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misnomer001

Ozera - Yam_Ukr + Maykop_Novos

misnomer001
Jan 5th, 2020
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  1. ### THE INPUT PARAMETERS
  2. ##PARAMETER NAME: VALUE
  3.  
  4. allsnps: YES
  5. ## qpAdm version: 810
  6. seed: 1872054309
  7.  
  8. left pops:
  9. Ukraine_Yamnaya_Ozera
  10. Ukraine_Yamnaya
  11. Caucasus_Maykop_Novosvobodnaya
  12.  
  13. right pops:
  14. Mbuti.DG
  15. Morocco_Iberomaurusian
  16. Ganj_Dareh_N
  17. PPN
  18. Anatolia_Meso
  19. Iberia_MN
  20. Russia_MA1.SG
  21. Georgia_Satsurblia.SG
  22. Kostenki14.SG
  23. Russia_Karelia_HG
  24. Serbia_Iron_Gates_HG
  25. Tyumen_HG
  26. Onge.DG
  27.  
  28. 0 Ukraine_Yamnaya_Ozera 1
  29. 1 Ukraine_Yamnaya 1
  30. 2 Caucasus_Maykop_Novosvobodnaya 4
  31. 3 Mbuti.DG 5
  32. 4 Morocco_Iberomaurusian 6
  33. 5 Ganj_Dareh_N 7
  34. 6 PPN 8
  35. 7 Anatolia_Meso 1
  36. 8 Iberia_MN 4
  37. 9 Russia_MA1.SG 1
  38. 10 Georgia_Satsurblia.SG 1
  39. 11 Kostenki14.SG 1
  40. 12 Russia_Karelia_HG 2
  41. 13 Serbia_Iron_Gates_HG 32
  42. 14 Tyumen_HG 2
  43. 15 Onge.DG 2
  44. jackknife block size: 0.050
  45. snps: 1150523 indivs: 78
  46. number of blocks for block jackknife: 552
  47. ## ncols: 1150523
  48. coverage: Ukraine_Yamnaya_Ozera 601867
  49. coverage: Ukraine_Yamnaya 801924
  50. coverage: Caucasus_Maykop_Novosvobodnaya 816853
  51. coverage: Mbuti.DG 1150376
  52. coverage: Morocco_Iberomaurusian 1101342
  53. coverage: Ganj_Dareh_N 1029695
  54. coverage: PPN 835499
  55. coverage: Anatolia_Meso 989345
  56. coverage: Iberia_MN 967760
  57. coverage: Russia_MA1.SG 805960
  58. coverage: Georgia_Satsurblia.SG 801311
  59. coverage: Kostenki14.SG 1048972
  60. coverage: Russia_Karelia_HG 1010733
  61. coverage: Serbia_Iron_Gates_HG 1139259
  62. coverage: Tyumen_HG 807474
  63. coverage: Onge.DG 1120748
  64. dof (jackknife): 460.335
  65. numsnps used: 1150523
  66. codimension 1
  67. f4info:
  68. f4rank: 1 dof: 11 chisq: 13.088 tail: 0.287596753 dofdiff: 13 chisqdiff: -13.088 taildiff: 1
  69. B:
  70. scale 1.000
  71. Morocco_Iberomaurusian 0.048
  72. Ganj_Dareh_N -0.451
  73. PPN -0.597
  74. Anatolia_Meso -0.502
  75. Iberia_MN -0.158
  76. Russia_MA1.SG 1.308
  77. Georgia_Satsurblia.SG -0.167
  78. Kostenki14.SG 0.399
  79. Russia_Karelia_HG 1.767
  80. Serbia_Iron_Gates_HG 1.378
  81. Tyumen_HG 2.004
  82. Onge.DG 0.476
  83. A:
  84. scale 741.908
  85. Ukraine_Yamnaya 0.740
  86. Caucasus_Maykop_Novosvobodnaya -1.205
  87.  
  88.  
  89. full rank
  90. f4info:
  91. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 13.088 taildiff: 0.287596753
  92. B:
  93. scale 1.000 1.000
  94. Morocco_Iberomaurusian 0.022 0.509
  95. Ganj_Dareh_N -0.458 -0.340
  96. PPN -0.619 0.016
  97. Anatolia_Meso -0.522 0.503
  98. Iberia_MN -0.187 -0.721
  99. Russia_MA1.SG 1.304 0.419
  100. Georgia_Satsurblia.SG -0.187 1.682
  101. Kostenki14.SG 0.401 -2.636
  102. Russia_Karelia_HG 1.786 0.738
  103. Serbia_Iron_Gates_HG 1.372 -0.193
  104. Tyumen_HG 1.973 0.319
  105. Onge.DG 0.489 0.464
  106. A:
  107. scale 746.326 3339.237
  108. Ukraine_Yamnaya 0.681 1.184
  109. Caucasus_Maykop_Novosvobodnaya -1.240 0.774
  110.  
  111.  
  112. best coefficients: 0.620 0.380
  113. Jackknife mean: 0.618721433 0.381278567
  114. std. errors: 0.047 0.047
  115.  
  116. error covariance (* 1000000)
  117. 2177 -2177
  118. -2177 2177
  119.  
  120.  
  121. summ: Ukraine_Yamnaya_Ozera 2 0.287597 0.619 0.381 2177 -2177 2177
  122.  
  123. fixed pat wt dof chisq tail prob
  124. 00 0 11 13.088 0.287597 0.620 0.380
  125. 01 1 12 61.935 9.99782e-09 1.000 -0.000
  126. 10 1 12 199.074 0 0.000 1.000
  127. best pat: 00 0.287597 - -
  128. best pat: 01 9.99782e-09 chi(nested): 48.847 p-value for nested model: 2.76799e-12
  129.  
  130. coeffs: 0.620 0.380
  131.  
  132. ## dscore:: f_4(Base, Fit, Rbase, right2)
  133. ## genstat:: f_4(Base, Fit, right1, right2)
  134.  
  135. details: Ukraine_Yamnaya Morocco_Iberomaurusian 0.000200 0.568184
  136. details: Caucasus_Maykop_Novosvobodnaya Morocco_Iberomaurusian 0.000081 0.283382
  137. dscore: Morocco_Iberomaurusian f4: 0.000154 Z: 0.533050
  138.  
  139. details: Ukraine_Yamnaya Ganj_Dareh_N -0.000520 -1.284791
  140. details: Caucasus_Maykop_Novosvobodnaya Ganj_Dareh_N 0.000687 2.019314
  141. dscore: Ganj_Dareh_N f4: -0.000061 Z: -0.180094
  142.  
  143. details: Ukraine_Yamnaya PPN -0.000554 -1.360971
  144. details: Caucasus_Maykop_Novosvobodnaya PPN 0.001031 3.009166
  145. dscore: PPN f4: 0.000049 Z: 0.143710
  146.  
  147. details: Ukraine_Yamnaya Anatolia_Meso -0.000286 -0.590715
  148. details: Caucasus_Maykop_Novosvobodnaya Anatolia_Meso 0.000985 2.499858
  149. dscore: Anatolia_Meso f4: 0.000198 Z: 0.491817
  150.  
  151. details: Ukraine_Yamnaya Iberia_MN -0.000405 -1.036822
  152. details: Caucasus_Maykop_Novosvobodnaya Iberia_MN 0.000156 0.485361
  153. dscore: Iberia_MN f4: -0.000192 Z: -0.589853
  154.  
  155. details: Ukraine_Yamnaya Russia_MA1.SG 0.001348 3.137704
  156. details: Caucasus_Maykop_Novosvobodnaya Russia_MA1.SG -0.002068 -5.498168
  157. dscore: Russia_MA1.SG f4: 0.000048 Z: 0.132262
  158.  
  159. details: Ukraine_Yamnaya Georgia_Satsurblia.SG 0.000440 1.068958
  160. details: Caucasus_Maykop_Novosvobodnaya Georgia_Satsurblia.SG 0.000710 1.894537
  161. dscore: Georgia_Satsurblia.SG f4: 0.000543 Z: 1.537397
  162.  
  163. details: Ukraine_Yamnaya Kostenki14.SG -0.000568 -1.296190
  164. details: Caucasus_Maykop_Novosvobodnaya Kostenki14.SG -0.001283 -3.464193
  165. dscore: Kostenki14.SG f4: -0.000840 Z: -2.302055
  166.  
  167. details: Ukraine_Yamnaya Russia_Karelia_HG 0.001903 3.856899
  168. details: Caucasus_Maykop_Novosvobodnaya Russia_Karelia_HG -0.002796 -6.712354
  169. dscore: Russia_Karelia_HG f4: 0.000115 Z: 0.274657
  170.  
  171. details: Ukraine_Yamnaya Serbia_Iron_Gates_HG 0.001191 2.935205
  172. details: Caucasus_Maykop_Novosvobodnaya Serbia_Iron_Gates_HG -0.002322 -7.084853
  173. dscore: Serbia_Iron_Gates_HG f4: -0.000145 Z: -0.429682
  174.  
  175. details: Ukraine_Yamnaya Tyumen_HG 0.001935 3.599969
  176. details: Caucasus_Maykop_Novosvobodnaya Tyumen_HG -0.003192 -7.105824
  177. dscore: Tyumen_HG f4: -0.000016 Z: -0.034598
  178.  
  179. details: Ukraine_Yamnaya Onge.DG 0.000624 1.528272
  180. details: Caucasus_Maykop_Novosvobodnaya Onge.DG -0.000704 -2.097836
  181. dscore: Onge.DG f4: 0.000119 Z: 0.349349
  182.  
  183. gendstat: Mbuti.DG Morocco_Iberomaurusian 0.533
  184. gendstat: Mbuti.DG Ganj_Dareh_N -0.180
  185. gendstat: Mbuti.DG PPN 0.144
  186. gendstat: Mbuti.DG Anatolia_Meso 0.492
  187. gendstat: Mbuti.DG Iberia_MN -0.590
  188. gendstat: Mbuti.DG Russia_MA1.SG 0.132
  189. gendstat: Mbuti.DG Georgia_Satsurblia.SG 1.537
  190. gendstat: Mbuti.DG Kostenki14.SG -2.302
  191. gendstat: Mbuti.DG Russia_Karelia_HG 0.275
  192. gendstat: Mbuti.DG Serbia_Iron_Gates_HG -0.430
  193. gendstat: Mbuti.DG Tyumen_HG -0.035
  194. gendstat: Mbuti.DG Onge.DG 0.349
  195. gendstat: Morocco_Iberomaurusian Ganj_Dareh_N -0.636
  196. gendstat: Morocco_Iberomaurusian PPN -0.324
  197. gendstat: Morocco_Iberomaurusian Anatolia_Meso 0.114
  198. gendstat: Morocco_Iberomaurusian Iberia_MN -1.069
  199. gendstat: Morocco_Iberomaurusian Russia_MA1.SG -0.263
  200. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG 0.994
  201. gendstat: Morocco_Iberomaurusian Kostenki14.SG -2.565
  202. gendstat: Morocco_Iberomaurusian Russia_Karelia_HG -0.091
  203. gendstat: Morocco_Iberomaurusian Serbia_Iron_Gates_HG -0.911
  204. gendstat: Morocco_Iberomaurusian Tyumen_HG -0.372
  205. gendstat: Morocco_Iberomaurusian Onge.DG -0.099
  206. gendstat: Ganj_Dareh_N PPN 0.310
  207. gendstat: Ganj_Dareh_N Anatolia_Meso 0.620
  208. gendstat: Ganj_Dareh_N Iberia_MN -0.395
  209. gendstat: Ganj_Dareh_N Russia_MA1.SG 0.270
  210. gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG 1.589
  211. gendstat: Ganj_Dareh_N Kostenki14.SG -1.960
  212. gendstat: Ganj_Dareh_N Russia_Karelia_HG 0.420
  213. gendstat: Ganj_Dareh_N Serbia_Iron_Gates_HG -0.246
  214. gendstat: Ganj_Dareh_N Tyumen_HG 0.104
  215. gendstat: Ganj_Dareh_N Onge.DG 0.486
  216. gendstat: PPN Anatolia_Meso 0.387
  217. gendstat: PPN Iberia_MN -0.808
  218. gendstat: PPN Russia_MA1.SG -0.002
  219. gendstat: PPN Georgia_Satsurblia.SG 1.250
  220. gendstat: PPN Kostenki14.SG -2.221
  221. gendstat: PPN Russia_Karelia_HG 0.147
  222. gendstat: PPN Serbia_Iron_Gates_HG -0.585
  223. gendstat: PPN Tyumen_HG -0.134
  224. gendstat: PPN Onge.DG 0.180
  225. gendstat: Anatolia_Meso Iberia_MN -1.054
  226. gendstat: Anatolia_Meso Russia_MA1.SG -0.316
  227. gendstat: Anatolia_Meso Georgia_Satsurblia.SG 0.755
  228. gendstat: Anatolia_Meso Kostenki14.SG -2.266
  229. gendstat: Anatolia_Meso Russia_Karelia_HG -0.165
  230. gendstat: Anatolia_Meso Serbia_Iron_Gates_HG -0.862
  231. gendstat: Anatolia_Meso Tyumen_HG -0.417
  232. gendstat: Anatolia_Meso Onge.DG -0.180
  233. gendstat: Iberia_MN Russia_MA1.SG 0.580
  234. gendstat: Iberia_MN Georgia_Satsurblia.SG 1.884
  235. gendstat: Iberia_MN Kostenki14.SG -1.651
  236. gendstat: Iberia_MN Russia_Karelia_HG 0.753
  237. gendstat: Iberia_MN Serbia_Iron_Gates_HG 0.167
  238. gendstat: Iberia_MN Tyumen_HG 0.391
  239. gendstat: Iberia_MN Onge.DG 0.847
  240. gendstat: Russia_MA1.SG Georgia_Satsurblia.SG 1.106
  241. gendstat: Russia_MA1.SG Kostenki14.SG -2.081
  242. gendstat: Russia_MA1.SG Russia_Karelia_HG 0.155
  243. gendstat: Russia_MA1.SG Serbia_Iron_Gates_HG -0.522
  244. gendstat: Russia_MA1.SG Tyumen_HG -0.143
  245. gendstat: Russia_MA1.SG Onge.DG 0.174
  246. gendstat: Georgia_Satsurblia.SG Kostenki14.SG -3.122
  247. gendstat: Georgia_Satsurblia.SG Russia_Karelia_HG -0.903
  248. gendstat: Georgia_Satsurblia.SG Serbia_Iron_Gates_HG -1.698
  249. gendstat: Georgia_Satsurblia.SG Tyumen_HG -1.160
  250. gendstat: Georgia_Satsurblia.SG Onge.DG -1.017
  251. gendstat: Kostenki14.SG Russia_Karelia_HG 2.160
  252. gendstat: Kostenki14.SG Serbia_Iron_Gates_HG 1.932
  253. gendstat: Kostenki14.SG Tyumen_HG 1.757
  254. gendstat: Kostenki14.SG Onge.DG 2.299
  255. gendstat: Russia_Karelia_HG Serbia_Iron_Gates_HG -0.757
  256. gendstat: Russia_Karelia_HG Tyumen_HG -0.299
  257. gendstat: Russia_Karelia_HG Onge.DG 0.009
  258. gendstat: Serbia_Iron_Gates_HG Tyumen_HG 0.322
  259. gendstat: Serbia_Iron_Gates_HG Onge.DG 0.742
  260. gendstat: Tyumen_HG Onge.DG 0.296
  261.  
  262. ## end of run
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