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- Using Spark's default log4j profile: org/apache/spark/log4j-defaults.properties
- Setting default log level to "WARN".
- To adjust logging level use sc.setLogLevel(newLevel). For SparkR, use setLogLevel(newLevel).
- 18/03/09 14:41:28 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- [Stage 0:> (0 + 4) / 4]18/03/09 14:41:31 ERROR Executor: Exception in task 3.0 in stage 0.0 (TID 3)
- org.apache.spark.api.python.PythonException: Traceback (most recent call last):
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/worker.py", line 177, in main
- process()
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/worker.py", line 172, in process
- serializer.dump_stream(func(split_index, iterator), outfile)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 268, in dump_stream
- vs = list(itertools.islice(iterator, batch))
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 144, in load_stream
- yield self._read_with_length(stream)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 169, in _read_with_length
- return self.loads(obj)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 455, in loads
- return pickle.loads(obj, encoding=encoding)
- AttributeError: Can't get attribute 'Individual' on <module 'deap.creator' from '/usr/local/lib/python3.6/site-packages/deap-1.2.2-py3.6-macosx-10.13-x86_64.egg/deap/creator.py'>
- at org.apache.spark.api.python.PythonRunner$$anon$1.read(PythonRDD.scala:193)
- at org.apache.spark.api.python.PythonRunner$$anon$1.<init>(PythonRDD.scala:234)
- at org.apache.spark.api.python.PythonRunner.compute(PythonRDD.scala:152)
- at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:63)
- at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
- at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
- at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
- at org.apache.spark.scheduler.Task.run(Task.scala:108)
- at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:338)
- at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
- at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
- at java.lang.Thread.run(Thread.java:748)
- 18/03/09 14:41:31 ERROR Executor: Exception in task 2.0 in stage 0.0 (TID 2)
- org.apache.spark.api.python.PythonException: Traceback (most recent call last):
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/worker.py", line 177, in main
- process()
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/worker.py", line 172, in process
- serializer.dump_stream(func(split_index, iterator), outfile)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 268, in dump_stream
- vs = list(itertools.islice(iterator, batch))
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 144, in load_stream
- yield self._read_with_length(stream)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 169, in _read_with_length
- return self.loads(obj)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 455, in loads
- return pickle.loads(obj, encoding=encoding)
- AttributeError: Can't get attribute 'Individual' on <module 'deap.creator' from '/usr/local/lib/python3.6/site-packages/deap-1.2.2-py3.6-macosx-10.13-x86_64.egg/deap/creator.py'>
- at org.apache.spark.api.python.PythonRunner$$anon$1.read(PythonRDD.scala:193)
- at org.apache.spark.api.python.PythonRunner$$anon$1.<init>(PythonRDD.scala:234)
- at org.apache.spark.api.python.PythonRunner.compute(PythonRDD.scala:152)
- at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:63)
- at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
- at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
- at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
- at org.apache.spark.scheduler.Task.run(Task.scala:108)
- at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:338)
- at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
- at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
- at java.lang.Thread.run(Thread.java:748)
- 18/03/09 14:41:31 ERROR Executor: Exception in task 1.0 in stage 0.0 (TID 1)
- org.apache.spark.api.python.PythonException: Traceback (most recent call last):
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/worker.py", line 177, in main
- process()
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/worker.py", line 172, in process
- serializer.dump_stream(func(split_index, iterator), outfile)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 268, in dump_stream
- vs = list(itertools.islice(iterator, batch))
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 144, in load_stream
- yield self._read_with_length(stream)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 169, in _read_with_length
- return self.loads(obj)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 455, in loads
- return pickle.loads(obj, encoding=encoding)
- AttributeError: Can't get attribute 'Individual' on <module 'deap.creator' from '/usr/local/lib/python3.6/site-packages/deap-1.2.2-py3.6-macosx-10.13-x86_64.egg/deap/creator.py'>
- at org.apache.spark.api.python.PythonRunner$$anon$1.read(PythonRDD.scala:193)
- at org.apache.spark.api.python.PythonRunner$$anon$1.<init>(PythonRDD.scala:234)
- at org.apache.spark.api.python.PythonRunner.compute(PythonRDD.scala:152)
- at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:63)
- at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
- at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
- at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
- at org.apache.spark.scheduler.Task.run(Task.scala:108)
- at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:338)
- at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
- at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
- at java.lang.Thread.run(Thread.java:748)
- 18/03/09 14:41:31 ERROR Executor: Exception in task 0.0 in stage 0.0 (TID 0)
- org.apache.spark.api.python.PythonException: Traceback (most recent call last):
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/worker.py", line 177, in main
- process()
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/worker.py", line 172, in process
- serializer.dump_stream(func(split_index, iterator), outfile)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 268, in dump_stream
- vs = list(itertools.islice(iterator, batch))
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 144, in load_stream
- yield self._read_with_length(stream)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 169, in _read_with_length
- return self.loads(obj)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 455, in loads
- return pickle.loads(obj, encoding=encoding)
- AttributeError: Can't get attribute 'Individual' on <module 'deap.creator' from '/usr/local/lib/python3.6/site-packages/deap-1.2.2-py3.6-macosx-10.13-x86_64.egg/deap/creator.py'>
- at org.apache.spark.api.python.PythonRunner$$anon$1.read(PythonRDD.scala:193)
- at org.apache.spark.api.python.PythonRunner$$anon$1.<init>(PythonRDD.scala:234)
- at org.apache.spark.api.python.PythonRunner.compute(PythonRDD.scala:152)
- at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:63)
- at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
- at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
- at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
- at org.apache.spark.scheduler.Task.run(Task.scala:108)
- at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:338)
- at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
- at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
- at java.lang.Thread.run(Thread.java:748)
- 18/03/09 14:41:31 WARN TaskSetManager: Lost task 0.0 in stage 0.0 (TID 0, localhost, executor driver): org.apache.spark.api.python.PythonException: Traceback (most recent call last):
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/worker.py", line 177, in main
- process()
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/worker.py", line 172, in process
- serializer.dump_stream(func(split_index, iterator), outfile)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 268, in dump_stream
- vs = list(itertools.islice(iterator, batch))
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 144, in load_stream
- yield self._read_with_length(stream)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 169, in _read_with_length
- return self.loads(obj)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 455, in loads
- return pickle.loads(obj, encoding=encoding)
- AttributeError: Can't get attribute 'Individual' on <module 'deap.creator' from '/usr/local/lib/python3.6/site-packages/deap-1.2.2-py3.6-macosx-10.13-x86_64.egg/deap/creator.py'>
- at org.apache.spark.api.python.PythonRunner$$anon$1.read(PythonRDD.scala:193)
- at org.apache.spark.api.python.PythonRunner$$anon$1.<init>(PythonRDD.scala:234)
- at org.apache.spark.api.python.PythonRunner.compute(PythonRDD.scala:152)
- at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:63)
- at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
- at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
- at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
- at org.apache.spark.scheduler.Task.run(Task.scala:108)
- at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:338)
- at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
- at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
- at java.lang.Thread.run(Thread.java:748)
- 18/03/09 14:41:31 ERROR TaskSetManager: Task 0 in stage 0.0 failed 1 times; aborting job
- Traceback (most recent call last):
- File "test-deap.py", line 45, in <module>
- stats=stats, halloffame=hof, verbose=True)
- File "/usr/local/lib/python3.6/site-packages/deap-1.2.2-py3.6-macosx-10.13-x86_64.egg/deap/algorithms.py", line 150, in eaSimple
- fitnesses = toolbox.map(toolbox.evaluate, invalid_ind)
- File "test-deap.py", line 32, in sparkMap
- return sc.parallelize(population).map(algorithm).collect()
- File "/usr/local/lib/python3.6/site-packages/pyspark/rdd.py", line 809, in collect
- port = self.ctx._jvm.PythonRDD.collectAndServe(self._jrdd.rdd())
- File "/usr/local/lib/python3.6/site-packages/py4j/java_gateway.py", line 1133, in __call__
- answer, self.gateway_client, self.target_id, self.name)
- File "/usr/local/lib/python3.6/site-packages/py4j/protocol.py", line 319, in get_return_value
- format(target_id, ".", name), value)
- py4j.protocol.Py4JJavaError: An error occurred while calling z:org.apache.spark.api.python.PythonRDD.collectAndServe.
- : org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 0.0 failed 1 times, most recent failure: Lost task 0.0 in stage 0.0 (TID 0, localhost, executor driver): org.apache.spark.api.python.PythonException: Traceback (most recent call last):
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/worker.py", line 177, in main
- process()
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/worker.py", line 172, in process
- serializer.dump_stream(func(split_index, iterator), outfile)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 268, in dump_stream
- vs = list(itertools.islice(iterator, batch))
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 144, in load_stream
- yield self._read_with_length(stream)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 169, in _read_with_length
- return self.loads(obj)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 455, in loads
- return pickle.loads(obj, encoding=encoding)
- AttributeError: Can't get attribute 'Individual' on <module 'deap.creator' from '/usr/local/lib/python3.6/site-packages/deap-1.2.2-py3.6-macosx-10.13-x86_64.egg/deap/creator.py'>
- at org.apache.spark.api.python.PythonRunner$$anon$1.read(PythonRDD.scala:193)
- at org.apache.spark.api.python.PythonRunner$$anon$1.<init>(PythonRDD.scala:234)
- at org.apache.spark.api.python.PythonRunner.compute(PythonRDD.scala:152)
- at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:63)
- at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
- at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
- at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
- at org.apache.spark.scheduler.Task.run(Task.scala:108)
- at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:338)
- at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
- at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
- at java.lang.Thread.run(Thread.java:748)
- Driver stacktrace:
- at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1517)
- at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1505)
- at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1504)
- at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
- at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
- at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1504)
- at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:814)
- at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:814)
- at scala.Option.foreach(Option.scala:257)
- at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:814)
- at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1732)
- at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1687)
- at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1676)
- at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
- at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:630)
- at org.apache.spark.SparkContext.runJob(SparkContext.scala:2029)
- at org.apache.spark.SparkContext.runJob(SparkContext.scala:2050)
- at org.apache.spark.SparkContext.runJob(SparkContext.scala:2069)
- at org.apache.spark.SparkContext.runJob(SparkContext.scala:2094)
- at org.apache.spark.rdd.RDD$$anonfun$collect$1.apply(RDD.scala:936)
- at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
- at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
- at org.apache.spark.rdd.RDD.withScope(RDD.scala:362)
- at org.apache.spark.rdd.RDD.collect(RDD.scala:935)
- at org.apache.spark.api.python.PythonRDD$.collectAndServe(PythonRDD.scala:467)
- at org.apache.spark.api.python.PythonRDD.collectAndServe(PythonRDD.scala)
- at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
- at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
- at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
- at java.lang.reflect.Method.invoke(Method.java:498)
- at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
- at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
- at py4j.Gateway.invoke(Gateway.java:280)
- at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
- at py4j.commands.CallCommand.execute(CallCommand.java:79)
- at py4j.GatewayConnection.run(GatewayConnection.java:214)
- at java.lang.Thread.run(Thread.java:748)
- Caused by: org.apache.spark.api.python.PythonException: Traceback (most recent call last):
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/worker.py", line 177, in main
- process()
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/worker.py", line 172, in process
- serializer.dump_stream(func(split_index, iterator), outfile)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 268, in dump_stream
- vs = list(itertools.islice(iterator, batch))
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 144, in load_stream
- yield self._read_with_length(stream)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 169, in _read_with_length
- return self.loads(obj)
- File "/usr/local/lib/python3.6/site-packages/pyspark/python/lib/pyspark.zip/pyspark/serializers.py", line 455, in loads
- return pickle.loads(obj, encoding=encoding)
- AttributeError: Can't get attribute 'Individual' on <module 'deap.creator' from '/usr/local/lib/python3.6/site-packages/deap-1.2.2-py3.6-macosx-10.13-x86_64.egg/deap/creator.py'>
- at org.apache.spark.api.python.PythonRunner$$anon$1.read(PythonRDD.scala:193)
- at org.apache.spark.api.python.PythonRunner$$anon$1.<init>(PythonRDD.scala:234)
- at org.apache.spark.api.python.PythonRunner.compute(PythonRDD.scala:152)
- at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:63)
- at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
- at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
- at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
- at org.apache.spark.scheduler.Task.run(Task.scala:108)
- at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:338)
- at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
- at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
- ... 1 more
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