Picture of the puzzle:
http://i.imgur.com/Vju5E2X.png

Picture of the sand as well, it might help:
http://i.imgur.com/O2lwiuc.png



Goes through the script and always outputs:
ali found
300406005072000380058000160800902007000040000900508006087000690034000750100307002
We have encountered an error solving this puzzle.
Starting a new puzzle... (This used to break our script.)

Which is on line 588.



















program RuneSudoku;
//uses SysUtils;

{$DEFINE SMART8}
{$I SRL-OSR/SRL.Simba}

const
  Username = '';
  Password = '';
  buyMindRunes = true;
  buyDeathRunes = false;
  buyCosmicRunes = true;
  buyNatureRunes = true;
  buyChaosRunes = false;
  NumbOfPlayers = 1;
  ClickDelay = 5;  //Delay between the input of answers

var
  numbstring, posfind:string;
  ansArray : Array[1..81] of String;
  count, i, v, c, z, x, y, row, col, boxrow, boxcol, buy_runes:integer;

procedure DeclarePlayers;
var i, buy_runes:integer;
begin
  NumberOfPlayers(1);
  CurrentPlayer := 0;
  for i := 0 to NumbOfPlayers-1 do
  Players[i].BoxRewards  := ['mote', 'ostume', 'XP', 'Gem', 'ithril', 'oal', 'une', 'oins'];

  with Players[0] do
  begin
  Name := Username; // Username
  Pass := Password; // Password
  Active := True;
  Pin := '';      // Leave blank if you have no pin.
  buy_runes := 0
  end;
end;

Procedure Antiban;
Begin
  Case Random(100) Of
    10: HoverSkill('random', False);
    20: Begin PickUpMouse; SleepAndMoveMouse(3000 + Random(500)); End;
    30: IdleTime(100+random(700), 100+Random(100), 0.2+RandomE/2);
    40: Begin GameTab(Tab_Stats); Wait(3000 + Random(500)); GameTab(Tab_Inv); End;
    60: RandomMovement;
  End;
end;
procedure LogIn;
var a, b, c, d:integer;
Begin
  writeln('Attempting to log in...');
  if (FindColorTolerance(a, b, 6181970, 340, 220, 340, 220, 5)) then
    begin
      writeln('We have detected that we are on the log in page. Trying to log in now...');
      MMouse(455, 290, 5, 5);
      wait(100);
      ClickMouse2(mouse_left);
      wait(100 + Random(500));
      SendKeys(Username, 50+Random(51), 30+Random(30));
      wait(500 + Random(69)); //haha 69
      KeyDown(9); //Tab key down PressKey seems to hit the key twice sometimes so we're doing it this way even though it doesn't make sense...
      KeyUp(9); //Tab key up
      wait(1000 + Random(100));
      //MMouse(343, 276, 2, 2);
      //ClickMouse2(mouse_left);
      //wait(200 + Random(200));
      SendKeys(Password, 50+Random(51), 30+Random(30));
      wait(100);
      MMouse(304, 321, 5, 5);
      ClickMouse2(mouse_left);
      repeat
        wait(1000 + random(500));
      until FindColorTolerance(c, d, 584, 336, 316, 336, 316, 5);
      MMouse(398, 335, 5, 5);
      wait(200);
      ClickMouse2(mouse_left);
    end
    else
      begin
        writeln('We have detected that we are not on the login page...');
        writeln('If you are not already logged in please restart the script.');
      end;

end;
procedure CheckIfLoggedOut;
Var a, b:integer;
Begin
  if (FindColorTolerance(a, b, 6181970, 340, 220, 340, 220, 5)) then
    begin
      writeln('We were logged out somehow... Logging back in.');
      LogIn;
    end;
end;
procedure TalkToAli;
var
  counter, x, y:integer;
begin
  writeln('starting to find ali');
  if FindObjCustom(x, y, ['li', 'orri'], [13818072, 5723997, 16118771], 5) then
  begin
    writeln('ali found')
    ClickMouse2(mouse_left);
    Wait(100+random(500));
    counter := 0;
    repeat
      counter := counter + 1;
      ClickToContinue;
      Wait(100 + Random(100)); //Added this delay because it wasn't always registering correctly
    until (FindNPCChatText('unes', Nothing)) or (counter > 100);
    wait(400 + Random(200));
    FindNPCChatText('unes', clickleft);
    ClickToContinue;
    counter := 0;
    repeat
      counter := counter + 1;
      ClickToContinue;
      Wait(300 + Random(100));
    until (FindNPCChatText('arge', Nothing)) or (counter > 10);
    wait(100 + Random(200));
    FindNPCChatText('arge', clickleft);
    counter := 0;
    repeat
      counter := counter + 1;
      ClickToContinue;
      Wait(100 + Random(100));
    until (FindNPCChatText('xamine', Nothing)) or (counter > 10);
    wait(100 + Random(200));
    FindNPCChatText('xamine', clickleft);
  end;
end;

procedure writeAnsArray(inputString : string);
begin
  for i:=1 to 81 do
  begin
    if not (strtoint(copy(inputString,i,1)) = 0) then
    begin
      ansArray[i] := (copy(inputString,i,1));
    end else
    begin
      ansArray[i] := '123456789';
    end;
  end;
end;

function checkRows : boolean;
begin
  for i:=1 to 81 do
  begin
    if (length(ansArray[i]) = 1) then   //if the string length is 1, the answer is decided. need to remove the number from the row
    begin
      row := (((i-1)/9)+1);             //determines the row
      for v:=1 to 81 do
      begin
        if (row = (((v-1)/9)+1)) then   //checks if the row of boxes 1-81 matches the row of the string above ^
        begin
          if not (v = i) then           //if the box is not the same box as the correct string ^
          begin
            if not ((pos(ansArray[i], ansArray[v])) = 0) then     //if the string can be found in any of the strings on the same row
            begin
              //writeln(ansArray[i]+' is at box '+inttostr(i)+' and removed from box '+inttostr(v)+' because they are at the same row');
              delete(ansArray[v], (pos(ansArray[i], ansArray[v])), 1);          //finds and removes said string from the other string
              result := true;
            end;
          end;
        end;
      end;
    end;
  end;
end;

function checkCols: boolean;
begin
  for i:=1 to 81 do
  begin
    if (length(ansArray[i]) = 1) then   //if the string length is 1, the answer is decided. need to remove the number from the col
    begin
      col := (((i-1) mod 9)+1);         //determines the col
      for v:=1 to 81 do
      begin
        if (col = (((v-1) mod 9)+1)) then   //checks if the col of boxes 1-81 matches the col of the string above ^
        begin
          if not (v = i) then           //if the box is not the same box as the correct string ^
          begin
            if not ((pos(ansArray[i], ansArray[v])) = 0) then     //if the string can be found in any of the strings on the same col
            begin
              //writeln(ansArray[i]+' is at box '+inttostr(i)+' and removed from box '+inttostr(v)+' because they are at the same col');
              delete(ansArray[v], (pos(ansArray[i], ansArray[v])), 1);          //finds and removes said string from the other string
              result := true;
            end;
          end;
        end;
      end;
    end;
  end;
end;

function checkTbTbox : boolean;
begin
  for i:=1 to 81 do
  begin
    if (length(ansArray[i]) = 1) then   //if the string length is 1, the answer is decided. need to remove the number from the 3x3 box
    begin
      boxrow := ((((i-1)/9)/3)+1);      //determines the boxrow
      boxcol := ((((i-1) mod 9)/3)+1);  //determines the boxcol
      for v:=1 to 81 do
      begin
        if ((boxrow = ((((v-1)/9)/3)+1)) and (boxcol = ((((v-1) mod 9)/3)+1))) then //checks if the boxcol and boxrow match the boxcol and boxrow of the string above ^
        begin
          if not (v = i) then         //if the box is not the same box as the correct string ^
          begin
            if not ((pos(ansArray[i], ansArray[v])) = 0 ) then       //if the string can be found in any of the string on the same boxcol and boxrow
            begin
              //writeln(ansArray[i]+' is at box '+inttostr(i)+' and removed from box '+inttostr(v)+' because they are at the same boxcol and boxrow');
              delete(ansArray[v], (pos(ansArray[i], ansArray[v])), 1);          //finds and removes said string from the other string
              result := true;
            end;
          end;
        end;
      end;
    end;
  end;
end;

function solvesquares : boolean;
begin
  if (checkRows or checkCols or checkTbTbox) then
  begin
    result := true;
  end;
end;

function singlesRows : boolean;
begin
  for row:=1 to 9 do                      //for rows 1 - 9
  begin
    for c:=1 to 9 do                    //for numbers 1 - 9
    begin
      z := 0;
      posfind := '';
      for v:=1 to 81 do                 //for boxes 1 - 81
      begin
        if (row = (((v-1)/9)+1)) then     //checks if the row of boxes 1-81 matches the row above ^
        begin
          if not ((pos(inttostr(c), ansArray[v])) = 0) then         //if the number is found in the box
          begin
            z := z+1;                                               //count + 1
            posfind := posfind + inttostr(v);                       //string of box
          end;
        end;
      end;                                                          //if only 1 is found
      if ((z = 1) and not (length(ansArray[strtoint(posfind)]) = 1)) then
      begin
        ansArray[strtoint(posfind)] := inttostr(c);                 //replaces the string with the number
        result := true;
      end;
    end;
  end;
end;

function singlesCols : boolean;
begin
  for col:=1 to 9 do                        //for col 1 - 9
  begin
    for c:=1 to 9 do                      //for numbers 1 - 9
    begin
      z := 0;
      posfind := '';
      for v:=1 to 81 do                   //for boxes 1 - 81
      begin
        if (col = (((v-1) mod 9)+1)) then   //checks if the row of boxes 1-81 matches the row above ^
        begin
          if not ((pos(inttostr(c), ansArray[v])) = 0) then         //if the number is found in the box
          begin
            z := z+1;                                               //count + 1
            posfind := posfind + inttostr(v);                       //string of box
          end;
        end;
      end;                                                          //if only 1 is found
      if ((z = 1) and not (length(ansArray[strtoint(posfind)]) = 1)) then
      begin
        ansArray[strtoint(posfind)] := inttostr(c);                 //replaces the string with the number
        result := true;
      end;
    end;
  end;
end;

function singlesTbTbox : boolean;
begin
  for boxrow:=1 to 3 do                        //for col 1 - 9
  begin
    for boxcol:=1 to 3 do
    begin
      for c:=1 to 9 do                      //for numbers 1 - 9
      begin
        z := 0;
        posfind := '';
        for v:=1 to 81 do                   //for boxes 1 - 81
        begin
          if (boxrow = ((((v-1)/9)/3)+1)) and (boxcol = ((((v-1) mod 9)/3)+1)) then   //checks if the row of boxes 1-81 matches the row above ^
          begin
            if not ((pos(inttostr(c), ansArray[v])) = 0) then         //if the number is found in the box
            begin
              z := z+1;                                               //count + 1
              posfind := posfind + inttostr(v);                       //string of box
            end;
          end;
        end;                                                          //if only 1 is found
        if ((z = 1) and not (length(ansArray[strtoint(posfind)]) = 1)) then
        begin
          ansArray[strtoint(posfind)] := inttostr(c);                 //replaces the string with the number
          result := true;
        end;
      end;
    end;
  end;
end;

function solvesingles : boolean;
begin
  if (singlesRows or singlesCols or singlesTbTbox) then
  begin
    result := true;
  end;
end;

procedure outputPuzzle;
begin
  i := 1;
  for v:=1 to 9 do
  begin
    writeln('output puzz ['+ansArray[i]+']['+ansArray[i+1]+']['+ansArray[i+2]+']['+ansArray[i+3]+']['+ansArray[i+4]+']['+ansArray[i+5]+']['+ansArray[i+6]+']['+ansArray[i+7]+']['+ansArray[i+8]+']');
    i := i + 9;
  end;
end;

procedure findAnswer;
begin
  repeat
    repeat
    //it attempts to solve in the until
    until not (solvesquares);
  //it attempts to solve in the until
  until not (solvesingles);
end;

procedure writeNumbstring;
var
  x, y, mind1, mind11, fire2, fire22, air3, air33, water4, water44, earth5, earth55, body6, body66, death7, death77, chaos8, chaos88, law9, law99:integer;
begin //air and chaos detection needs to be fixed
  mind1 := 133906; // new
  fire2 := 1121418; //new
  air3 := DTMFromString('mFQEAAHic42VgYOhgZGDoAuJeIO6D4n6oWBsQNwFxAxQ3QsXsgPpMgdgCiK0ZIHxHIHYFYhcgdgJieyC2AWJLqLonDx6QjPmB+kjFjGRgFAAAz50tPg==');
  water4 := 9049105;  //new
  earth5 := 538965; //new
  body6 := 10951188;  //new
  death7 := DTMFromString('m1gAAAHic42JgYPAFYi8oHQjEwUAcAMRBUNoHiD2B+CwQnwHiU0B8EsoGiV0E4itQfB6IRQQFGfZu3oyCsYnxA9USgxmJxAgAAMESHUs=');
  chaos8 := 608072;  //fix
  law9 := 11934228;  //new
  mind11 := 1738719;   //new
  fire22 := 1319335;   //new
  air33 := DTMFromString('mFQEAAHic42VgYOhgZGDoAuJeIO6D4n6oWBsQNwFxAxQ3QsXsgPpMgdgCiK0ZIHxHIHYFYhcgdgJieyC2AWJLqLonDx6QjPmB+kjFjGRgFAAAz50tPg==');
  water44 := 10951188;  //new
  earth55 := 870508;     //new
  body66 := 13639447;   //new
  death77 := DTMFromString('mWAAAAHicY2FgYGgG4hYgbgfiViCOBeJIII4B4gQgFhEUZHjy4AGYBmF+oBgyZkTDIAAAnHoHEA==');
  chaos88 := 1613009;  //new
  law99 := 14623002;   //new
  c := 22;
  numbstring := '';
  for i:=1 to 9 do
  begin
    z := 133;
    for v:=1 to 9 do
    begin
      if (FindColorTolerance(x, y, mind1, z-15, c-15, z+15, c+15, 5) or FindColorTolerance(x, y, mind11, z-15, c-15, z+15, c+15, 5)) then
      begin
        numbstring := numbstring + '1';
      end else if (FindColorTolerance(x, y, fire2, z-15, c-15, z+15, c+15, 5) or FindColorTolerance(x, y, fire22, z-15, c-15, z+15, c+15, 5)) then
      begin
        numbstring := numbstring + '2';
      end else if (FindDTM(air3, x, y, z-15, c-15, z+15, c+15)) then
      begin
        numbstring := numbstring + '3';
      end else if (FindColorTolerance(x, y, water4, z-15, c-15, z+15, c+15, 5) or FindColorTolerance(x, y, water44, z-15, c-15, z+15, c+15, 5)) then
      begin
        numbstring := numbstring + '4';
      end else if (FindColorTolerance(x, y, earth5, z-15, c-15, z+15, c+15, 5) or FindColorTolerance(x, y, earth55, z-15, c-15, z+15, c+15, 5)) then
      begin
        numbstring := numbstring + '5';
      end else if (FindColorTolerance(x, y, body6, z-15, c-15, z+15, c+15, 5) or FindColorTolerance(x, y, body66, z-15, c-15, z+15, c+15, 5)) then
      begin
        numbstring := numbstring + '6';
      end else if (FindDTM(death7, x, y, z-15, c-15, z+15, c+15) or FindDTM(death77, x, y, z-15, c-15, z+15, c+15)) then
      begin
        numbstring := numbstring + '7';
      end else if (FindColorTolerance(x, y, chaos8, z-15, c-15, z+15, c+15, 5) or FindColorTolerance(x, y, chaos88, z-15, c-15, z+15, c+15, 5)) then
      begin
        numbstring := numbstring + '8';
      end else if (FindColorTolerance(x, y, law9, z-15, c-15, z+15, c+15, 5) or FindColorTolerance(x, y, law99, z-15, c-15, z+15, c+15, 5)) then
      begin
        numbstring := numbstring + '9';
      end else
      begin
        numbstring := numbstring + '0';
      end;
    z := z+37;
    end;
  c := c+37;
  end;
  FreeDTM(air3);
  FreeDTM(death7);
  FreeDTM(air33);
  FreeDTM(death77);
end;

procedure inputAnswer;
var
  x1, y1:integer;
begin
  x1 := 29;
  y1 := 112;
  for v:=1 to 9 do
  begin
    MMouse(x1, y1, 5, 5);
    wait(100)
    ClickMouse2(mouse_left);
    for i:=1 to 81 do
    begin
      if (strtoint(ansArray[i]) = v) then
      begin
        if not (strtoint(numbstring[i]) = v) then
        begin
          MMouse(((133)+(37*((i-1) mod 9))), ((22)+(37*((i-1)/9))), 3, 3);
          wait(50+random(55));
          ClickMouse2(mouse_left);
          wait(ClickDelay+random(2));
        end;
      end;
    end;
    y1 := y1 + 50;
    if (v = 5) then
    begin
      y1 := 160;   //used to be 112
      x1 := x1 + 50;
    end;
  end;
end;

procedure SolveLargePuzzle;
var
  x, y:integer;
begin
  v := 0
  repeat
  wait(100+random(100));
  v := v+1;
//  writeln('1');
  until ((FindColorTolerance(x, y, 797794, 470, 20, 490, 40, 5) or (v = 30)))
  if (FindColorTolerance(x, y, 797794, 470, 20, 490, 40, 5)) then
  begin
 //   writeln('2');
    writeNumbstring;
    writeln(numbstring);
    writeAnsArray(numbstring);
    findAnswer;
    outputPuzzle;
    inputAnswer;
  end;
end;

procedure BuyRunes;
var
  counter, x, y,a,b,c,d,e,f,g,h:integer;  //gotta call the throw away variables
  begin
  if (FindColorTolerance(x, y, 797794, 470, 20, 490, 40, 5)) then
  begin
    MMouse(50, 70, 30, 5);
    wait(50+random(40));
    ClickMouse2(mouse_left);
    Wait(3000+random(500));
    FindNPCChatText('what', Clickleft);
    wait(900);
    //FindColorSpiralTolerance(x, y, 1411858, MSX1, MSY1, MSX2, MSY2, 30); //finds the nature rune

    //Deaths Start
    if (buyDeathRunes = true) then
      begin
        counter := 0;
        while FindColorTolerance(a,b,8290184,136,83,136,83,15) and (counter < 7) do
          begin
            counter := counter + 1;
            mousebox(137,79,149,91,mouse_right);
            wait(150+random(50));
            waitoption('10',mouse_left);
            wait(100);
          end;
      end;

    //Minds Start
    if (buyMindRunes = true) then
      begin
        counter := 0;
        while FindColorTolerance(c,d,8158598,181,83,181,83,15) and (counter < 7) do
          begin
            counter := counter + 1;
            mousebox(185,80,195,91,mouse_right);
            wait(200+random(50));
            waitoption('10',mouse_left);
            wait(100);
          end;
      end;

    //Nats Start
    if (buyNatureRunes = true) then
      begin
        counter := 0;
        while FindColorTolerance(e,f,7434874,274,87,274,87,15) and (counter < 7)  do
          begin
            counter := counter + 1;
            mousebox(278,80,290,92,mouse_right);
            wait(200+random(50));
            waitoption('10',mouse_left);
            wait(100);
          end;
      end;

      //Chaos
      if (buyChaosRunes = true) then
        begin
          counter := 0;
          while FindColorTolerance(g,h,1812704,374,81,374,81,15) and (counter < 7) do
            begin
              counter := counter + 1;
              MMouse(373,82,5,5);
              wait(115);
              ClickMouse2(mouse_right);
              wait(150+random(50));
              waitoption('10',mouse_left);
              wait(100);
          end;
        end;
    //Cosmics Start
    if (buyCosmicRunes = true) then
      begin
        counter := 0;
        while FindColorTolerance(g,h,8421770,87,129,87,129,15) and (counter < 8) do
          begin
            counter := counter + 1;
            mousebox(91,127,101,138,mouse_right);
            wait(200+random(50));
            waitoption('10',mouse_left);
            wait(100);
          end;
      end;
      wait(200);
      MMouse(484, 39, 5, 5);
      wait(200);
      ClickMouse2(mouse_left);
    end;
          //put buy stuff here
  end;
Procedure MainLoop;
    var
      a, b, c, d:integer;  //gotta call the throw away variables
  begin
    CheckIfLoggedOut;
    MakeCompass(-95+random(40));
    TalkToAli;
    Try
      begin
        SolveLargePuzzle;
        BuyRunes;
        Writeln('RunTime : '+TimeRunning);
        Writeln('Caskets Opened : '+toStr(count));
        Writeln('Large caskets per hour : ' + toStr((3600000*count)/GetTimeRunning));
      end;
    Except
      if (FindColorTolerance(a,b,797794,67,39,67,39,15)) then
        begin
          MMouse(19, 19, 5, 5);
          wait(200);
          ClickMouse2(mouse_left);
          Writeln('We have encountered an error solving this puzzle.');
          Writeln('Starting a new puzzle... (This used to break our script.)');
          wait(200);
        end
        else
          begin
            Writeln('We have encountered an error somewhere...');
            Writeln('We are somehow also not on the Rune Sudoku screen anymore...');
            Writeln('Attempting to log out and then back in to restart the script.');
            MMouse(642, 483, 5, 5);
            ClickMouse2(mouse_left);
            wait(200);
            MMouse(637, 375, 5, 5);
            ClickMouse2(mouse_left);
            wait(5000);
            if (FindColorTolerance(c,d,5458504,356,215,356,215,15)) then //Checks for login screen
              begin
                MMouse(437, 288, 5, 5);
                ClickMouse2(mouse_left);
                wait(1000);
                LogIn;
              end;
          end;
      end;
  end;

begin
  SetupSRL();
  Declareplayers;
  LogIn;
  Repeat
    MainLoop;
  Until false;
end.