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misnomer001

Steppe_emba = ehg + chg + tarim + iran + turkey_n

misnomer001
Aug 20th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: fstatsa5.txt
  5. popleft: left
  6. popright: right
  7. details: YES
  8. allsnps: YES
  9. inbreed: NO
  10. oldallsnps: NO
  11. ## qpAdm version: 1520
  12. seed: 2116301031
  13. inbreed set NO
  14. inbreed set NO
  15.  
  16. left pops:
  17. Steppe_EMBA
  18. EHG
  19. CHG_Kotias
  20. Tarim_EMBA1
  21. Iran_GanjDareh_N
  22. Turkey_N
  23.  
  24. right pops:
  25. Mbuti.DG
  26. ONG.SG
  27. CHG_Satsurblia
  28. Serbia_IronGates_Mesolithic
  29. Russia_Khvalynsk_Eneolithic
  30. Russia_Shamanka_Eneolithic.SG
  31. PPN
  32. WSHG
  33.  
  34. codimension 1
  35. f4info:
  36. f4rank: 4 dof: 3 chisq: 5.710 tail: 0.126586626 dofdiff: 5 chisqdiff: -5.710 taildiff: 1
  37. B:
  38. scale 1.000 1.000 1.000 1.000
  39. ONG.SG 0.460 -0.243 -0.444 0.639
  40. CHG_Satsurblia -0.224 -1.173 1.960 0.119
  41. Serbia_IronGates_Mesolithic 0.730 1.551 1.268 -1.024
  42. Russia_Khvalynsk_Eneolithic 1.319 0.397 0.496 -1.070
  43. Russia_Shamanka_Eneolithic.SG 0.845 -0.399 -0.690 1.020
  44. PPN -0.274 1.647 0.073 1.818
  45. WSHG 1.917 -0.358 -0.792 0.191
  46. A:
  47. scale 164.591 492.629 540.147 945.439
  48. EHG 0.300 1.013 0.385 -1.116
  49. CHG_Kotias -1.057 -1.049 1.912 1.371
  50. Tarim_EMBA1 0.440 -0.504 -0.849 0.361
  51. Iran_GanjDareh_N -1.428 -0.376 -0.662 -0.749
  52. Turkey_N -1.250 1.574 0.189 1.089
  53.  
  54.  
  55. full rank
  56. f4info:
  57. f4rank: 5 dof: 0 chisq: 0.000 tail: 1 dofdiff: 3 chisqdiff: 5.710 taildiff: 0.126586626
  58. B:
  59. scale 306.958 119.890 288.524 114.594 117.040
  60. ONG.SG -0.210 -0.375 0.711 -0.444 -0.433
  61. CHG_Satsurblia -0.510 1.312 -0.727 0.008 -0.157
  62. Serbia_IronGates_Mesolithic 2.037 -0.619 -0.580 -0.968 -0.170
  63. Russia_Khvalynsk_Eneolithic 1.484 -1.116 0.532 -1.348 -1.166
  64. Russia_Shamanka_Eneolithic.SG -0.224 -0.644 1.281 -0.799 -0.776
  65. PPN 0.241 0.114 -0.549 -0.070 1.090
  66. WSHG 0.488 -1.756 1.845 -1.845 -1.899
  67. A:
  68. scale 2.236 2.236 2.236 2.236 2.236
  69. EHG 2.236 0.000 0.000 0.000 0.000
  70. CHG_Kotias 0.000 2.236 0.000 0.000 0.000
  71. Tarim_EMBA1 0.000 0.000 2.236 0.000 0.000
  72. Iran_GanjDareh_N 0.000 0.000 0.000 2.236 0.000
  73. Turkey_N 0.000 0.000 0.000 0.000 2.236
  74.  
  75.  
  76. best coefficients: 0.321 0.144 0.435 0.057 0.043
  77. totmean: 0.321 0.144 0.435 0.057 0.043
  78. boot mean: 0.321 0.145 0.435 0.057 0.043
  79. std. errors: 0.024 0.032 0.025 0.054 0.029
  80.  
  81. error covariance (* 1,000,000)
  82. 591 -324 -529 744 -483
  83. -324 1035 372 -1447 363
  84. -529 372 631 -961 487
  85. 744 -1447 -961 2881 -1217
  86. -483 363 487 -1217 849
  87.  
  88.  
  89. summ: Steppe_EMBA 5 0.126587 0.321 0.145 0.435 0.057 0.043 591 -324 -529 744 -483 ...
  90. 1035 372 -1447 363 631 ...
  91. -961 487 2881 -1217 849
  92.  
  93. fixed pat wt dof chisq tail prob
  94. 00000 0 3 5.710 0.126587 0.321 0.144 0.435 0.057 0.043
  95. 00001 1 4 8.277 0.0819589 0.345 0.130 0.414 0.111 0.000
  96. 00010 1 4 6.158 0.187674 0.309 0.176 0.453 0.000 0.062
  97. 00100 1 4 185.547 0 0.696 -0.494 0.000 1.218 -0.420 infeasible
  98. 01000 1 4 27.530 1.55289e-05 0.371 0.000 0.382 0.255 -0.008 infeasible
  99. 10000 1 4 123.395 1.00551e-25 0.000 0.555 0.766 -0.694 0.373 infeasible
  100. 00011 2 5 17.333 0.00390913 0.339 0.224 0.437 0.000 0.000
  101. 00101 2 5 276.661 0 0.702 -2.580 0.000 2.878 0.000 infeasible
  102. 00110 2 5 405.496 0 0.744 0.423 0.000 0.000 -0.167 infeasible
  103. 01001 2 5 27.348 4.87944e-05 0.364 0.000 0.389 0.247 0.000
  104. 01010 2 5 96.510 2.87182e-19 0.272 0.000 0.526 0.000 0.202
  105. 01100 2 5 211.705 0 0.713 0.000 0.000 0.638 -0.351 infeasible
  106. 10001 2 5 231.622 0 0.000 1.327 0.728 -1.055 0.000 infeasible
  107. 10010 2 5 231.836 0 0.000 0.137 0.685 0.000 0.178
  108. 10100 2 5 305.150 0 0.000 -24.459 0.000 26.189 -0.730 infeasible
  109. 11000 2 5 269.838 0 0.000 0.000 0.723 -0.015 0.292 infeasible
  110. 00111 3 6 431.538 0 0.720 0.280 0.000 0.000 0.000
  111. 01011 3 6 339.434 0 0.463 0.000 0.537 0.000 0.000
  112. 01101 3 6 363.096 0 0.676 0.000 0.000 0.324 0.000
  113. 01110 3 6 660.186 0 0.829 0.000 0.000 0.000 0.171
  114. 10011 3 6 309.855 0 0.000 0.323 0.677 0.000 0.000
  115. 10101 3 6 304.701 0 0.000 -29.548 0.000 30.548 0.000 infeasible
  116. 10110 3 6 830.708 0 0.000 2.639 0.000 0.000 -1.639 infeasible
  117. 11001 3 6 401.658 0 0.000 0.000 0.682 0.318 0.000
  118. 11010 3 6 269.199 0 0.000 0.000 0.719 0.000 0.281
  119. 11100 3 6 1191.994 0 0.000 0.000 0.000 2.304 -1.304 infeasible
  120. 01111 4 7 759.494 0 1.000 0.000 0.000 0.000 0.000
  121. 10111 4 7 1493.323 0 0.000 1.000 0.000 0.000 0.000
  122. 11011 4 7 821.809 0 0.000 0.000 1.000 0.000 0.000
  123. 11101 4 7 1863.584 0 0.000 0.000 0.000 1.000 0.000
  124. 11110 4 7 3699.567 0 0.000 0.000 0.000 0.000 1.000
  125. best pat: 00000 0.126587 - -
  126. best pat: 00010 0.187674 chi(nested): 0.447 p-value for nested model: 0.503562
  127. best pat: 01001 4.87944e-05 not nested
  128. best pat: 11010 3.21854e-55 not nested
  129. best pat: 01111 1.01847e-159 not nested
  130.  
  131. coeffs: 0.321 0.144 0.435 0.057 0.043
  132.  
  133. ## dscore:: f_4(Base, Fit, Rbase, right2)
  134. ## genstat:: f_4(Base, Fit, right1, right2)
  135.  
  136. details: EHG ONG.SG -0.000685 -2.121914
  137. details: CHG_Kotias ONG.SG -0.003126 -6.808337
  138. details: Tarim_EMBA1 ONG.SG 0.002465 7.785390
  139. details: Iran_GanjDareh_N ONG.SG -0.003871 -10.797642
  140. details: Turkey_N ONG.SG -0.003701 -11.378331
  141. dscore: ONG.SG f4: 0.000022 Z: 0.088881
  142.  
  143. details: EHG CHG_Satsurblia -0.001663 -3.913349
  144. details: CHG_Kotias CHG_Satsurblia 0.010943 15.216256
  145. details: Tarim_EMBA1 CHG_Satsurblia -0.002518 -6.313928
  146. details: Iran_GanjDareh_N CHG_Satsurblia 0.000069 0.140751
  147. details: Turkey_N CHG_Satsurblia -0.001345 -2.976920
  148. dscore: CHG_Satsurblia f4: -0.000105 Z: -0.313240
  149.  
  150. details: EHG Serbia_IronGates_Mesolithic 0.006635 21.041269
  151. details: CHG_Kotias Serbia_IronGates_Mesolithic -0.005159 -11.493974
  152. details: Tarim_EMBA1 Serbia_IronGates_Mesolithic -0.002009 -6.615591
  153. details: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.008446 -25.561473
  154. details: Turkey_N Serbia_IronGates_Mesolithic -0.001453 -4.502590
  155. dscore: Serbia_IronGates_Mesolithic f4: -0.000036 Z: -0.149056
  156.  
  157. details: EHG Russia_Khvalynsk_Eneolithic 0.004833 11.444898
  158. details: CHG_Kotias Russia_Khvalynsk_Eneolithic -0.009308 -17.354261
  159. details: Tarim_EMBA1 Russia_Khvalynsk_Eneolithic 0.001843 4.537685
  160. details: Iran_GanjDareh_N Russia_Khvalynsk_Eneolithic -0.011762 -26.527699
  161. details: Turkey_N Russia_Khvalynsk_Eneolithic -0.009965 -24.211821
  162. dscore: Russia_Khvalynsk_Eneolithic f4: -0.000088 Z: -0.274206
  163.  
  164. details: EHG Russia_Shamanka_Eneolithic.SG -0.000730 -2.272947
  165. details: CHG_Kotias Russia_Shamanka_Eneolithic.SG -0.005371 -12.406025
  166. details: Tarim_EMBA1 Russia_Shamanka_Eneolithic.SG 0.004440 14.016240
  167. details: Iran_GanjDareh_N Russia_Shamanka_Eneolithic.SG -0.006976 -20.417765
  168. details: Turkey_N Russia_Shamanka_Eneolithic.SG -0.006631 -20.944671
  169. dscore: Russia_Shamanka_Eneolithic.SG f4: 0.000241 Z: 0.946893
  170.  
  171. details: EHG PPN 0.000786 2.185259
  172. details: CHG_Kotias PPN 0.000949 1.975863
  173. details: Tarim_EMBA1 PPN -0.001902 -5.510423
  174. details: Iran_GanjDareh_N PPN -0.000611 -1.633689
  175. details: Turkey_N PPN 0.009317 27.208760
  176. dscore: PPN f4: -0.000077 Z: -0.276818
  177.  
  178. details: EHG WSHG 0.001589 3.799445
  179. details: CHG_Kotias WSHG -0.014645 -27.324997
  180. details: Tarim_EMBA1 WSHG 0.006395 15.620963
  181. details: Iran_GanjDareh_N WSHG -0.016104 -37.587591
  182. details: Turkey_N WSHG -0.016227 -40.915415
  183. dscore: WSHG f4: -0.000434 Z: -1.311334
  184.  
  185. gendstat: Mbuti.DG ONG.SG 0.089
  186. gendstat: Mbuti.DG CHG_Satsurblia -0.313
  187. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -0.149
  188. gendstat: Mbuti.DG Russia_Khvalynsk_Eneolithic -0.274
  189. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG 0.947
  190. gendstat: Mbuti.DG PPN -0.277
  191. gendstat: Mbuti.DG WSHG -1.311
  192. gendstat: ONG.SG CHG_Satsurblia -0.364
  193. gendstat: ONG.SG Serbia_IronGates_Mesolithic -0.224
  194. gendstat: ONG.SG Russia_Khvalynsk_Eneolithic -0.334
  195. gendstat: ONG.SG Russia_Shamanka_Eneolithic.SG 0.983
  196. gendstat: ONG.SG PPN -0.327
  197. gendstat: ONG.SG WSHG -1.350
  198. gendstat: CHG_Satsurblia Serbia_IronGates_Mesolithic 0.211
  199. gendstat: CHG_Satsurblia Russia_Khvalynsk_Eneolithic 0.042
  200. gendstat: CHG_Satsurblia Russia_Shamanka_Eneolithic.SG 0.988
  201. gendstat: CHG_Satsurblia PPN 0.079
  202. gendstat: CHG_Satsurblia WSHG -0.828
  203. gendstat: Serbia_IronGates_Mesolithic Russia_Khvalynsk_Eneolithic -0.194
  204. gendstat: Serbia_IronGates_Mesolithic Russia_Shamanka_Eneolithic.SG 1.045
  205. gendstat: Serbia_IronGates_Mesolithic PPN -0.169
  206. gendstat: Serbia_IronGates_Mesolithic WSHG -1.297
  207. gendstat: Russia_Khvalynsk_Eneolithic Russia_Shamanka_Eneolithic.SG 1.015
  208. gendstat: Russia_Khvalynsk_Eneolithic PPN 0.033
  209. gendstat: Russia_Khvalynsk_Eneolithic WSHG -1.089
  210. gendstat: Russia_Shamanka_Eneolithic.SG PPN -1.067
  211. gendstat: Russia_Shamanka_Eneolithic.SG WSHG -2.124
  212. gendstat: PPN WSHG -0.980
  213.  
  214. ##end of qpAdm: 24.345 seconds cpu 1.053 Mbytes in use
  215.  
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