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  1. Charmrun> scalable start enabled.
  2. Charmrun> started all node programs in 1.204 seconds.
  3. Charm++> Running in SMP mode: 4 processes, 1 worker threads (PEs) + 1 comm threads per process, 4 PEs total
  4. Charm++> The comm. thread both sends and receives messages
  5. Converse/Charm++ Commit ID: v6.10.1
  6. Warning> Randomization of virtual memory (ASLR) is turned on in the kernel, thread migration may not work! Run 'echo 0 > /proc/sys/kernel/randomize_va_space' as root to disable it, or try running with '+isomalloc_sync'.
  7. Charm++> scheduler running in netpoll mode.
  8. CharmLB> Load balancer assumes all CPUs are same.
  9. Charm++> Running on 1 hosts (1 sockets x 4 cores x 2 PUs = 8-way SMP)
  10. Charm++> cpu topology info is gathered in 0.003 seconds.
  11. 0 00000.00 Parameters Boundary:type = "reflecting"
  12. 0 00000.00 Parameters Domain:lower = [ 0.000000000000000 0.000000000000000 ]
  13. 0 00000.00 Parameters Domain:upper = [ 1.000000000000000 1.000000000000000 ]
  14. 0 00000.00 Parameters Field:alignment = 8
  15. 0 00000.00 Parameters Field:gamma = 1.400000000000000
  16. 0 00000.00 Parameters Field:ghost_depth = 3
  17. 0 00000.00 Parameters Field:list = [ "density" "velocity_x" "velocity_y" "total_energy" "internal_energy" "pressure" ]
  18. 0 00000.00 Parameters Field:padding = 0
  19. 0 00000.00 Parameters Group:conserved:field_list = [ "density" "internal_energy" "total_energy" ]
  20. 0 00000.00 Parameters Group:list = [ "conserved" "make_field_conservative" ]
  21. 0 00000.00 Parameters Group:make_field_conservative:field_list = [ "velocity_x" "velocity_y" "internal_energy" "total_energy" ]
  22. 0 00000.00 Parameters Initial:list = [ "value" ]
  23. 0 00000.00 Parameters Initial:value:density = [ 0.1250000000000000 ( x + y ) < 0.5000000000000000 1.000000000000000 ]
  24. 0 00000.00 Parameters Initial:value:internal_energy = 0.000000000000000
  25. 0 00000.00 Parameters Initial:value:pressure = 0.000000000000000
  26. 0 00000.00 Parameters Initial:value:total_energy = [ 2.800000000000000 ( x + y ) < 0.5000000000000000 2.500000000000000 ]
  27. 0 00000.00 Parameters Initial:value:velocity_x = 0.000000000000000
  28. 0 00000.00 Parameters Initial:value:velocity_y = 0.000000000000000
  29. 0 00000.00 Parameters Mesh:root_blocks = [ 2 4 ]
  30. 0 00000.00 Parameters Mesh:root_rank = 2
  31. 0 00000.00 Parameters Mesh:root_size = [ 80 80 ]
  32. 0 00000.00 Parameters Method:flux_correct:enable = true
  33. 0 00000.00 Parameters Method:list = [ "ppm" "flux_correct" ]
  34. 0 00000.00 Parameters Method:ppm:courant = 0.8000000000000000
  35. 0 00000.00 Parameters Method:ppm:diffusion = true
  36. 0 00000.00 Parameters Method:ppm:dual_energy = false
  37. 0 00000.00 Parameters Method:ppm:flattening = 3
  38. 0 00000.00 Parameters Method:ppm:steepening = true
  39. 0 00000.00 Parameters Output:data:field_list = [ "density" ]
  40. 0 00000.00 Parameters Output:data:name = [ "method_ppm-8-%02d-%06d.h5" "proc" "cycle" ]
  41. 0 00000.00 Parameters Output:data:schedule:step = 100
  42. 0 00000.00 Parameters Output:data:schedule:var = "cycle"
  43. 0 00000.00 Parameters Output:data:type = "data"
  44. 0 00000.00 Parameters Output:density:colormap = [ 0.000000000000000 0.000000000000000 0.000000000000000 1.000000000000000 0.000000000000000 0.000000000000000 1.000000000000000 1.000000000000000 0.000000000000000 1.000000000000000 1.000000000000000 1.000000000000000 ]
  45. 0 00000.00 Parameters Output:density:field_list = [ "density" ]
  46. 0 00000.00 Parameters Output:density:name = [ "method_ppm-8-%06d.png" "cycle" ]
  47. 0 00000.00 Parameters Output:density:schedule:step = 10
  48. 0 00000.00 Parameters Output:density:schedule:var = "cycle"
  49. 0 00000.00 Parameters Output:density:type = "image"
  50. 0 00000.00 Parameters Output:list = [ "density" "data" ]
  51. 0 00000.00 Parameters Stopping:cycle = 400
  52. 0 00000.00 Parameters Testing:cycle_final = 400
  53. 0 00000.00 Parameters Testing:time_final = [ 1.040697626243710 ]
  54. 0 00000.00 Parameters Testing:time_tolerance = 0.0001000000000000000
  55. 0 00001.02 WARNING parameters_Config.cpp:950
  56. 0 00001.02 WARNING Config::read()
  57. 0 00001.02 WARNING output_axis[0] set to z
  58. UNIT TEST BEGIN
  59. 0 00001.03 ==============================================
  60. 0 00001.03
  61. 0 00001.03 .oooooo. oooo oooo
  62. 0 00001.03 d8P' `Y8b `888 `888
  63. 0 00001.03 888 .ooooo. 888 888 .ooooo.
  64. 0 00001.03 888 d88' `88b 888 888 d88' `88b
  65. 0 00001.03 888 888ooo888 888 888 888 888
  66. 0 00001.03 `88b ooo 888 .o 888 888 888 888
  67. 0 00001.03 `Y8bood8P' `Y8bod8P' o888o o888o `Y8bod8P'
  68. 0 00001.03
  69. 0 00001.03 A Parallel Adaptive Mesh Refinement Framework
  70. 0 00001.03
  71. 0 00001.03 Laboratory for Computational Astrophysics
  72. 0 00001.03 San Diego Supercomputer Center
  73. 0 00001.03 University of California, San Diego
  74. 0 00001.03
  75. 0 00001.03 See 'LICENSE_CELLO' for software license information
  76. 0 00001.03
  77. 0 00001.03 BEGIN CELLO: Jul 02 12:38:03
  78. 0 00001.03 Define Simulation processors 4
  79. 0 00001.03 Define CELLO_ARCH linux_gnu
  80. 0 00001.03 Define CELLO_PREC double
  81. 0 00001.03 Define CC gcc
  82. 0 00001.03 Define CFLAGS -O3 -g -ffast-math -funroll-loops -fPIC -pedantic
  83. 0 00001.03 Define CPPDEFINES CONFIG_PRECISION_DOUBLE SMALL_INTS {'CONFIG_NODE_SIZE': 64} {'CONFIG_NODE_SIZE_3': 192} NO_FREETYPE CONFIG_USE_PERFORMANCE CONFIG_USE_GRACKLE CONFIG_USE_MEMORY CONFIG_HAVE_VERSION_CONTROL
  84. 0 00001.03 Define CPPPATH #/include /usr/include/hdf5/serial /usr/include/boost /home/mabruzzo/packages/c++/grackle/include /lib/x86_64-linux-gnu/include
  85. 0 00001.03 Define CXX /home/mabruzzo/packages/c++/charm/bin/charmc -language charm++
  86. 0 00001.03 Define CXXFLAGS -O3 -g -ffast-math -funroll-loops -fPIC -pedantic -balancer CommonLBs
  87. 0 00001.03 Define FORTRANFLAGS -O3 -g -ffast-math -funroll-loops -fPIC -pedantic -ffixed-line-length-132 -fdefault-real-8 -fdefault-double-8
  88. 0 00001.03 Define FORTRAN gfortran
  89. 0 00001.03 Define FORTRANLIBS gfortran
  90. 0 00001.03 Define FORTRANPATH #/include
  91. 0 00001.03 Define LIBPATH #/lib /usr/lib/x86_64-linux-gnu/hdf5/serial /usr/lib/x86_64-linux-gnu /home/mabruzzo/packages/c++/grackle/lib /lib/x86_64-linux-gnu/lib /usr/lib/x86_64-linux-gnu
  92. 0 00001.03 Define LINKFLAGS -O3 -g -ffast-math -funroll-loops -fPIC -pedantic -module CommonLBs
  93. 0 00001.03 Define BUILD HOST charlie
  94. 0 00001.03 Define BUILD DIR /home/mabruzzo/hydro/enzo-e
  95. 0 00001.03 Define BUILD DATE (UTC) 2021-06-25
  96. 0 00001.03 Define BUILD TIME (UTC) 14:36:45
  97. 0 00001.03 Define CHANGESET b'55efdcd2ca6cacfd2f966e54d4b349a0246ef260'
  98. 0 00001.03 Define NEW_OUTPUT no
  99. 0 00001.03 Define CHARM_PATH /home/mabruzzo/packages/c++/charm
  100. 0 00001.03 Define CHARM_VERSION 61001
  101. 0 00001.03 Define CHARM_BUILD netlrts-linux-x86_64-smp
  102. 0 00001.03 Define CONFIG_NODE_SIZE 64
  103. 0 00001.03 Define CONFIG_SMP_MODE no
  104. 0 00001.03 CHARM CkNumPes() 4
  105. 0 00001.03 CHARM CkNumNodes() 4
  106. 0 00001.03 BEGIN ENZO-E
  107. 0 00001.03 Memory bytes 206494 bytes_high 206548
  108. 0 00001.04 WARNING problem_InitialValue.cpp:145
  109. 0 00001.04 WARNING InitialValue::enforce_block
  110. 0 00001.04 WARNING Uninitialized field acceleration_x
  111. 0 00001.04 WARNING problem_InitialValue.cpp:145
  112. 0 00001.04 WARNING InitialValue::enforce_block
  113. 0 00001.04 WARNING Uninitialized field acceleration_y
  114. 0 00001.04 WARNING problem_InitialValue.cpp:145
  115. 0 00001.04 WARNING InitialValue::enforce_block
  116. 0 00001.04 WARNING Uninitialized field velocity_z
  117. 0 00001.04 WARNING problem_InitialValue.cpp:145
  118. 0 00001.04 WARNING InitialValue::enforce_block
  119. 0 00001.04 WARNING Uninitialized field acceleration_z
  120. 0 00001.08 Output writing image file ./method_ppm-8-000000.png
  121. 0 00001.08 Output writing data file ./method_ppm-8-00-000000.h5
  122. 0 00001.09 -------------------------------------
  123. 0 00001.09 Simulation cycle 0000
  124. 0 00001.09 Simulation time-sim 0.000000000000e+00
  125. 0 00001.09 Simulation dt 0.000000000000e+00
  126. 0 00001.09 Performance counter num-msg-coarsen 0
  127. 0 00001.09 Performance counter num-msg-refine 6
  128. 0 00001.09 Performance counter num-msg-refresh 0
  129. 0 00001.09 Performance counter num-data-msg 0
  130. 0 00001.09 Performance counter num-field-face 0
  131. 0 00001.09 Performance counter num-particle-data 8
  132. 0 00001.09 Performance simulation num-particles total 0
  133. 0 00001.09 performance simulation num-blocks-level 0 8
  134. 0 00001.09 Performance simulation num-leaf-blocks 8
  135. 0 00001.09 Performance simulation num-total-blocks 8
  136. 0 00001.09 Performance simulation time-usec 207793
  137. 0 00001.09 Performance cycle time-usec 0
  138. 0 00001.09 Performance cycle bytes-curr 0
  139. 0 00001.09 Performance cycle bytes-high 0
  140. 0 00001.09 Performance cycle bytes-highest 0
  141. 0 00001.09 Performance cycle bytes-available 0
  142. 0 00001.09 Performance initial time-usec -2986
  143. 0 00001.09 Performance adapt_apply time-usec 47
  144. 0 00001.09 Performance adapt_apply_sync time-usec 10
  145. 0 00001.09 Performance adapt_update time-usec 110
  146. 0 00001.09 Performance adapt_update_sync time-usec 74245
  147. 0 00001.09 Performance adapt_notify time-usec 339
  148. 0 00001.09 Performance adapt_notify_sync time-usec 7
  149. 0 00001.09 Performance adapt_end time-usec 7
  150. 0 00001.09 Performance adapt_end_sync time-usec 682
  151. 0 00001.09 Performance refresh_store time-usec 0
  152. 0 00001.09 Performance refresh_child time-usec 0
  153. 0 00001.09 Performance refresh_exit time-usec 0
  154. 0 00001.09 Performance refresh_store_sync time-usec 0
  155. 0 00001.09 Performance refresh_child_sync time-usec 0
  156. 0 00001.09 Performance refresh_exit_sync time-usec 0
  157. 0 00001.09 Performance control time-usec 11
  158. 0 00001.09 Performance compute time-usec 0
  159. 0 00001.09 Performance output time-usec 17665
  160. 0 00001.09 Performance stopping time-usec 0
  161. 0 00001.09 Performance block time-usec 3110
  162. 0 00001.09 Performance exit time-usec 0
  163. 0 00001.09 Performance grackle time-usec 0
  164. 0 00001.09 Performance simulation max-proc-blocks 2
  165. 0 00001.09 Performance simulation max-node-blocks 2
  166. 0 00001.09 Performance simulation max-proc-particles 0
  167. 0 00001.09 Performance simulation max-node-particles 0
  168. 0 00001.09 Performance simulation balance-eff-blocks-core 1.000000 (2/2)
  169. 0 00001.09 Performance simulation balance-eff-blocks-node 1.000000 (2/2)
  170. ------------- Processor 1 Exiting: Caught Signal ------------
  171. Reason: segmentation violation
  172. Suggestion: Try running with '++debug', or linking with '-memory paranoid' (memory paranoid requires '+netpoll' at runtime).
  173. ------------- Processor 2 Exiting: Caught Signal ------------
  174. Reason: segmentation violation
  175. Suggestion: Try running with '++debug', or linking with '-memory paranoid' (memory paranoid requires '+netpoll' at runtime).
  176. ------------- Processor 3 Exiting: Caught Signal ------------
  177. Reason: segmentation violation
  178. Suggestion: Try running with '++debug', or linking with '-memory paranoid' (memory paranoid requires '+netpoll' at runtime).
  179. [1] Stack Traceback:
  180. [1:0] libpthread.so.0 0x7fae8d0463c0
  181. [3] Stack Traceback:
  182. [2] Stack Traceback:
  183. [2:0] libpthread.so.0 0x7fae8d0463c0
  184. [3:0] libpthread.so.0 0x7fae8d0463c0
  185. [1:1] enzo-e 0x563027f1e20d xeuler_sweep_
  186. [2:1] enzo-e 0x563027f1e20d xeuler_sweep_
  187. [1:2] enzo-e 0x563027eed3ba ppm_de_
  188. [3:1] enzo-e 0x563027f1e20d xeuler_sweep_
  189. [1:3] enzo-e 0x563027eb4555 EnzoBlock::SolveHydroEquations(double, double, bool)
  190. [2:2] enzo-e 0x563027eed3ba ppm_de_
  191. [3:2] enzo-e 0x563027eed3ba ppm_de_
  192. [1:4] enzo-e 0x563027e5fdf9 EnzoMethodPpm::compute(Block*)
  193. [2:3] enzo-e 0x563027eb4555 EnzoBlock::SolveHydroEquations(double, double, bool)
  194. [3:3] enzo-e 0x563027eb4555 EnzoBlock::SolveHydroEquations(double, double, bool)
  195. [1:5] enzo-e 0x563027fa569e Block::compute_continue_()
  196. [2:4] enzo-e 0x563027e5fdf9 EnzoMethodPpm::compute(Block*)
  197. [1:6] enzo-e 0x563027f369e0 CkIndex_Block::_call_p_compute_continue_void(void*, void*)
  198. [3:4] enzo-e 0x563027e5fdf9 EnzoMethodPpm::compute(Block*)
  199. [1:7] enzo-e 0x563027c10003 CkDeliverMessageFree
  200. [2:5] enzo-e 0x563027fa569e Block::compute_continue_()
  201. [1:8] enzo-e 0x563027c3d6fc CkLocRec::invokeEntry(CkMigratable*, void*, int, bool)
  202. [3:5] enzo-e 0x563027fa569e Block::compute_continue_()
  203. [1:9] enzo-e 0x563027c18610 _processHandler(void*, CkCoreState*)
  204. [2:6] enzo-e 0x563027f369e0 CkIndex_Block::_call_p_compute_continue_void(void*, void*)
  205. [3:6] enzo-e 0x563027f369e0 CkIndex_Block::_call_p_compute_continue_void(void*, void*)
  206. [1:10] enzo-e 0x563027d2ed87 CsdScheduleForever
  207. [2:7] enzo-e 0x563027c10003 CkDeliverMessageFree
  208. [3:7] enzo-e 0x563027c10003 CkDeliverMessageFree
  209. [1:11] enzo-e 0x563027d2f465 CsdScheduler
  210. [2:8] enzo-e 0x563027c3d6fc CkLocRec::invokeEntry(CkMigratable*, void*, int, bool)
  211. [3:8] enzo-e 0x563027c3d6fc CkLocRec::invokeEntry(CkMigratable*, void*, int, bool)
  212. [1:12] enzo-e 0x563027d2a43e
  213. [2:9] enzo-e 0x563027c18610 _processHandler(void*, CkCoreState*)
  214. [3:9] enzo-e 0x563027c18610 _processHandler(void*, CkCoreState*)
  215. [1:13] enzo-e 0x563027d2bb04 ConverseInit
  216. [1:14] enzo-e 0x563027c052bd charm_main
  217. [1:15] libc.so.6 0x7fae8c3fe0b3 __libc_start_main
  218. [2:10] enzo-e 0x563027d2ed87 CsdScheduleForever
  219. [3:10] enzo-e 0x563027d2ed87 CsdScheduleForever
  220. [1:16] enzo-e 0x563027b8751e _start
  221. Fatal error on PE 1> segmentation violation
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