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- [root@localhost Jellyfish-master]# ./configure
- checking build system type... x86_64-unknown-linux-gnu
- checking host system type... x86_64-unknown-linux-gnu
- checking for a BSD-compatible install... /usr/bin/install -c
- checking whether build environment is sane... yes
- checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
- checking for gawk... gawk
- checking whether make sets $(MAKE)... yes
- checking whether make supports nested variables... yes
- checking whether make supports nested variables... (cached) yes
- checking how to print strings... printf
- checking for style of include used by make... GNU
- checking for gcc... gcc
- checking whether the C compiler works... yes
- checking for C compiler default output file name... a.out
- checking for suffix of executables...
- checking whether we are cross compiling... no
- checking for suffix of object files... o
- checking whether we are using the GNU C compiler... yes
- checking whether gcc accepts -g... yes
- checking for gcc option to accept ISO C89... none needed
- checking dependency style of gcc... gcc3
- checking for a sed that does not truncate output... /usr/bin/sed
- checking for grep that handles long lines and -e... /usr/bin/grep
- checking for egrep... /usr/bin/grep -E
- checking for fgrep... /usr/bin/grep -F
- checking for ld used by gcc... /usr/bin/ld
- checking if the linker (/usr/bin/ld) is GNU ld... yes
- checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
- checking the name lister (/usr/bin/nm -B) interface... BSD nm
- checking whether ln -s works... yes
- checking the maximum length of command line arguments... 1572864
- checking whether the shell understands some XSI constructs... yes
- checking whether the shell understands "+="... yes
- checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
- checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
- checking for /usr/bin/ld option to reload object files... -r
- checking for objdump... objdump
- checking how to recognize dependent libraries... pass_all
- checking for dlltool... no
- checking how to associate runtime and link libraries... printf %s\n
- checking for ar... ar
- checking for archiver @FILE support... @
- checking for strip... strip
- checking for ranlib... ranlib
- checking command to parse /usr/bin/nm -B output from gcc object... ok
- checking for sysroot... no
- checking for mt... no
- checking if : is a manifest tool... no
- checking how to run the C preprocessor... gcc -E
- checking for ANSI C header files... yes
- checking for sys/types.h... yes
- checking for sys/stat.h... yes
- checking for stdlib.h... yes
- checking for string.h... yes
- checking for memory.h... yes
- checking for strings.h... yes
- checking for inttypes.h... yes
- checking for stdint.h... yes
- checking for unistd.h... yes
- checking for dlfcn.h... yes
- checking for objdir... .libs
- checking if gcc supports -fno-rtti -fno-exceptions... no
- checking for gcc option to produce PIC... -fPIC -DPIC
- checking if gcc PIC flag -fPIC -DPIC works... yes
- checking if gcc static flag -static works... yes
- checking if gcc supports -c -o file.o... yes
- checking if gcc supports -c -o file.o... (cached) yes
- checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
- checking whether -lc should be explicitly linked in... no
- checking dynamic linker characteristics... GNU/Linux ld.so
- checking how to hardcode library paths into programs... immediate
- checking whether stripping libraries is possible... yes
- checking if libtool supports shared libraries... yes
- checking whether to build shared libraries... yes
- checking whether to build static libraries... yes
- checking for ld used by gcc... /usr/bin/ld -m elf_x86_64
- checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
- checking for shared library run path origin... done
- checking for pkg-config... /usr/bin/pkg-config
- checking pkg-config is at least version 0.9.0... yes
- checking for g++... g++
- checking whether we are using the GNU C++ compiler... yes
- checking whether g++ accepts -g... yes
- checking dependency style of g++... gcc3
- checking how to run the C++ preprocessor... g++ -E
- checking for ld used by g++... /usr/bin/ld -m elf_x86_64
- checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
- checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
- checking for g++ option to produce PIC... -fPIC -DPIC
- checking if g++ PIC flag -fPIC -DPIC works... yes
- checking if g++ static flag -static works... no
- checking if g++ supports -c -o file.o... yes
- checking if g++ supports -c -o file.o... (cached) yes
- checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
- checking dynamic linker characteristics... (cached) GNU/Linux ld.so
- checking how to hardcode library paths into programs... immediate
- checking for HTSLIB... no
- checking for samtools... /usr/local/bin/samtools
- checking for md5sum... md5sum
- checking for yaggo... /home/genomica/bin/yaggo
- checking for x86 cpuid output... unknown
- checking for x86-AVX xgetbv output... unknown
- checking for x86 cpuid 0x00000000 output... 16:756e6547:6c65746e:49656e69
- checking for x86 cpuid 0x80000000 output... 80000008:0:0:0
- checking for x86 cpuid 0x00000001 output... 50654:23200800:7ffefbff:bfebfbff
- checking for x86 cpuid 0x00000007 output... 0:d39ffffb:18:9c000000
- checking for x86 cpuid 0x80000001 output... 0:0:121:2c100800
- checking for x86-AVX xgetbv 0x00000000 output... 2ff:0
- checking whether RDRND is supported by the processor... yes
- checking whether RDRND is supported by the processor and OS... yes
- checking whether C++ compiler accepts -mrdrnd... yes
- checking whether BMI1 is supported by the processor... yes
- checking whether BMI1 is supported by the processor and OS... yes
- checking whether C++ compiler accepts -mbmi... yes
- checking whether BMI2 is supported by the processor... yes
- checking whether BMI2 is supported by the processor and OS... yes
- checking whether C++ compiler accepts -mbmi2... yes
- checking whether ADX is supported by the processor... yes
- checking whether ADX is supported by the processor and OS... yes
- checking whether C++ compiler accepts -madx... yes
- checking whether MPX is supported by the processor... yes
- checking whether MPX is supported by the processor and OS... yes
- checking whether C++ compiler accepts -mmpx... no
- configure: WARNING: Your processor and OS supports MPX instructions but not your compiler, can you try another compiler?
- checking whether PREFETCHWT1 is supported by the processor... no
- checking whether ABM is supported by the processor... yes
- checking whether ABM is supported by the processor and OS... yes
- checking whether C++ compiler accepts -mabm... yes
- checking whether MMX is supported by the processor... yes
- checking whether MMX is supported by the processor and OS... yes
- checking whether C++ compiler accepts -mmmx... yes
- checking whether SSE is supported by the processor... yes
- checking whether SSE is supported by the processor and OS... yes
- checking whether C++ compiler accepts -msse... yes
- checking whether SSE2 is supported by the processor... yes
- checking whether SSE2 is supported by the processor and OS... yes
- checking whether C++ compiler accepts -msse2... yes
- checking whether SSE3 is supported by the processor... yes
- checking whether SSE3 is supported by the processor and OS... yes
- checking whether C++ compiler accepts -msse3... yes
- checking whether SSSE3 is supported by the processor... yes
- checking whether SSSE3 is supported by the processor and OS... yes
- checking whether C++ compiler accepts -mssse3... yes
- checking whether SSE4.1 is supported by the processor... yes
- checking whether SSE4.1 is supported by the processor and OS... yes
- checking whether C++ compiler accepts -msse4.1... yes
- checking whether SSE4.2 is supported by the processor... yes
- checking whether SSE4.2 is supported by the processor and OS... yes
- checking whether C++ compiler accepts -msse4.2... yes
- checking whether SSE4a is supported by the processor... no
- checking whether SHA is supported by the processor... no
- checking whether AES is supported by the processor... yes
- checking whether AES is supported by the processor and OS... yes
- checking whether C++ compiler accepts -maes... yes
- checking whether AVX is supported by the processor... yes
- checking whether AVX is supported by the processor and OS... yes
- checking whether C++ compiler accepts -mavx... yes
- checking whether FMA3 is supported by the processor... yes
- checking whether FMA3 is supported by the processor and OS... yes
- checking whether C++ compiler accepts -mfma... yes
- checking whether FMA4 is supported by the processor... no
- checking whether XOP is supported by the processor... no
- checking whether AVX2 is supported by the processor... yes
- checking whether AVX2 is supported by the processor and OS... yes
- checking whether C++ compiler accepts -mavx2... yes
- checking whether AVX512-F is supported by the processor... yes
- checking whether AVX512-F is supported by the processor and OS... yes
- checking whether C++ compiler accepts -mavx512f... no
- configure: WARNING: Your processor and OS supports AVX512-F instructions but not your compiler, can you try another compiler?
- checking whether AVX512-CD is supported by the processor... yes
- checking whether AVX512-CD is supported by the processor and OS... yes
- checking whether C++ compiler accepts -mavx512cd... no
- configure: WARNING: Your processor and OS supports AVX512-CD instructions but not your compiler, can you try another compiler?
- checking whether AVX512-PF is supported by the processor... no
- checking whether AVX512-ER is supported by the processor... no
- checking whether AVX512-VL is supported by the processor... yes
- checking whether AVX512-VL is supported by the processor and OS... yes
- checking whether C++ compiler accepts -mavx512vl... no
- configure: WARNING: Your processor and OS supports AVX512-VL instructions but not your compiler, can you try another compiler?
- checking whether AVX512-BW is supported by the processor... yes
- checking whether AVX512-BW is supported by the processor and OS... yes
- checking whether C++ compiler accepts -mavx512bw... no
- configure: WARNING: Your processor and OS supports AVX512-BW instructions but not your compiler, can you try another compiler?
- checking whether AVX512-DQ is supported by the processor... yes
- checking whether AVX512-DQ is supported by the processor and OS... yes
- checking whether C++ compiler accepts -mavx512dq... no
- configure: WARNING: Your processor and OS supports AVX512-DQ instructions but not your compiler, can you try another compiler?
- checking whether AVX512-IFMA is supported by the processor... no
- checking whether AVX512-VBMI is supported by the processor... no
- checking for __int128... yes
- checking for std::numeric_limits<__int128>... no
- checking for _NSGetExecutablePath... no
- checking for execinfo.h... yes
- checking for ext/stdio_filebuf.h... yes
- checking for sys/syscall.h... yes
- checking for siginfo_t.si_int... yes
- checking for posix_memalign... yes
- checking for aligned_alloc... yes
- checking that generated files are newer than configure... done
- configure: creating ./config.status
- config.status: creating Makefile
- config.status: creating tests/compat.sh
- config.status: creating jellyfish-2.0.pc
- config.status: creating config.h
- config.status: config.h is unchanged
- config.status: executing depfiles commands
- config.status: executing libtool commands
- [root@localhost Jellyfish-master]#
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