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misnomer001

caucasus eneolithic pass

misnomer001
Jan 27th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 1818199523
  4.  
  5. left pops:
  6. Caucasus_Eneolithic
  7. Georgia_Kotias.SG
  8. Geoksyur_EN
  9. Anatolia_N
  10.  
  11. right pops:
  12. Mbuti.DG
  13. USA_WA_Kennewick.SG
  14. Morocco_Iberomaurusian
  15. Kazakhstan_Botai.SG
  16. Ganj_Dareh_N
  17. PPN
  18. Natufian
  19. Iberia_MN
  20. Russia_MA1.SG
  21. Georgia_Satsurblia.SG
  22. Kostenki14.SG
  23. EEHG
  24. WEHG
  25. WSHG
  26. Onge.DG
  27. Russia_Shamanka_EN.SG
  28. Ethiopia_4500BP.SG
  29.  
  30. 0 Caucasus_Eneolithic 3
  31. 1 Georgia_Kotias.SG 1
  32. 2 Geoksyur_EN 21
  33. 3 Anatolia_N 22
  34. 4 Mbuti.DG 5
  35. 5 USA_WA_Kennewick.SG 1
  36. 6 Morocco_Iberomaurusian 6
  37. 7 Kazakhstan_Botai.SG 3
  38. 8 Ganj_Dareh_N 7
  39. 9 PPN 8
  40. 10 Natufian 6
  41. 11 Iberia_MN 4
  42. 12 Russia_MA1.SG 1
  43. 13 Georgia_Satsurblia.SG 1
  44. 14 Kostenki14.SG 1
  45. 15 EEHG 4
  46. 16 WEHG 36
  47. 17 WSHG 3
  48. 18 Onge.DG 2
  49. 19 Russia_Shamanka_EN.SG 10
  50. 20 Ethiopia_4500BP.SG 1
  51. jackknife block size: 0.050
  52. snps: 1150536 indivs: 146
  53. number of blocks for block jackknife: 552
  54. ## ncols: 1150536
  55. coverage: Caucasus_Eneolithic 784983
  56. coverage: Georgia_Kotias.SG 1149097
  57. coverage: Geoksyur_EN 1018577
  58. coverage: Anatolia_N 1134099
  59. coverage: Mbuti.DG 1150376
  60. coverage: USA_WA_Kennewick.SG 640773
  61. coverage: Morocco_Iberomaurusian 1101342
  62. coverage: Kazakhstan_Botai.SG 1149870
  63. coverage: Ganj_Dareh_N 1029695
  64. coverage: PPN 835499
  65. coverage: Natufian 535079
  66. coverage: Iberia_MN 967760
  67. coverage: Russia_MA1.SG 805960
  68. coverage: Georgia_Satsurblia.SG 801311
  69. coverage: Kostenki14.SG 1048972
  70. coverage: EEHG 1029995
  71. coverage: WEHG 1141246
  72. coverage: WSHG 858019
  73. coverage: Onge.DG 1120748
  74. coverage: Russia_Shamanka_EN.SG 1149998
  75. coverage: Ethiopia_4500BP.SG 1149598
  76. dof (jackknife): 464.029
  77. numsnps used: 1150536
  78. codimension 1
  79. f4info:
  80. f4rank: 2 dof: 14 chisq: 20.156 tail: 0.125311534 dofdiff: 16 chisqdiff: -20.156 taildiff: 1
  81. B:
  82. scale 1.000 1.000
  83. USA_WA_Kennewick.SG -0.269 -0.300
  84. Morocco_Iberomaurusian 0.858 0.342
  85. Kazakhstan_Botai.SG -0.563 -0.721
  86. Ganj_Dareh_N -1.222 -1.516
  87. PPN 1.956 0.297
  88. Natufian 1.428 0.314
  89. Iberia_MN 2.001 0.705
  90. Russia_MA1.SG -0.384 -0.573
  91. Georgia_Satsurblia.SG -1.258 3.157
  92. Kostenki14.SG 0.489 0.390
  93. EEHG -0.054 0.071
  94. WEHG 1.033 0.758
  95. WSHG -0.630 -1.108
  96. Onge.DG -0.157 -0.143
  97. Russia_Shamanka_EN.SG -0.193 -0.018
  98. Ethiopia_4500BP.SG 0.116 0.134
  99. A:
  100. scale 621.261 1435.369
  101. Georgia_Kotias.SG -0.877 1.035
  102. Geoksyur_EN -0.597 -1.335
  103. Anatolia_N 1.369 -0.384
  104.  
  105.  
  106. full rank
  107. f4info:
  108. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 14 chisqdiff: 20.156 taildiff: 0.125311534
  109. B:
  110. scale 1.000 1.000 1.000
  111. USA_WA_Kennewick.SG -0.252 -0.310 1.304
  112. Morocco_Iberomaurusian 0.859 0.305 -0.013
  113. Kazakhstan_Botai.SG -0.560 -0.761 0.524
  114. Ganj_Dareh_N -1.210 -1.544 -0.247
  115. PPN 1.951 0.294 0.328
  116. Natufian 1.436 0.299 0.122
  117. Iberia_MN 1.992 0.709 1.152
  118. Russia_MA1.SG -0.397 -0.591 0.066
  119. Georgia_Satsurblia.SG -1.292 3.129 0.161
  120. Kostenki14.SG 0.482 0.377 0.023
  121. EEHG -0.063 0.051 -1.947
  122. WEHG 1.022 0.747 -1.730
  123. WSHG -0.631 -1.129 0.296
  124. Onge.DG -0.157 -0.167 -0.430
  125. Russia_Shamanka_EN.SG -0.200 -0.039 2.327
  126. Ethiopia_4500BP.SG 0.108 0.137 0.093
  127. A:
  128. scale 623.424 1459.744 4694.748
  129. Georgia_Kotias.SG -0.892 1.070 1.238
  130. Geoksyur_EN -0.600 -1.326 0.834
  131. Anatolia_N 1.358 -0.311 0.879
  132.  
  133.  
  134. best coefficients: 0.417 0.219 0.363
  135. Jackknife mean: 0.415362881 0.221351567 0.363285552
  136. std. errors: 0.047 0.048 0.022
  137.  
  138. error covariance (* 1000000)
  139. 2238 -2013 -226
  140. -2013 2277 -264
  141. -226 -264 490
  142.  
  143.  
  144. summ: Caucasus_Eneolithic 3 0.125312 0.415 0.221 0.363 2238 -2013 -226 2277 -264 490
  145.  
  146. fixed pat wt dof chisq tail prob
  147. 000 0 14 20.156 0.125312 0.417 0.219 0.363
  148. 001 1 15 234.273 0 1.185 -0.185 0.000 infeasible
  149. 010 1 15 38.979 0.000645512 0.619 -0.000 0.381
  150. 100 1 15 112.298 5.83116e-17 -0.000 0.602 0.398
  151. 011 2 16 233.692 0 1.000 -0.000 0.000
  152. 101 2 16 398.417 0 0.000 1.000 0.000
  153. 110 2 16 720.414 0 0.000 0.000 1.000
  154. best pat: 000 0.125312 - -
  155. best pat: 010 0.000645512 chi(nested): 18.823 p-value for nested model: 1.43401e-05
  156. best pat: 011 1.12671e-40 chi(nested): 194.713 p-value for nested model: 2.97555e-44
  157.  
  158. coeffs: 0.417 0.219 0.363
  159.  
  160. ## dscore:: f_4(Base, Fit, Rbase, right2)
  161. ## genstat:: f_4(Base, Fit, right1, right2)
  162.  
  163. details: Georgia_Kotias.SG USA_WA_Kennewick.SG 0.000650 1.931052
  164. details: Geoksyur_EN USA_WA_Kennewick.SG 0.000928 3.100445
  165. details: Anatolia_N USA_WA_Kennewick.SG -0.000024 -0.074211
  166. dscore: USA_WA_Kennewick.SG f4: 0.000466 Z: 1.657488
  167.  
  168. details: Georgia_Kotias.SG Morocco_Iberomaurusian -0.000930 -2.505700
  169. details: Geoksyur_EN Morocco_Iberomaurusian -0.001015 -3.532712
  170. details: Anatolia_N Morocco_Iberomaurusian 0.001902 6.753662
  171. dscore: Morocco_Iberomaurusian f4: 0.000080 Z: 0.288649
  172.  
  173. details: Georgia_Kotias.SG Kazakhstan_Botai.SG 0.000515 1.248803
  174. details: Geoksyur_EN Kazakhstan_Botai.SG 0.001473 4.821084
  175. details: Anatolia_N Kazakhstan_Botai.SG -0.000844 -2.847957
  176. dscore: Kazakhstan_Botai.SG f4: 0.000231 Z: 0.766595
  177.  
  178. details: Georgia_Kotias.SG Ganj_Dareh_N 0.000719 1.818644
  179. details: Geoksyur_EN Ganj_Dareh_N 0.002641 8.565482
  180. details: Anatolia_N Ganj_Dareh_N -0.002237 -7.429073
  181. dscore: Ganj_Dareh_N f4: 0.000067 Z: 0.223541
  182.  
  183. details: Georgia_Kotias.SG PPN -0.002312 -5.803111
  184. details: Geoksyur_EN PPN -0.001943 -6.467400
  185. details: Anatolia_N PPN 0.004391 14.284053
  186. dscore: PPN f4: 0.000203 Z: 0.680773
  187.  
  188. details: Georgia_Kotias.SG Natufian -0.001723 -5.439388
  189. details: Geoksyur_EN Natufian -0.001541 -5.301022
  190. details: Anatolia_N Natufian 0.003198 10.364927
  191. dscore: Natufian f4: 0.000104 Z: 0.393049
  192.  
  193. details: Georgia_Kotias.SG Iberia_MN -0.001926 -4.962297
  194. details: Geoksyur_EN Iberia_MN -0.002265 -7.212448
  195. details: Anatolia_N Iberia_MN 0.004485 14.347712
  196. dscore: Iberia_MN f4: 0.000328 Z: 1.101974
  197.  
  198. details: Georgia_Kotias.SG Russia_MA1.SG 0.000294 0.624785
  199. details: Geoksyur_EN Russia_MA1.SG 0.001069 3.025701
  200. details: Anatolia_N Russia_MA1.SG -0.000648 -1.760819
  201. dscore: Russia_MA1.SG f4: 0.000122 Z: 0.348535
  202.  
  203. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.004374 8.830895
  204. details: Geoksyur_EN Georgia_Satsurblia.SG -0.001457 -3.961941
  205. details: Anatolia_N Georgia_Satsurblia.SG -0.003337 -9.127188
  206. dscore: Georgia_Satsurblia.SG f4: 0.000294 Z: 0.809406
  207.  
  208. details: Georgia_Kotias.SG Kostenki14.SG -0.000317 -0.660027
  209. details: Geoksyur_EN Kostenki14.SG -0.000695 -1.866811
  210. details: Anatolia_N Kostenki14.SG 0.001055 2.870681
  211. dscore: Kostenki14.SG f4: 0.000099 Z: 0.273959
  212.  
  213. details: Georgia_Kotias.SG EEHG -0.000390 -0.806963
  214. details: Geoksyur_EN EEHG -0.000296 -0.851941
  215. details: Anatolia_N EEHG -0.000507 -1.457858
  216. dscore: EEHG f4: -0.000412 Z: -1.170325
  217.  
  218. details: Georgia_Kotias.SG WEHG -0.001242 -3.112571
  219. details: Geoksyur_EN WEHG -0.001842 -6.183696
  220. details: Anatolia_N WEHG 0.001856 6.155610
  221. dscore: WEHG f4: -0.000248 Z: -0.829908
  222.  
  223. details: Georgia_Kotias.SG WSHG 0.000273 0.620713
  224. details: Geoksyur_EN WSHG 0.001808 5.256769
  225. details: Anatolia_N WSHG -0.000995 -2.875425
  226. dscore: WSHG f4: 0.000149 Z: 0.443601
  227.  
  228. details: Georgia_Kotias.SG Onge.DG 0.000145 0.358381
  229. details: Geoksyur_EN Onge.DG 0.000369 1.201478
  230. details: Anatolia_N Onge.DG -0.000248 -0.802450
  231. dscore: Onge.DG f4: 0.000052 Z: 0.172231
  232.  
  233. details: Georgia_Kotias.SG Russia_Shamanka_EN.SG 0.001008 2.648774
  234. details: Geoksyur_EN Russia_Shamanka_EN.SG 0.000772 2.601662
  235. details: Anatolia_N Russia_Shamanka_EN.SG 0.000100 0.356752
  236. dscore: Russia_Shamanka_EN.SG f4: 0.000626 Z: 2.185473
  237.  
  238. details: Georgia_Kotias.SG Ethiopia_4500BP.SG 0.000065 0.193199
  239. details: Geoksyur_EN Ethiopia_4500BP.SG -0.000140 -0.572863
  240. details: Anatolia_N Ethiopia_4500BP.SG 0.000285 1.159116
  241. dscore: Ethiopia_4500BP.SG f4: 0.000100 Z: 0.407890
  242.  
  243. gendstat: Mbuti.DG USA_WA_Kennewick.SG 1.657
  244. gendstat: Mbuti.DG Morocco_Iberomaurusian 0.289
  245. gendstat: Mbuti.DG Kazakhstan_Botai.SG 0.767
  246. gendstat: Mbuti.DG Ganj_Dareh_N 0.224
  247. gendstat: Mbuti.DG PPN 0.681
  248. gendstat: Mbuti.DG Natufian 0.393
  249. gendstat: Mbuti.DG Iberia_MN 1.102
  250. gendstat: Mbuti.DG Russia_MA1.SG 0.349
  251. gendstat: Mbuti.DG Georgia_Satsurblia.SG 0.809
  252. gendstat: Mbuti.DG Kostenki14.SG 0.274
  253. gendstat: Mbuti.DG EEHG -1.170
  254. gendstat: Mbuti.DG WEHG -0.830
  255. gendstat: Mbuti.DG WSHG 0.444
  256. gendstat: Mbuti.DG Onge.DG 0.172
  257. gendstat: Mbuti.DG Russia_Shamanka_EN.SG 2.185
  258. gendstat: Mbuti.DG Ethiopia_4500BP.SG 0.408
  259. gendstat: USA_WA_Kennewick.SG Morocco_Iberomaurusian -1.172
  260. gendstat: USA_WA_Kennewick.SG Kazakhstan_Botai.SG -0.845
  261. gendstat: USA_WA_Kennewick.SG Ganj_Dareh_N -1.220
  262. gendstat: USA_WA_Kennewick.SG PPN -0.817
  263. gendstat: USA_WA_Kennewick.SG Natufian -1.097
  264. gendstat: USA_WA_Kennewick.SG Iberia_MN -0.433
  265. gendstat: USA_WA_Kennewick.SG Russia_MA1.SG -1.003
  266. gendstat: USA_WA_Kennewick.SG Georgia_Satsurblia.SG -0.437
  267. gendstat: USA_WA_Kennewick.SG Kostenki14.SG -0.977
  268. gendstat: USA_WA_Kennewick.SG EEHG -2.611
  269. gendstat: USA_WA_Kennewick.SG WEHG -2.290
  270. gendstat: USA_WA_Kennewick.SG WSHG -1.000
  271. gendstat: USA_WA_Kennewick.SG Onge.DG -1.282
  272. gendstat: USA_WA_Kennewick.SG Russia_Shamanka_EN.SG 0.591
  273. gendstat: USA_WA_Kennewick.SG Ethiopia_4500BP.SG -1.076
  274. gendstat: Morocco_Iberomaurusian Kazakhstan_Botai.SG 0.486
  275. gendstat: Morocco_Iberomaurusian Ganj_Dareh_N -0.040
  276. gendstat: Morocco_Iberomaurusian PPN 0.397
  277. gendstat: Morocco_Iberomaurusian Natufian 0.077
  278. gendstat: Morocco_Iberomaurusian Iberia_MN 0.783
  279. gendstat: Morocco_Iberomaurusian Russia_MA1.SG 0.112
  280. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG 0.540
  281. gendstat: Morocco_Iberomaurusian Kostenki14.SG 0.049
  282. gendstat: Morocco_Iberomaurusian EEHG -1.388
  283. gendstat: Morocco_Iberomaurusian WEHG -1.050
  284. gendstat: Morocco_Iberomaurusian WSHG 0.196
  285. gendstat: Morocco_Iberomaurusian Onge.DG -0.083
  286. gendstat: Morocco_Iberomaurusian Russia_Shamanka_EN.SG 1.762
  287. gendstat: Morocco_Iberomaurusian Ethiopia_4500BP.SG 0.062
  288. gendstat: Kazakhstan_Botai.SG Ganj_Dareh_N -0.549
  289. gendstat: Kazakhstan_Botai.SG PPN -0.089
  290. gendstat: Kazakhstan_Botai.SG Natufian -0.388
  291. gendstat: Kazakhstan_Botai.SG Iberia_MN 0.312
  292. gendstat: Kazakhstan_Botai.SG Russia_MA1.SG -0.349
  293. gendstat: Kazakhstan_Botai.SG Georgia_Satsurblia.SG 0.162
  294. gendstat: Kazakhstan_Botai.SG Kostenki14.SG -0.384
  295. gendstat: Kazakhstan_Botai.SG EEHG -2.252
  296. gendstat: Kazakhstan_Botai.SG WEHG -1.833
  297. gendstat: Kazakhstan_Botai.SG WSHG -0.318
  298. gendstat: Kazakhstan_Botai.SG Onge.DG -0.591
  299. gendstat: Kazakhstan_Botai.SG Russia_Shamanka_EN.SG 1.609
  300. gendstat: Kazakhstan_Botai.SG Ethiopia_4500BP.SG -0.370
  301. gendstat: Ganj_Dareh_N PPN 0.422
  302. gendstat: Ganj_Dareh_N Natufian 0.111
  303. gendstat: Ganj_Dareh_N Iberia_MN 0.777
  304. gendstat: Ganj_Dareh_N Russia_MA1.SG 0.146
  305. gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG 0.594
  306. gendstat: Ganj_Dareh_N Kostenki14.SG 0.081
  307. gendstat: Ganj_Dareh_N EEHG -1.314
  308. gendstat: Ganj_Dareh_N WEHG -1.010
  309. gendstat: Ganj_Dareh_N WSHG 0.248
  310. gendstat: Ganj_Dareh_N Onge.DG -0.044
  311. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG 1.860
  312. gendstat: Ganj_Dareh_N Ethiopia_4500BP.SG 0.099
  313. gendstat: PPN Natufian -0.351
  314. gendstat: PPN Iberia_MN 0.445
  315. gendstat: PPN Russia_MA1.SG -0.218
  316. gendstat: PPN Georgia_Satsurblia.SG 0.227
  317. gendstat: PPN Kostenki14.SG -0.274
  318. gendstat: PPN EEHG -1.699
  319. gendstat: PPN WEHG -1.558
  320. gendstat: PPN WSHG -0.155
  321. gendstat: PPN Onge.DG -0.454
  322. gendstat: PPN Russia_Shamanka_EN.SG 1.371
  323. gendstat: PPN Ethiopia_4500BP.SG -0.294
  324. gendstat: Natufian Iberia_MN 0.758
  325. gendstat: Natufian Russia_MA1.SG 0.047
  326. gendstat: Natufian Georgia_Satsurblia.SG 0.475
  327. gendstat: Natufian Kostenki14.SG -0.014
  328. gendstat: Natufian EEHG -1.424
  329. gendstat: Natufian WEHG -1.183
  330. gendstat: Natufian WSHG 0.126
  331. gendstat: Natufian Onge.DG -0.154
  332. gendstat: Natufian Russia_Shamanka_EN.SG 1.674
  333. gendstat: Natufian Ethiopia_4500BP.SG -0.011
  334. gendstat: Iberia_MN Russia_MA1.SG -0.563
  335. gendstat: Iberia_MN Georgia_Satsurblia.SG -0.086
  336. gendstat: Iberia_MN Kostenki14.SG -0.636
  337. gendstat: Iberia_MN EEHG -2.225
  338. gendstat: Iberia_MN WEHG -2.307
  339. gendstat: Iberia_MN WSHG -0.524
  340. gendstat: Iberia_MN Onge.DG -0.881
  341. gendstat: Iberia_MN Russia_Shamanka_EN.SG 1.010
  342. gendstat: Iberia_MN Ethiopia_4500BP.SG -0.663
  343. gendstat: Russia_MA1.SG Georgia_Satsurblia.SG 0.394
  344. gendstat: Russia_MA1.SG Kostenki14.SG -0.057
  345. gendstat: Russia_MA1.SG EEHG -1.467
  346. gendstat: Russia_MA1.SG WEHG -1.091
  347. gendstat: Russia_MA1.SG WSHG 0.079
  348. gendstat: Russia_MA1.SG Onge.DG -0.188
  349. gendstat: Russia_MA1.SG Russia_Shamanka_EN.SG 1.497
  350. gendstat: Russia_MA1.SG Ethiopia_4500BP.SG -0.056
  351. gendstat: Georgia_Satsurblia.SG Kostenki14.SG -0.447
  352. gendstat: Georgia_Satsurblia.SG EEHG -1.638
  353. gendstat: Georgia_Satsurblia.SG WEHG -1.392
  354. gendstat: Georgia_Satsurblia.SG WSHG -0.352
  355. gendstat: Georgia_Satsurblia.SG Onge.DG -0.606
  356. gendstat: Georgia_Satsurblia.SG Russia_Shamanka_EN.SG 0.856
  357. gendstat: Georgia_Satsurblia.SG Ethiopia_4500BP.SG -0.478
  358. gendstat: Kostenki14.SG EEHG -1.319
  359. gendstat: Kostenki14.SG WEHG -1.032
  360. gendstat: Kostenki14.SG WSHG 0.133
  361. gendstat: Kostenki14.SG Onge.DG -0.124
  362. gendstat: Kostenki14.SG Russia_Shamanka_EN.SG 1.489
  363. gendstat: Kostenki14.SG Ethiopia_4500BP.SG 0.004
  364. gendstat: EEHG WEHG 0.610
  365. gendstat: EEHG WSHG 1.875
  366. gendstat: EEHG Onge.DG 1.336
  367. gendstat: EEHG Russia_Shamanka_EN.SG 3.266
  368. gendstat: EEHG Ethiopia_4500BP.SG 1.269
  369. gendstat: WEHG WSHG 1.388
  370. gendstat: WEHG Onge.DG 0.972
  371. gendstat: WEHG Russia_Shamanka_EN.SG 3.320
  372. gendstat: WEHG Ethiopia_4500BP.SG 0.998
  373. gendstat: WSHG Onge.DG -0.289
  374. gendstat: WSHG Russia_Shamanka_EN.SG 1.616
  375. gendstat: WSHG Ethiopia_4500BP.SG -0.129
  376. gendstat: Onge.DG Russia_Shamanka_EN.SG 2.090
  377. gendstat: Onge.DG Ethiopia_4500BP.SG 0.137
  378. gendstat: Russia_Shamanka_EN.SG Ethiopia_4500BP.SG -1.570
  379.  
  380. ## end of run
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