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  1. ----------------------------------------
  2. Failed building wheel for rpy2
  3. Running setup.py clean for rpy2
  4. Failed to build rpy2
  5. Installing collected packages: rpy2
  6. Running setup.py install for rpy2 ... error
  7. Complete output from command /Users/me/Applications/anaconda3/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/c2/tn3m3j415fq7hhh4zwwqrphw0000gn/T/pip-build-v9hm43qh/rpy2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('rn', 'n');f.close();exec(compile(code, __file__, 'exec'))" install --record /var/folders/c2/tn3m3j415fq7hhh4zwwqrphw0000gn/T/pip-1onyudah-record/install-record.txt --single-version-externally-managed --compile:
  8. R version 3.4.1 (2017-06-30) -- "Single Candle"
  9. /usr/local/Cellar/r/3.4.1_1/lib/R/bin/R CMD config --ldflags
  10. /usr/local/Cellar/r/3.4.1_1/lib/R/bin/R CMD config --cppflags
  11.  
  12. Compilation parameters for rpy2's C components:
  13. include_dirs = ['/usr/local/Cellar/r/3.4.1_1/lib/R/include']
  14. library_dirs = ['/usr/local/opt/gettext/lib', '/usr/local/opt/readline/lib', '/usr/local/lib', '/usr/local/opt/gettext/lib', '/usr/local/opt/readline/lib', '/usr/local/lib', '/usr/local/Cellar/r/3.4.1_1/lib/R/lib']
  15. libraries = ['R', 'pcre', 'lzma', 'bz2', 'z', 'icucore', 'm', 'iconv']
  16. extra_link_args = []
  17.  
  18. running install
  19. running build
  20. running build_py
  21. creating build
  22. creating build/lib.macosx-10.9-x86_64-3.6
  23. creating build/lib.macosx-10.9-x86_64-3.6/rpy2
  24. copying ./rpy/__init__.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2
  25. copying ./rpy/rpy_classic.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2
  26. copying ./rpy/situation.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2
  27. copying ./rpy/tests.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2
  28. copying ./rpy/tests_rpy_classic.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2
  29. creating build/lib.macosx-10.9-x86_64-3.6/rpy2/rlike
  30. copying ./rpy/rlike/__init__.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rlike
  31. copying ./rpy/rlike/container.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rlike
  32. copying ./rpy/rlike/functional.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rlike
  33. copying ./rpy/rlike/indexing.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rlike
  34. creating build/lib.macosx-10.9-x86_64-3.6/rpy2/rlike/tests
  35. copying ./rpy/rlike/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rlike/tests
  36. copying ./rpy/rlike/tests/test_container.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rlike/tests
  37. copying ./rpy/rlike/tests/test_functional.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rlike/tests
  38. copying ./rpy/rlike/tests/test_indexing.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rlike/tests
  39. creating build/lib.macosx-10.9-x86_64-3.6/rpy2/rinterface
  40. copying ./rpy/rinterface/__init__.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rinterface
  41. creating build/lib.macosx-10.9-x86_64-3.6/rpy2/rinterface/tests
  42. copying ./rpy/rinterface/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rinterface/tests
  43. copying ./rpy/rinterface/tests/test_Device.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rinterface/tests
  44. copying ./rpy/rinterface/tests/test_EmbeddedR.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rinterface/tests
  45. copying ./rpy/rinterface/tests/test_Sexp.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rinterface/tests
  46. copying ./rpy/rinterface/tests/test_SexpClosure.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rinterface/tests
  47. copying ./rpy/rinterface/tests/test_SexpEnvironment.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rinterface/tests
  48. copying ./rpy/rinterface/tests/test_SexpExtPtr.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rinterface/tests
  49. copying ./rpy/rinterface/tests/test_SexpSymbol.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rinterface/tests
  50. copying ./rpy/rinterface/tests/test_SexpVector.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rinterface/tests
  51. copying ./rpy/rinterface/tests/test_SexpVectorNumeric.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/rinterface/tests
  52. creating build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects
  53. copying ./rpy/robjects/__init__.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects
  54. copying ./rpy/robjects/constants.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects
  55. copying ./rpy/robjects/conversion.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects
  56. copying ./rpy/robjects/environments.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects
  57. copying ./rpy/robjects/functions.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects
  58. copying ./rpy/robjects/help.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects
  59. copying ./rpy/robjects/language.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects
  60. copying ./rpy/robjects/methods.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects
  61. copying ./rpy/robjects/numpy2ri.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects
  62. copying ./rpy/robjects/packages.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects
  63. copying ./rpy/robjects/packages_utils.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects
  64. copying ./rpy/robjects/pandas2ri.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects
  65. copying ./rpy/robjects/robject.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects
  66. copying ./rpy/robjects/vectors.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects
  67. creating build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/tests
  68. copying ./rpy/robjects/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/tests
  69. copying ./rpy/robjects/tests/testArray.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/tests
  70. copying ./rpy/robjects/tests/testDataFrame.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/tests
  71. copying ./rpy/robjects/tests/testEnvironment.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/tests
  72. copying ./rpy/robjects/tests/testFormula.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/tests
  73. copying ./rpy/robjects/tests/testFunction.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/tests
  74. copying ./rpy/robjects/tests/testHelp.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/tests
  75. copying ./rpy/robjects/tests/testLanguage.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/tests
  76. copying ./rpy/robjects/tests/testMethods.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/tests
  77. copying ./rpy/robjects/tests/testNumpyConversions.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/tests
  78. copying ./rpy/robjects/tests/testPackages.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/tests
  79. copying ./rpy/robjects/tests/testPandasConversions.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/tests
  80. copying ./rpy/robjects/tests/testRObject.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/tests
  81. copying ./rpy/robjects/tests/testRobjects.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/tests
  82. copying ./rpy/robjects/tests/testVector.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/tests
  83. creating build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/lib
  84. copying ./rpy/robjects/lib/__init__.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/lib
  85. copying ./rpy/robjects/lib/dbplyr.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/lib
  86. copying ./rpy/robjects/lib/dplyr.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/lib
  87. copying ./rpy/robjects/lib/ggplot2.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/lib
  88. copying ./rpy/robjects/lib/grdevices.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/lib
  89. copying ./rpy/robjects/lib/grid.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/lib
  90. copying ./rpy/robjects/lib/test_dplyr.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/lib
  91. copying ./rpy/robjects/lib/tidyr.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/lib
  92. creating build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/lib/tests
  93. copying ./rpy/robjects/lib/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/lib/tests
  94. copying ./rpy/robjects/lib/tests/test_dplyr.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/lib/tests
  95. copying ./rpy/robjects/lib/tests/test_ggplot2.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/lib/tests
  96. copying ./rpy/robjects/lib/tests/test_grdevices.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/robjects/lib/tests
  97. creating build/lib.macosx-10.9-x86_64-3.6/rpy2/interactive
  98. copying ./rpy/interactive/__init__.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/interactive
  99. copying ./rpy/interactive/packages.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/interactive
  100. copying ./rpy/interactive/process_revents.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/interactive
  101. creating build/lib.macosx-10.9-x86_64-3.6/rpy2/interactive/tests
  102. copying ./rpy/interactive/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/interactive/tests
  103. creating build/lib.macosx-10.9-x86_64-3.6/rpy2/ipython
  104. copying ./rpy/ipython/__init__.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/ipython
  105. copying ./rpy/ipython/ggplot.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/ipython
  106. copying ./rpy/ipython/html.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/ipython
  107. copying ./rpy/ipython/rmagic.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/ipython
  108. creating build/lib.macosx-10.9-x86_64-3.6/rpy2/ipython/tests
  109. copying ./rpy/ipython/tests/__init__.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/ipython/tests
  110. copying ./rpy/ipython/tests/test_rmagic.py -> build/lib.macosx-10.9-x86_64-3.6/rpy2/ipython/tests
  111. running build_clib
  112. building 'r_utils' library
  113. creating build/temp.macosx-10.9-x86_64-3.6
  114. creating build/temp.macosx-10.9-x86_64-3.6/rpy
  115. creating build/temp.macosx-10.9-x86_64-3.6/rpy/rinterface
  116. clang -DNDEBUG -fwrapv -O2 -Wall -Wstrict-prototypes -Qunused-arguments -Qunused-arguments -I./rpy/rinterface -I/usr/local/Cellar/r/3.4.1_1/lib/R/include -c ./rpy/rinterface/r_utils.c -o build/temp.macosx-10.9-x86_64-3.6/./rpy/rinterface/r_utils.o
  117. In file included from ./rpy/rinterface/r_utils.c:24:
  118. In file included from /usr/local/Cellar/r/3.4.1_1/lib/R/include/Rdefines.h:36:
  119. /usr/local/Cellar/r/3.4.1_1/lib/R/include/R_ext/Memory.h:48:17: warning: this function declaration is not a prototype [-Wstrict-prototypes]
  120. int R_gc_running();
  121. ^
  122. void
  123. In file included from ./rpy/rinterface/r_utils.c:24:
  124. In file included from /usr/local/Cellar/r/3.4.1_1/lib/R/include/Rdefines.h:40:
  125. In file included from /usr/local/Cellar/r/3.4.1_1/lib/R/include/Rinternals.h:51:
  126. /usr/local/Cellar/r/3.4.1_1/lib/R/include/R_ext/Rdynload.h:38:26: warning: this function declaration is not a prototype [-Wstrict-prototypes]
  127. typedef void * (*DL_FUNC)();
  128. ^
  129. void
  130. In file included from ./rpy/rinterface/r_utils.c:24:
  131. In file included from /usr/local/Cellar/r/3.4.1_1/lib/R/include/Rdefines.h:40:
  132. /usr/local/Cellar/r/3.4.1_1/lib/R/include/Rinternals.h:919:26: warning: this function declaration is not a prototype [-Wstrict-prototypes]
  133. const char *R_curErrorBuf();
  134. ^
  135. void
  136. 3 warnings generated.
  137. x86_64-apple-darwin13.4.0-ar rc build/temp.macosx-10.9-x86_64-3.6/libr_utils.a build/temp.macosx-10.9-x86_64-3.6/./rpy/rinterface/r_utils.o
  138. unable to execute 'x86_64-apple-darwin13.4.0-ar': No such file or directory
  139. error: command 'x86_64-apple-darwin13.4.0-ar' failed with exit status 1
  140.  
  141. ----------------------------------------
  142. Command "/Users/me/Applications/anaconda3/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/c2/tn3m3j415fq7hhh4zwwqrphw0000gn/T/pip-build-v9hm43qh/rpy2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('rn', 'n');f.close();exec(compile(code, __file__, 'exec'))" install --record /var/folders/c2/tn3m3j415fq7hhh4zwwqrphw0000gn/T/pip-1onyudah-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/c2/tn3m3j415fq7hhh4zwwqrphw0000gn/T/pip-build-v9hm43qh/rpy2/
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