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misnomer001

steppe_en wangright geoksyur

misnomer001
Apr 26th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1882490384
  4. read 1073741824 bytes
  5. read 2146675633 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Russia_Steppe_Eneolithic
  11. EEHG
  12. CHG
  13. Geoksyur_EN
  14.  
  15. right pops:
  16. Mbuti.DG
  17. Russia_Ust_Ishim.DG
  18. Russia_Kostenki14.SG
  19. Russia_MA1_HG.SG
  20. Han.DG
  21. ONG.SG
  22. Papuan.DG
  23. Italy_North_Villabruna_HG
  24. Czech_Vestonice16
  25. Iberia_ElMiron
  26. Ethiopia_4500BP_published.SG
  27. Karitiana.DG
  28. Israel_Natufian
  29. Iran_GanjDareh_N
  30.  
  31. 0 Russia_Steppe_Eneolithic 3
  32. 1 EEHG 5
  33. 2 CHG 2
  34. 3 Geoksyur_EN 21
  35. 4 Mbuti.DG 4
  36. 5 Russia_Ust_Ishim.DG 1
  37. 6 Russia_Kostenki14.SG 1
  38. 7 Russia_MA1_HG.SG 1
  39. 8 Han.DG 3
  40. 9 ONG.SG 6
  41. 10 Papuan.DG 15
  42. 11 Italy_North_Villabruna_HG 1
  43. 12 Czech_Vestonice16 1
  44. 13 Iberia_ElMiron 1
  45. 14 Ethiopia_4500BP_published.SG 1
  46. 15 Karitiana.DG 3
  47. 16 Israel_Natufian 6
  48. 17 Iran_GanjDareh_N 8
  49. jackknife block size: 0.050
  50. snps: 1150502 indivs: 83
  51. number of blocks for block jackknife: 713
  52. ## ncols: 1150502
  53. coverage: Russia_Steppe_Eneolithic 1008226
  54. coverage: EEHG 1052093
  55. coverage: CHG 1149558
  56. coverage: Geoksyur_EN 1020133
  57. coverage: Mbuti.DG 1121438
  58. coverage: Russia_Ust_Ishim.DG 1062044
  59. coverage: Russia_Kostenki14.SG 1048972
  60. coverage: Russia_MA1_HG.SG 805960
  61. coverage: Han.DG 1121416
  62. coverage: ONG.SG 1143397
  63. coverage: Papuan.DG 1121459
  64. coverage: Italy_North_Villabruna_HG 883779
  65. coverage: Czech_Vestonice16 732091
  66. coverage: Iberia_ElMiron 626974
  67. coverage: Ethiopia_4500BP_published.SG 1149598
  68. coverage: Karitiana.DG 1121394
  69. coverage: Israel_Natufian 535079
  70. coverage: Iran_GanjDareh_N 1057358
  71. dof (jackknife): 618.073
  72. numsnps used: 1150502
  73. codimension 1
  74. f4info:
  75. f4rank: 2 dof: 11 chisq: 16.904 tail: 0.110736955 dofdiff: 13 chisqdiff: -16.904 taildiff: 1
  76. B:
  77. scale 1.000 1.000
  78. Russia_Ust_Ishim.DG 0.351 -0.564
  79. Russia_Kostenki14.SG 0.872 -0.817
  80. Russia_MA1_HG.SG 1.730 0.150
  81. Han.DG 0.561 0.247
  82. ONG.SG 0.434 -0.203
  83. Papuan.DG 0.441 0.178
  84. Italy_North_Villabruna_HG 1.782 -1.075
  85. Czech_Vestonice16 0.902 -0.002
  86. Iberia_ElMiron 1.080 -0.355
  87. Ethiopia_4500BP_published.SG -0.001 -0.051
  88. Karitiana.DG 1.559 0.027
  89. Israel_Natufian 0.052 0.698
  90. Iran_GanjDareh_N -0.916 3.176
  91. A:
  92. scale 421.529 2621.888
  93. EEHG 0.979 -0.356
  94. CHG -1.103 -1.581
  95. Geoksyur_EN -0.909 0.612
  96.  
  97.  
  98. full rank
  99. f4info:
  100. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 16.904 taildiff: 0.110736955
  101. B:
  102. scale 444.669 384.108 409.596
  103. Russia_Ust_Ishim.DG 0.118 -0.393 -0.550
  104. Russia_Kostenki14.SG 0.703 -0.820 -1.034
  105. Russia_MA1_HG.SG 1.541 -1.945 -1.693
  106. Han.DG 0.575 -0.682 -0.516
  107. ONG.SG 0.398 -0.477 -0.489
  108. Papuan.DG 0.270 -0.618 -0.510
  109. Italy_North_Villabruna_HG 1.779 -1.629 -1.789
  110. Czech_Vestonice16 0.956 -0.930 -0.813
  111. Iberia_ElMiron 1.000 -1.096 -1.088
  112. Ethiopia_4500BP_published.SG -0.150 -0.070 -0.125
  113. Karitiana.DG 1.683 -1.582 -1.380
  114. Israel_Natufian -0.103 -0.278 -0.067
  115. Iran_GanjDareh_N -1.269 0.088 1.013
  116. A:
  117. scale 1.732 1.732 1.732
  118. EEHG 1.732 0.000 0.000
  119. CHG 0.000 1.732 0.000
  120. Geoksyur_EN 0.000 0.000 1.732
  121.  
  122.  
  123. best coefficients: 0.488 0.064 0.448
  124. Jackknife mean: 0.487893870 0.067828008 0.444278122
  125. std. errors: 0.021 0.121 0.110
  126.  
  127. error covariance (* 1,000,000)
  128. 421 -1575 1155
  129. -1575 14743 -13168
  130. 1155 -13168 12013
  131.  
  132.  
  133. summ: Russia_Steppe_Eneolithic 3 0.110737 0.488 0.068 0.444 421 -1575 1155 14743 -13168 ...
  134. 12013
  135.  
  136. fixed pat wt dof chisq tail prob
  137. 000 0 11 16.904 0.110737 0.488 0.064 0.448
  138. 001 1 12 37.231 0.000204911 0.445 0.555 0.000
  139. 010 1 12 17.179 0.142991 0.495 0.000 0.505
  140. 100 1 12 85.180 4.20361e-13 0.000 4.486 -3.486 infeasible
  141. 011 2 13 639.762 0 1.000 0.000 0.000
  142. 101 2 13 316.570 0 0.000 1.000 0.000
  143. 110 2 13 770.018 0 0.000 0.000 1.000
  144. best pat: 000 0.110737 - -
  145. best pat: 010 0.142991 chi(nested): 0.275 p-value for nested model: 0.600299
  146. best pat: 101 8.13965e-60 not nested
  147.  
  148. coeffs: 0.488 0.064 0.448
  149.  
  150. ## dscore:: f_4(Base, Fit, Rbase, right2)
  151. ## genstat:: f_4(Base, Fit, right1, right2)
  152.  
  153. details: EEHG Russia_Ust_Ishim.DG 0.000266 0.792125
  154. details: CHG Russia_Ust_Ishim.DG -0.001023 -2.796295
  155. details: Geoksyur_EN Russia_Ust_Ishim.DG -0.001343 -4.924253
  156. dscore: Russia_Ust_Ishim.DG f4: -0.000538 Z: -2.134461
  157.  
  158. details: EEHG Russia_Kostenki14.SG 0.001580 4.460242
  159. details: CHG Russia_Kostenki14.SG -0.002135 -5.294348
  160. details: Geoksyur_EN Russia_Kostenki14.SG -0.002524 -8.475235
  161. dscore: Russia_Kostenki14.SG f4: -0.000496 Z: -1.844312
  162.  
  163. details: EEHG Russia_MA1_HG.SG 0.003465 10.077070
  164. details: CHG Russia_MA1_HG.SG -0.005064 -12.803480
  165. details: Geoksyur_EN Russia_MA1_HG.SG -0.004134 -13.824242
  166. dscore: Russia_MA1_HG.SG f4: -0.000484 Z: -1.799126
  167.  
  168. details: EEHG Han.DG 0.001294 4.577865
  169. details: CHG Han.DG -0.001775 -5.342905
  170. details: Geoksyur_EN Han.DG -0.001259 -4.989619
  171. dscore: Han.DG f4: -0.000046 Z: -0.202803
  172.  
  173. details: EEHG ONG.SG 0.000894 3.111806
  174. details: CHG ONG.SG -0.001243 -3.848937
  175. details: Geoksyur_EN ONG.SG -0.001193 -4.837113
  176. dscore: ONG.SG f4: -0.000178 Z: -0.793992
  177.  
  178. details: EEHG Papuan.DG 0.000606 2.154340
  179. details: CHG Papuan.DG -0.001609 -4.970575
  180. details: Geoksyur_EN Papuan.DG -0.001246 -5.188795
  181. dscore: Papuan.DG f4: -0.000365 Z: -1.694816
  182.  
  183. details: EEHG Italy_North_Villabruna_HG 0.004001 10.689979
  184. details: CHG Italy_North_Villabruna_HG -0.004242 -10.337745
  185. details: Geoksyur_EN Italy_North_Villabruna_HG -0.004367 -13.930164
  186. dscore: Italy_North_Villabruna_HG f4: -0.000275 Z: -0.953562
  187.  
  188. details: EEHG Czech_Vestonice16 0.002150 6.599862
  189. details: CHG Czech_Vestonice16 -0.002421 -6.616951
  190. details: Geoksyur_EN Czech_Vestonice16 -0.001986 -7.168498
  191. dscore: Czech_Vestonice16 f4: 0.000005 Z: 0.020383
  192.  
  193. details: EEHG Iberia_ElMiron 0.002249 7.663241
  194. details: CHG Iberia_ElMiron -0.002853 -8.438244
  195. details: Geoksyur_EN Iberia_ElMiron -0.002656 -10.062047
  196. dscore: Iberia_ElMiron f4: -0.000275 Z: -1.195838
  197.  
  198. details: EEHG Ethiopia_4500BP_published.SG -0.000336 -1.413693
  199. details: CHG Ethiopia_4500BP_published.SG -0.000182 -0.667514
  200. details: Geoksyur_EN Ethiopia_4500BP_published.SG -0.000306 -1.532478
  201. dscore: Ethiopia_4500BP_published.SG f4: -0.000313 Z: -1.683412
  202.  
  203. details: EEHG Karitiana.DG 0.003785 11.665086
  204. details: CHG Karitiana.DG -0.004120 -10.741365
  205. details: Geoksyur_EN Karitiana.DG -0.003370 -11.646866
  206. dscore: Karitiana.DG f4: 0.000075 Z: 0.292235
  207.  
  208. details: EEHG Israel_Natufian -0.000231 -0.964495
  209. details: CHG Israel_Natufian -0.000724 -2.833533
  210. details: Geoksyur_EN Israel_Natufian -0.000164 -0.775488
  211. dscore: Israel_Natufian f4: -0.000232 Z: -1.232940
  212.  
  213. details: EEHG Iran_GanjDareh_N -0.002855 -10.378713
  214. details: CHG Iran_GanjDareh_N 0.000228 0.723572
  215. details: Geoksyur_EN Iran_GanjDareh_N 0.002473 10.296595
  216. dscore: Iran_GanjDareh_N f4: -0.000270 Z: -1.253464
  217.  
  218. gendstat: Mbuti.DG Russia_Ust_Ishim.DG -2.134
  219. gendstat: Mbuti.DG Russia_Kostenki14.SG -1.844
  220. gendstat: Mbuti.DG Russia_MA1_HG.SG -1.799
  221. gendstat: Mbuti.DG Han.DG -0.203
  222. gendstat: Mbuti.DG ONG.SG -0.794
  223. gendstat: Mbuti.DG Papuan.DG -1.695
  224. gendstat: Mbuti.DG Italy_North_Villabruna_HG -0.954
  225. gendstat: Mbuti.DG Czech_Vestonice16 0.020
  226. gendstat: Mbuti.DG Iberia_ElMiron -1.196
  227. gendstat: Mbuti.DG Ethiopia_4500BP_published.SG -1.683
  228. gendstat: Mbuti.DG Karitiana.DG 0.292
  229. gendstat: Mbuti.DG Israel_Natufian -1.233
  230. gendstat: Mbuti.DG Iran_GanjDareh_N -1.253
  231. gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 0.132
  232. gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG 0.165
  233. gendstat: Russia_Ust_Ishim.DG Han.DG 1.884
  234. gendstat: Russia_Ust_Ishim.DG ONG.SG 1.342
  235. gendstat: Russia_Ust_Ishim.DG Papuan.DG 0.658
  236. gendstat: Russia_Ust_Ishim.DG Italy_North_Villabruna_HG 0.774
  237. gendstat: Russia_Ust_Ishim.DG Czech_Vestonice16 1.764
  238. gendstat: Russia_Ust_Ishim.DG Iberia_ElMiron 0.883
  239. gendstat: Russia_Ust_Ishim.DG Ethiopia_4500BP_published.SG 0.789
  240. gendstat: Russia_Ust_Ishim.DG Karitiana.DG 2.013
  241. gendstat: Russia_Ust_Ishim.DG Israel_Natufian 1.085
  242. gendstat: Russia_Ust_Ishim.DG Iran_GanjDareh_N 0.983
  243. gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG 0.038
  244. gendstat: Russia_Kostenki14.SG Han.DG 1.660
  245. gendstat: Russia_Kostenki14.SG ONG.SG 1.140
  246. gendstat: Russia_Kostenki14.SG Papuan.DG 0.472
  247. gendstat: Russia_Kostenki14.SG Italy_North_Villabruna_HG 0.674
  248. gendstat: Russia_Kostenki14.SG Czech_Vestonice16 1.610
  249. gendstat: Russia_Kostenki14.SG Iberia_ElMiron 0.763
  250. gendstat: Russia_Kostenki14.SG Ethiopia_4500BP_published.SG 0.623
  251. gendstat: Russia_Kostenki14.SG Karitiana.DG 1.893
  252. gendstat: Russia_Kostenki14.SG Israel_Natufian 0.942
  253. gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N 0.815
  254. gendstat: Russia_MA1_HG.SG Han.DG 1.500
  255. gendstat: Russia_MA1_HG.SG ONG.SG 1.068
  256. gendstat: Russia_MA1_HG.SG Papuan.DG 0.413
  257. gendstat: Russia_MA1_HG.SG Italy_North_Villabruna_HG 0.619
  258. gendstat: Russia_MA1_HG.SG Czech_Vestonice16 1.550
  259. gendstat: Russia_MA1_HG.SG Iberia_ElMiron 0.672
  260. gendstat: Russia_MA1_HG.SG Ethiopia_4500BP_published.SG 0.564
  261. gendstat: Russia_MA1_HG.SG Karitiana.DG 1.948
  262. gendstat: Russia_MA1_HG.SG Israel_Natufian 0.827
  263. gendstat: Russia_MA1_HG.SG Iran_GanjDareh_N 0.744
  264. gendstat: Han.DG ONG.SG -0.662
  265. gendstat: Han.DG Papuan.DG -1.505
  266. gendstat: Han.DG Italy_North_Villabruna_HG -0.743
  267. gendstat: Han.DG Czech_Vestonice16 0.182
  268. gendstat: Han.DG Iberia_ElMiron -0.826
  269. gendstat: Han.DG Ethiopia_4500BP_published.SG -1.067
  270. gendstat: Han.DG Karitiana.DG 0.543
  271. gendstat: Han.DG Israel_Natufian -0.745
  272. gendstat: Han.DG Iran_GanjDareh_N -1.042
  273. gendstat: ONG.SG Papuan.DG -0.884
  274. gendstat: ONG.SG Italy_North_Villabruna_HG -0.320
  275. gendstat: ONG.SG Czech_Vestonice16 0.652
  276. gendstat: ONG.SG Iberia_ElMiron -0.359
  277. gendstat: ONG.SG Ethiopia_4500BP_published.SG -0.562
  278. gendstat: ONG.SG Karitiana.DG 0.983
  279. gendstat: ONG.SG Israel_Natufian -0.217
  280. gendstat: ONG.SG Iran_GanjDareh_N -0.406
  281. gendstat: Papuan.DG Italy_North_Villabruna_HG 0.290
  282. gendstat: Papuan.DG Czech_Vestonice16 1.335
  283. gendstat: Papuan.DG Iberia_ElMiron 0.333
  284. gendstat: Papuan.DG Ethiopia_4500BP_published.SG 0.209
  285. gendstat: Papuan.DG Karitiana.DG 1.791
  286. gendstat: Papuan.DG Israel_Natufian 0.536
  287. gendstat: Papuan.DG Iran_GanjDareh_N 0.418
  288. gendstat: Italy_North_Villabruna_HG Czech_Vestonice16 0.874
  289. gendstat: Italy_North_Villabruna_HG Iberia_ElMiron 0.000
  290. gendstat: Italy_North_Villabruna_HG Ethiopia_4500BP_published.SG -0.120
  291. gendstat: Italy_North_Villabruna_HG Karitiana.DG 1.057
  292. gendstat: Italy_North_Villabruna_HG Israel_Natufian 0.144
  293. gendstat: Italy_North_Villabruna_HG Iran_GanjDareh_N 0.015
  294. gendstat: Czech_Vestonice16 Iberia_ElMiron -0.970
  295. gendstat: Czech_Vestonice16 Ethiopia_4500BP_published.SG -1.106
  296. gendstat: Czech_Vestonice16 Karitiana.DG 0.222
  297. gendstat: Czech_Vestonice16 Israel_Natufian -0.866
  298. gendstat: Czech_Vestonice16 Iran_GanjDareh_N -0.978
  299. gendstat: Iberia_ElMiron Ethiopia_4500BP_published.SG -0.141
  300. gendstat: Iberia_ElMiron Karitiana.DG 1.170
  301. gendstat: Iberia_ElMiron Israel_Natufian 0.168
  302. gendstat: Iberia_ElMiron Iran_GanjDareh_N 0.017
  303. gendstat: Ethiopia_4500BP_published.SG Karitiana.DG 1.391
  304. gendstat: Ethiopia_4500BP_published.SG Israel_Natufian 0.334
  305. gendstat: Ethiopia_4500BP_published.SG Iran_GanjDareh_N 0.174
  306. gendstat: Karitiana.DG Israel_Natufian -1.087
  307. gendstat: Karitiana.DG Iran_GanjDareh_N -1.328
  308. gendstat: Israel_Natufian Iran_GanjDareh_N -0.163
  309.  
  310. ##end of qpAdm: 376.965 seconds cpu 1442.046 Mbytes in use
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