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misnomer001

turkey_Isparta_eba

misnomer001
Feb 18th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. S1: anatolia
  5. indivname: anatolia.ind
  6. snpname: anatolia.snp
  7. genotypename: anatolia.geno
  8. popleft: left
  9. popright: right
  10. details: YES
  11. allsnps: YES
  12. inbreed: NO
  13. ## qpAdm version: 1520
  14. seed: 1992995164
  15. inbreed set NO
  16. inbreed set NO
  17. tmp: /tmp/fsx.7336
  18.  
  19. left pops:
  20. Turkey_EBA
  21. Turkey_TellKurdu_EC
  22. Armenia_EBA_KuraAraxes
  23.  
  24. right pops:
  25. Mbuti.DG
  26. ONG.SG
  27. EHG
  28. CHG
  29. England_Mesolithic
  30. Morocco_Iberomaurusian
  31. WSHG
  32. Tarim_EMBA1
  33. Mongolia_North_N
  34. Turkey_Epipaleolithic
  35. Iran_GanjDareh_N
  36. PPN
  37. Russia_Steppe_Eneolithic
  38.  
  39. codimension 1
  40. f4info:
  41. f4rank: 1 dof: 11 chisq: 19.423 tail: 0.0539027451 dofdiff: 13 chisqdiff: -19.423 taildiff: 1
  42. B:
  43. scale 1.000
  44. ONG.SG 0.139
  45. EHG 0.325
  46. CHG 1.073
  47. England_Mesolithic -0.459
  48. Morocco_Iberomaurusian -0.808
  49. WSHG 0.786
  50. Tarim_EMBA1 1.102
  51. Mongolia_North_N 0.200
  52. Turkey_Epipaleolithic -1.625
  53. Iran_GanjDareh_N 0.728
  54. PPN -2.034
  55. Russia_Steppe_Eneolithic 0.825
  56. A:
  57. scale 219.436
  58. Turkey_TellKurdu_EC -0.955
  59. Armenia_EBA_KuraAraxes 1.043
  60.  
  61.  
  62. full rank
  63. f4info:
  64. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 19.423 taildiff: 0.0539027451
  65. B:
  66. scale 211.085 180.663
  67. ONG.SG -0.365 -0.075
  68. EHG -0.687 -0.090
  69. CHG -1.591 0.469
  70. England_Mesolithic -0.036 -0.778
  71. Morocco_Iberomaurusian 0.752 -0.687
  72. WSHG -1.134 0.343
  73. Tarim_EMBA1 -1.389 0.632
  74. Mongolia_North_N -0.443 -0.058
  75. Turkey_Epipaleolithic 0.374 -2.385
  76. Iran_GanjDareh_N -0.957 0.393
  77. PPN 1.532 -2.058
  78. Russia_Steppe_Eneolithic -1.219 0.303
  79. A:
  80. scale 1.414 1.414
  81. Turkey_TellKurdu_EC 1.414 0.000
  82. Armenia_EBA_KuraAraxes 0.000 1.414
  83.  
  84.  
  85. best coefficients: 0.522 0.478
  86. totmean: 0.522 0.478
  87. boot mean: 0.522 0.478
  88. std. errors: 0.032 0.032
  89.  
  90. error covariance (* 1,000,000)
  91. 997 -997
  92. -997 997
  93.  
  94.  
  95. summ: Turkey_EBA 2 0.053903 0.522 0.478 997 -997 997
  96.  
  97. fixed pat wt dof chisq tail prob
  98. 00 0 11 19.423 0.0539027 0.522 0.478
  99. 01 1 12 208.563 0 1.000 0.000
  100. 10 1 12 204.860 0 0.000 1.000
  101. best pat: 00 0.0539027 - -
  102. best pat: 10 3.23317e-37 chi(nested): 185.437 p-value for nested model: 3.15099e-42
  103.  
  104. coeffs: 0.522 0.478
  105.  
  106. ## dscore:: f_4(Base, Fit, Rbase, right2)
  107. ## genstat:: f_4(Base, Fit, right1, right2)
  108.  
  109. details: Turkey_TellKurdu_EC ONG.SG -0.001728 -1.525079
  110. details: Armenia_EBA_KuraAraxes ONG.SG -0.000413 -0.348238
  111. dscore: ONG.SG f4: -0.001100 Z: -1.127225
  112.  
  113. details: Turkey_TellKurdu_EC EHG -0.003253 -2.491549
  114. details: Armenia_EBA_KuraAraxes EHG -0.000498 -0.371923
  115. dscore: EHG f4: -0.001936 Z: -1.737160
  116.  
  117. details: Turkey_TellKurdu_EC CHG -0.007538 -5.933299
  118. details: Armenia_EBA_KuraAraxes CHG 0.002594 1.962557
  119. dscore: CHG f4: -0.002696 Z: -2.468698
  120.  
  121. details: Turkey_TellKurdu_EC England_Mesolithic -0.000170 -0.114221
  122. details: Armenia_EBA_KuraAraxes England_Mesolithic -0.004305 -2.790141
  123. dscore: England_Mesolithic f4: -0.002146 Z: -1.680877
  124.  
  125. details: Turkey_TellKurdu_EC Morocco_Iberomaurusian 0.003562 3.459970
  126. details: Armenia_EBA_KuraAraxes Morocco_Iberomaurusian -0.003800 -3.666321
  127. dscore: Morocco_Iberomaurusian f4: 0.000044 Z: 0.050603
  128.  
  129. details: Turkey_TellKurdu_EC WSHG -0.005373 -4.152790
  130. details: Armenia_EBA_KuraAraxes WSHG 0.001897 1.413965
  131. dscore: WSHG f4: -0.001898 Z: -1.709394
  132.  
  133. details: Turkey_TellKurdu_EC Tarim_EMBA1 -0.006578 -5.302167
  134. details: Armenia_EBA_KuraAraxes Tarim_EMBA1 0.003497 2.620806
  135. dscore: Tarim_EMBA1 f4: -0.001763 Z: -1.622826
  136.  
  137. details: Turkey_TellKurdu_EC Mongolia_North_N -0.002097 -1.889837
  138. details: Armenia_EBA_KuraAraxes Mongolia_North_N -0.000322 -0.284392
  139. dscore: Mongolia_North_N f4: -0.001249 Z: -1.330236
  140.  
  141. details: Turkey_TellKurdu_EC Turkey_Epipaleolithic 0.001769 1.095362
  142. details: Armenia_EBA_KuraAraxes Turkey_Epipaleolithic -0.013201 -7.914150
  143. dscore: Turkey_Epipaleolithic f4: -0.005385 Z: -3.780787
  144.  
  145. details: Turkey_TellKurdu_EC Iran_GanjDareh_N -0.004536 -4.333906
  146. details: Armenia_EBA_KuraAraxes Iran_GanjDareh_N 0.002176 1.997932
  147. dscore: Iran_GanjDareh_N f4: -0.001328 Z: -1.503715
  148.  
  149. details: Turkey_TellKurdu_EC PPN 0.007255 6.243968
  150. details: Armenia_EBA_KuraAraxes PPN -0.011392 -9.562745
  151. dscore: PPN f4: -0.001656 Z: -1.701125
  152.  
  153. details: Turkey_TellKurdu_EC Russia_Steppe_Eneolithic -0.005773 -5.115026
  154. details: Armenia_EBA_KuraAraxes Russia_Steppe_Eneolithic 0.001679 1.470230
  155. dscore: Russia_Steppe_Eneolithic f4: -0.002212 Z: -2.326397
  156.  
  157. gendstat: Mbuti.DG ONG.SG -1.127
  158. gendstat: Mbuti.DG EHG -1.737
  159. gendstat: Mbuti.DG CHG -2.469
  160. gendstat: Mbuti.DG England_Mesolithic -1.681
  161. gendstat: Mbuti.DG Morocco_Iberomaurusian 0.051
  162. gendstat: Mbuti.DG WSHG -1.709
  163. gendstat: Mbuti.DG Tarim_EMBA1 -1.623
  164. gendstat: Mbuti.DG Mongolia_North_N -1.330
  165. gendstat: Mbuti.DG Turkey_Epipaleolithic -3.781
  166. gendstat: Mbuti.DG Iran_GanjDareh_N -1.504
  167. gendstat: Mbuti.DG PPN -1.701
  168. gendstat: Mbuti.DG Russia_Steppe_Eneolithic -2.326
  169. gendstat: ONG.SG EHG -0.762
  170. gendstat: ONG.SG CHG -1.454
  171. gendstat: ONG.SG England_Mesolithic -0.841
  172. gendstat: ONG.SG Morocco_Iberomaurusian 1.073
  173. gendstat: ONG.SG WSHG -0.737
  174. gendstat: ONG.SG Tarim_EMBA1 -0.671
  175. gendstat: ONG.SG Mongolia_North_N -0.175
  176. gendstat: ONG.SG Turkey_Epipaleolithic -2.892
  177. gendstat: ONG.SG Iran_GanjDareh_N -0.240
  178. gendstat: ONG.SG PPN -0.526
  179. gendstat: ONG.SG Russia_Steppe_Eneolithic -1.095
  180. gendstat: EHG CHG -0.641
  181. gendstat: EHG England_Mesolithic -0.162
  182. gendstat: EHG Morocco_Iberomaurusian 1.702
  183. gendstat: EHG WSHG 0.039
  184. gendstat: EHG Tarim_EMBA1 0.176
  185. gendstat: EHG Mongolia_North_N 0.681
  186. gendstat: EHG Turkey_Epipaleolithic -2.364
  187. gendstat: EHG Iran_GanjDareh_N 0.585
  188. gendstat: EHG PPN 0.253
  189. gendstat: EHG Russia_Steppe_Eneolithic -0.283
  190. gendstat: CHG England_Mesolithic 0.391
  191. gendstat: CHG Morocco_Iberomaurusian 2.365
  192. gendstat: CHG WSHG 0.673
  193. gendstat: CHG Tarim_EMBA1 0.809
  194. gendstat: CHG Mongolia_North_N 1.301
  195. gendstat: CHG Turkey_Epipaleolithic -1.788
  196. gendstat: CHG Iran_GanjDareh_N 1.346
  197. gendstat: CHG PPN 0.935
  198. gendstat: CHG Russia_Steppe_Eneolithic 0.476
  199. gendstat: England_Mesolithic Morocco_Iberomaurusian 1.709
  200. gendstat: England_Mesolithic WSHG 0.194
  201. gendstat: England_Mesolithic Tarim_EMBA1 0.297
  202. gendstat: England_Mesolithic Mongolia_North_N 0.730
  203. gendstat: England_Mesolithic Turkey_Epipaleolithic -2.119
  204. gendstat: England_Mesolithic Iran_GanjDareh_N 0.655
  205. gendstat: England_Mesolithic PPN 0.384
  206. gendstat: England_Mesolithic Russia_Steppe_Eneolithic -0.054
  207. gendstat: Morocco_Iberomaurusian WSHG -1.627
  208. gendstat: Morocco_Iberomaurusian Tarim_EMBA1 -1.539
  209. gendstat: Morocco_Iberomaurusian Mongolia_North_N -1.216
  210. gendstat: Morocco_Iberomaurusian Turkey_Epipaleolithic -3.704
  211. gendstat: Morocco_Iberomaurusian Iran_GanjDareh_N -1.351
  212. gendstat: Morocco_Iberomaurusian PPN -1.754
  213. gendstat: Morocco_Iberomaurusian Russia_Steppe_Eneolithic -2.099
  214. gendstat: WSHG Tarim_EMBA1 0.153
  215. gendstat: WSHG Mongolia_North_N 0.655
  216. gendstat: WSHG Turkey_Epipaleolithic -2.321
  217. gendstat: WSHG Iran_GanjDareh_N 0.543
  218. gendstat: WSHG PPN 0.216
  219. gendstat: WSHG Russia_Steppe_Eneolithic -0.315
  220. gendstat: Tarim_EMBA1 Mongolia_North_N 0.536
  221. gendstat: Tarim_EMBA1 Turkey_Epipaleolithic -2.395
  222. gendstat: Tarim_EMBA1 Iran_GanjDareh_N 0.430
  223. gendstat: Tarim_EMBA1 PPN 0.095
  224. gendstat: Tarim_EMBA1 Russia_Steppe_Eneolithic -0.473
  225. gendstat: Mongolia_North_N Turkey_Epipaleolithic -3.001
  226. gendstat: Mongolia_North_N Iran_GanjDareh_N -0.087
  227. gendstat: Mongolia_North_N PPN -0.405
  228. gendstat: Mongolia_North_N Russia_Steppe_Eneolithic -1.002
  229. gendstat: Turkey_Epipaleolithic Iran_GanjDareh_N 2.885
  230. gendstat: Turkey_Epipaleolithic PPN 2.839
  231. gendstat: Turkey_Epipaleolithic Russia_Steppe_Eneolithic 2.230
  232. gendstat: Iran_GanjDareh_N PPN -0.332
  233. gendstat: Iran_GanjDareh_N Russia_Steppe_Eneolithic -0.955
  234. gendstat: PPN Russia_Steppe_Eneolithic -0.561
  235.  
  236. removing /tmp/fsx.7336
  237. ##end of qpAdm: 2.334 seconds cpu 0.791 Mbytes in use
  238.  
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