WARNING:   The web application [] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
SEVERE:   The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@1087985b]) and a value of type [org.hibernate.internal.SessionImpl] (value [SessionImpl(PersistenceContext[entityKeys=[],collectionKeys=[]];ActionQueue[insertions=[] updates=[] deletions=[] collectionCreations=[] collectionRemovals=[] collectionUpdates=[] unresolvedInsertDependencies=UnresolvedEntityInsertActions[]])]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
SEVERE:   The web application [] created a ThreadLocal with key of type [net.sf.json.AbstractJSON$1] (value [net.sf.json.AbstractJSON$1@362386d7]) and a value of type [java.util.HashSet] (value [[]]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
SEVERE:   The web application [] created a ThreadLocal with key of type [net.sf.json.AbstractJSON$1] (value [net.sf.json.AbstractJSON$1@362386d7]) and a value of type [java.util.HashSet] (value [[]]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

<hibernate-configuration>

    <session-factory>

        <!-- Database connection settings -->
        <property name="connection.driver_class">
            com.mysql.jdbc.Driver
        </property>
        <property name="connection.url">
            jdbc:mysql://localhost:3306/myproject
        </property>
        <property name="connection.username">root</property>
        <property name="connection.password"></property>

        <!-- JDBC connection pool (use the built-in) -->
        <property name="connection.pool_size">12</property>

        <!-- SQL dialect -->
        <property name="dialect">
            org.hibernate.dialect.MySQLDialect
        </property>



        <!-- Enable Hibernate's automatic session context management -->
        <property name="current_session_context_class">thread</property>

<!--         Disable the second-level cache -->

<!-- <property name="cache.provider_class">
            org.hibernate.cache.EhCacheProvider
        </property>

        <property name="hibernate.cache.use_query_cache">true</property>-->


        <!-- Echo all executed SQL to stdout -->
        <property name="show_sql">true</property>

public class HibernateUtil {

   private static ServiceRegistry serviceRegistry;
   private static final ThreadLocal<Session> threadLocal = new ThreadLocal();
   private static SessionFactory sessionFactory;

   private static SessionFactory configureSessionFactory() {
        try {
            Configuration configuration = new Configuration();
            configuration.configure();
            serviceRegistry = new ServiceRegistryBuilder().applySettings(configuration.getProperties()).buildServiceRegistry();

            sessionFactory = configuration.buildSessionFactory(serviceRegistry);

            return sessionFactory;
        } catch (HibernateException e) {
            System.out.append("** Exception in SessionFactory **");
            e.printStackTrace();
        }
       return sessionFactory;
  }

  static {
    try {
      sessionFactory = configureSessionFactory();
    } catch (Exception e) {
      System.err.println("%%%% Error Creating SessionFactory %%%%");
      e.printStackTrace();
    }
  }

  private HibernateUtil() {
  }

  public static SessionFactory getSessionFactory() {
    return sessionFactory;
  }

  public static Session getSession() throws HibernateException {
    Session session = threadLocal.get();

    if (session == null || !session.isOpen()) {
      if (sessionFactory == null) {
        rebuildSessionFactory();
      }
      session = (sessionFactory != null) ? sessionFactory.openSession() : null;
      threadLocal.set(session);
    }

    return session;
  }

  public static void rebuildSessionFactory() {
    try {
      sessionFactory = configureSessionFactory();
    } catch (Exception e) {
      System.err.println("%%%% Error Creating SessionFactory %%%%");
      e.printStackTrace();
    }
  }

  public static void closeSession() throws HibernateException {
    Session session = (Session) threadLocal.get();
    threadLocal.set(null);

    if (session != null) {
      session.close();
    }
  }
}

String url = "your JDBC url";
Driver driver = DriverManager.getDriver(url);
DriverManager.deregisterDriver(driver);

public class CleanupListener implements ServletContextListener {

    public void contextDestroyed(ServletContextEvent arg0) {
        // enter cleanup code here
    }

    public void contextInitialized(ServletContextEvent arg0) { }
}

<listener>
    <listener-class>com.example.CleanupListener</listener-class>
</listener>