
  121. 180 -668 487
  122.  
  123.  
  124. summ: SPGT 3 0.000016 0.825 0.001 0.174 311 -491 180 1159 -668 487
  125.  
  126. fixed pat wt dof chisq tail prob
  127. 000 0 10 40.170 1.58143e-05 0.825 0.001 0.173
  128. 001 1 11 106.397 9.58071e-18 0.767 0.233 -0.000
  129. 010 1 11 39.675 4.06473e-05 0.826 0.000 0.174
  130. 100 1 11 314.224 0 0.000 2.081 -1.081 infeasible
  131. 011 2 12 239.416 0 1.000 0.000 -0.000
  132. 101 2 12 690.683 0 0.000 1.000 -0.000
  133. 110 2 12 4164.775 0 0.000 0.000 1.000
  134. best pat: 000 1.58143e-05 - -
  135. best pat: 010 4.06473e-05 chi(nested): -0.494 p-value for nested model: -nan
  136. best pat: 011 2.19402e-44 chi(nested): 199.741 p-value for nested model: 2.37908e-45
  137.  
  138. coeffs: 0.825 0.001 0.173
  139.  
  140. ## dscore:: f_4(Base, Fit, Rbase, right2)
  141. ## genstat:: f_4(Base, Fit, right1, right2)
  142.  
  143. details: InPe Ganj_Dareh_N 0.001603 8.955394
  144. details: Armenia_MBA.SG Ganj_Dareh_N 0.000127 0.457206
  145. details: Sintashta_MLBA Ganj_Dareh_N -0.003856 -26.391796
  146. dscore: Ganj_Dareh_N f4: 0.000654 Z: 4.361610
  147.  
  148. details: InPe PPN 0.000330 1.678695
  149. details: Armenia_MBA.SG PPN 0.003751 12.184477
  150. details: Sintashta_MLBA PPN 0.000556 3.483893
  151. dscore: PPN f4: 0.000374 Z: 2.291712
  152.  
  153. details: InPe Anatolia_N 0.000043 0.284721
  154. details: Armenia_MBA.SG Anatolia_N 0.003907 15.187274
  155. details: Sintashta_MLBA Anatolia_N 0.001700 11.359199
  156. dscore: Anatolia_N f4: 0.000336 Z: 2.642635
  157.  
  158. details: InPe Iberia_MN 0.000013 0.081390
  159. details: Armenia_MBA.SG Iberia_MN 0.003576 12.644155
  160. details: Sintashta_MLBA Iberia_MN 0.002162 13.263919
  161. dscore: Iberia_MN f4: 0.000391 Z: 2.857501
  162.  
  163. details: InPe Russia_MA1.SG 0.000629 3.200911
  164. details: Armenia_MBA.SG Russia_MA1.SG -0.000030 -0.105346
  165. details: Sintashta_MLBA Russia_MA1.SG -0.000251 -1.459941
  166. dscore: Russia_MA1.SG f4: 0.000476 Z: 2.885342
  167.  
  168. details: InPe Georgia_Satsurblia.SG 0.000622 2.812567
  169. details: Armenia_MBA.SG Georgia_Satsurblia.SG 0.001997 6.143077
  170. details: Sintashta_MLBA Georgia_Satsurblia.SG -0.001143 -6.408962
  171. dscore: Georgia_Satsurblia.SG f4: 0.000318 Z: 1.711501
  172.  
  173. details: InPe Kostenki14.SG 0.000649 3.109546
  174. details: Armenia_MBA.SG Kostenki14.SG 0.000702 2.293014
  175. details: Sintashta_MLBA Kostenki14.SG -0.000320 -1.664214
  176. dscore: Kostenki14.SG f4: 0.000481 Z: 2.727756
  177.  
  178. details: InPe Russia_Karelia_HG -0.000076 -0.424825
  179. details: Armenia_MBA.SG Russia_Karelia_HG 0.001590 5.903478
  180. details: Sintashta_MLBA Russia_Karelia_HG 0.002622 15.890120
  181. dscore: Russia_Karelia_HG f4: 0.000394 Z: 2.611062
  182.  
  183. details: InPe Serbia_Iron_Gates_HG -0.000351 -2.446772
  184. details: Armenia_MBA.SG Serbia_Iron_Gates_HG 0.002657 11.444001
  185. details: Sintashta_MLBA Serbia_Iron_Gates_HG 0.004556 30.639915
  186. dscore: Serbia_Iron_Gates_HG f4: 0.000505 Z: 4.218310
  187.  
  188. details: InPe Tyumen_HG 0.000271 1.468530
  189. details: Armenia_MBA.SG Tyumen_HG -0.000309 -1.201351
  190. details: Sintashta_MLBA Tyumen_HG 0.000169 1.171822
  191. dscore: Tyumen_HG f4: 0.000253 Z: 1.653554
  192.  
  193. details: InPe Onge.DG 0.001632 9.102110
  194. details: Armenia_MBA.SG Onge.DG -0.001606 -5.696648
  195. details: Sintashta_MLBA Onge.DG -0.004189 -24.175759
  196. dscore: Onge.DG f4: 0.000618 Z: 4.077261
  197.  
  198. details: InPe Russia_Shamanka_EN.SG 0.000932 6.175159
  199. details: Armenia_MBA.SG Russia_Shamanka_EN.SG -0.001541 -6.753286
  200. details: Sintashta_MLBA Russia_Shamanka_EN.SG -0.003480 -25.995679
  201. dscore: Russia_Shamanka_EN.SG f4: 0.000163 Z: 1.289170
  202.  
  203. gendstat: Kazakhstan_Botai.SG Ganj_Dareh_N 4.362
  204. gendstat: Kazakhstan_Botai.SG PPN 2.292
  205. gendstat: Kazakhstan_Botai.SG Anatolia_N 2.643
  206. gendstat: Kazakhstan_Botai.SG Iberia_MN 2.858
  207. gendstat: Kazakhstan_Botai.SG Russia_MA1.SG 2.885
  208. gendstat: Kazakhstan_Botai.SG Georgia_Satsurblia.SG 1.712
  209. gendstat: Kazakhstan_Botai.SG Kostenki14.SG 2.728
  210. gendstat: Kazakhstan_Botai.SG Russia_Karelia_HG 2.611
  211. gendstat: Kazakhstan_Botai.SG Serbia_Iron_Gates_HG 4.218
  212. gendstat: Kazakhstan_Botai.SG Tyumen_HG 1.654
  213. gendstat: Kazakhstan_Botai.SG Onge.DG 4.077
  214. gendstat: Kazakhstan_Botai.SG Russia_Shamanka_EN.SG 1.289
  215. gendstat: Ganj_Dareh_N PPN -1.722
  216. gendstat: Ganj_Dareh_N Anatolia_N -2.513
  217. gendstat: Ganj_Dareh_N Iberia_MN -1.861
  218. gendstat: Ganj_Dareh_N Russia_MA1.SG -0.938
  219. gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG -1.860
  220. gendstat: Ganj_Dareh_N Kostenki14.SG -0.926
  221. gendstat: Ganj_Dareh_N Russia_Karelia_HG -1.490
  222. gendstat: Ganj_Dareh_N Serbia_Iron_Gates_HG -1.066
  223. gendstat: Ganj_Dareh_N Tyumen_HG -2.085
  224. gendstat: Ganj_Dareh_N Onge.DG -0.222
  225. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG -3.199
  226. gendstat: PPN Anatolia_N -0.305
  227. gendstat: PPN Iberia_MN 0.121
  228. gendstat: PPN Russia_MA1.SG 0.486
  229. gendstat: PPN Georgia_Satsurblia.SG -0.281
  230. gendstat: PPN Kostenki14.SG 0.552
  231. gendstat: PPN Russia_Karelia_HG 0.112
  232. gendstat: PPN Serbia_Iron_Gates_HG 0.908
  233. gendstat: PPN Tyumen_HG -0.571
  234. gendstat: PPN Onge.DG 1.337
  235. gendstat: PPN Russia_Shamanka_EN.SG -1.282
  236. gendstat: Anatolia_N Iberia_MN 0.557
  237. gendstat: Anatolia_N Russia_MA1.SG 0.798
  238. gendstat: Anatolia_N Georgia_Satsurblia.SG -0.109
  239. gendstat: Anatolia_N Kostenki14.SG 0.882
  240. gendstat: Anatolia_N Russia_Karelia_HG 0.383
  241. gendstat: Anatolia_N Serbia_Iron_Gates_HG 1.723
  242. gendstat: Anatolia_N Tyumen_HG -0.458
  243. gendstat: Anatolia_N Onge.DG 1.884
  244. gendstat: Anatolia_N Russia_Shamanka_EN.SG -1.398
  245. gendstat: Iberia_MN Russia_MA1.SG 0.464
  246. gendstat: Iberia_MN Georgia_Satsurblia.SG -0.383
  247. gendstat: Iberia_MN Kostenki14.SG 0.497
  248. gendstat: Iberia_MN Russia_Karelia_HG 0.018
  249. gendstat: Iberia_MN Serbia_Iron_Gates_HG 1.006
  250. gendstat: Iberia_MN Tyumen_HG -0.717
  251. gendstat: Iberia_MN Onge.DG 1.380
  252. gendstat: Iberia_MN Russia_Shamanka_EN.SG -1.616
  253. gendstat: Russia_MA1.SG Georgia_Satsurblia.SG -0.704
  254. gendstat: Russia_MA1.SG Kostenki14.SG 0.025
  255. gendstat: Russia_MA1.SG Russia_Karelia_HG -0.407
  256. gendstat: Russia_MA1.SG Serbia_Iron_Gates_HG 0.174
  257. gendstat: Russia_MA1.SG Tyumen_HG -1.074
  258. gendstat: Russia_MA1.SG Onge.DG 0.733
  259. gendstat: Russia_MA1.SG Russia_Shamanka_EN.SG -1.731
  260. gendstat: Georgia_Satsurblia.SG Kostenki14.SG 0.763
  261. gendstat: Georgia_Satsurblia.SG Russia_Karelia_HG 0.367
  262. gendstat: Georgia_Satsurblia.SG Serbia_Iron_Gates_HG 1.031
  263. gendstat: Georgia_Satsurblia.SG Tyumen_HG -0.300
  264. gendstat: Georgia_Satsurblia.SG Onge.DG 1.492
  265. gendstat: Georgia_Satsurblia.SG Russia_Shamanka_EN.SG -0.825
  266. gendstat: Kostenki14.SG Russia_Karelia_HG -0.451
  267. gendstat: Kostenki14.SG Serbia_Iron_Gates_HG 0.144
  268. gendstat: Kostenki14.SG Tyumen_HG -1.044
  269. gendstat: Kostenki14.SG Onge.DG 0.693
  270. gendstat: Kostenki14.SG Russia_Shamanka_EN.SG -1.729
  271. gendstat: Russia_Karelia_HG Serbia_Iron_Gates_HG 0.758
  272. gendstat: Russia_Karelia_HG Tyumen_HG -0.738
  273. gendstat: Russia_Karelia_HG Onge.DG 1.240
  274. gendstat: Russia_Karelia_HG Russia_Shamanka_EN.SG -1.382
  275. gendstat: Serbia_Iron_Gates_HG Tyumen_HG -1.465
  276. gendstat: Serbia_Iron_Gates_HG Onge.DG 0.732
  277. gendstat: Serbia_Iron_Gates_HG Russia_Shamanka_EN.SG -2.680
  278. gendstat: Tyumen_HG Onge.DG 1.853
  279. gendstat: Tyumen_HG Russia_Shamanka_EN.SG -0.498
  280. gendstat: Onge.DG Russia_Shamanka_EN.SG -3.453
  281.  
  282. ## end of run
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