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  1. [1] "1. CLOSEST SINGLE ITEM DISTANCES"
  2. LBA_Armenia_RISE397 BA_Sydon BA_Hungary_BR2
  3. 25.40871 28.09782 28.42946
  4. MBA_Armenia_RISE423 Egyptian_mumy_I_JK2888_ Late_Medieval_Iran_I1955
  5. 28.66952 29.31523 29.37305
  6. BA_I9123_Crete_Armenoi EIA_F38_Iran
  7. 29.44086 30.50709
  8.  
  9.  
  10. [1] "2. FULL TABLE nMONTE"
  11. [1] "Ncycles= 1000"
  12. Amerindian Arabian Armenian Basque Central_African Central_Euro
  13. ashk 0.000000 3.770000 4.45000 3.28000 2.050000 0.960000
  14. fitted 0.122155 7.153975 5.12873 1.25913 0.258515 1.106525
  15. dif 0.122155 3.383975 0.67873 -2.02087 -1.791485 0.146525
  16. East_African East_Asian East_Balkan East_Central_Asian East_Central_Euro
  17. ashk 0.000 0 4.520000 0.00000 5.56000
  18. fitted 0.004 0 1.762135 0.12765 3.96427
  19. dif 0.004 0 -2.757865 0.12765 -1.59573
  20. East_Med Eastern_Euro Fennoscandian French Iberian Indo.Chinese
  21. ashk 13.0800 0.77000 1.590000 2.860000 12.060000 0
  22. fitted 12.4847 0.65958 2.445845 2.347285 10.041525 0
  23. dif -0.5953 -0.11042 0.855845 -0.512715 -2.018475 0
  24. Italian Malayan Near_Eastern North_African North_Atlantic
  25. ashk 12.550000 0 17.31000 1.24000 3.280000
  26. fitted 12.205985 0 12.96797 0.95924 3.500655
  27. dif -0.344015 0 -4.34203 -0.28076 0.220655
  28. North_Caucasian North_Sea Northeast_African Oceanian Omotic Pygmy
  29. ashk 8.00000 0.000000 0.25000 0.560000 0 0
  30. fitted 6.56602 1.471385 0.95324 0.030135 0 0
  31. dif -1.43398 1.471385 0.70324 -0.529865 0 0
  32. Siberian South_Asian South_Central_Asian South_Chinese Volga.Ural
  33. ashk 0.000000 0 1.32000 0 2.060000
  34. fitted 0.362195 0 1.44054 0 1.007175
  35. dif 0.362195 0 0.12054 0 -1.052825
  36. West_African West_Caucasian West.Med
  37. ashk 0.00000 0.65000 4.48000
  38. fitted 0.35436 2.68188 6.62793
  39. dif 0.35436 2.03188 2.14793
  40. [1] "distance%=8.3105 / distance=0.083105"
  41.  
  42. ashk
  43.  
  44. BA_Sydon 27.75
  45. BA_I9041_Mycenaean 14.15
  46. IA_Levant-Egypt_Gladiator_3DRIF26 8.90
  47. BA_Hungary_RISE371 7.45
  48. BA_Potapovka_I0246 7.45
  49. MBA_Armenia_RISE423 7.35
  50. BA_Portugal_Vale_Ouro 6.90
  51. EBA_Armenia_I1658 6.35
  52. MBA_ATP2_Iberia 5.60
  53. IA_EastKazachstan_Is2 5.35
  54. BA_Hungary_RISE254 1.95
  55. LBA_Lithuania_RISE598 0.80
  56. Aborigine_Australia 0.00
  57. Ameridnian_Chachapoya 0.00
  58. Amerindian_Clovis-Anzick1 0.00
  59. Amerindian_Kennewick 0.00
  60. Amerindian_Mikmaq_MARC1492 0.00
  61. Amerindian_Pericues 0.00
  62. BA_Afanasievo_511 0.00
  63. BA_Afanasievo_RISE507 0.00
  64. BA_Afanasievo_RISE509 0.00
  65. BA_Afanasievo_RISE510 0.00
  66. BA_Andronovo_ISE512_outlier 0.00
  67. BA_Andronovo_RISE500 0.00
  68. BA_Andronovo_RISE503 0.00
  69. BA_Andronovo_RISE505 0.00
  70. BA_Armenia_RISE407 0.00
  71. BA_Denmark_RISE47 0.00
  72. BA_Hungary_BR1 0.00
  73. BA_Hungary_BR2 0.00
  74. BA_Hungary_RISE247 0.00
  75. BA_Hungary_RISE349 0.00
  76. BA_Hungary_RISE373 0.00
  77. BA_Hungary_RISE374 0.00
  78. BA_Hungary_RISE479 0.00
  79. BA_Hungary_RISE480 0.00
  80. BA_Hungary_RISE483 0.00
  81. BA_Hungary_RISE484 0.00
  82. BA_I0070_Minoan 0.00
  83. BA_I0073_Minoan 0.00
  84. BA_I9006_Mycenean 0.00
  85. BA_I9010_Mycenaean 0.00
  86. BA_I9033_Mycenaean 0.00
  87. BA_I9123_Crete_Armenoi 0.00
  88. BA_Karasuk_RISE492 0.00
  89. BA_Karasuk_RISE493 0.00
  90. BA_Karasuk_RISE497 0.00
  91. BA_Karasuk_RISE499 0.00
  92. BA_Karasuk_RISE502 0.00
  93. BA_Levant_I0867 0.00
  94. BA_Mezhovskaya_RISE523 0.00
  95. BA_Mezhovskaya_RISE524 0.00
  96. BA_Mezhovskaya_RISE525 0.00
  97. BA_Okunevo_RISE515 0.00
  98. BA_Okunevo_RISE516 0.00
  99. BA_Poltavka_I0126 0.00
  100. BA_Poltavka_I0432_outlier 0.00
  101. BA_Poltavka_I0440 0.00
  102. BA_Portugal_ERR1524174 0.00
  103. BA_Portugal_MonteGato_104 0.00
  104. BA_Portugal_TorreVelha_32032 0.00
  105. BA_Portugal_TorreVelha_3831 0.00
  106. BA_Potapovka_I0419 0.00
  107. BA_Sintashta_RISE386_ 0.00
  108. BA_Sintashta_RISE391 0.00
  109. BA_Sintashta_RISE394 0.00
  110. BA_Sintashta_RISE395 0.00
  111. BA_Srubnaya_I0232 0.00
  112. BA_Srubnaya_I0234 0.00
  113. BA_Srubnaya_I0235 0.00
  114. BA_Srubnaya_I0354_outlier 0.00
  115. BA_Srubnaya_I0358 0.00
  116. BA_Srubnaya_I0359 0.00
  117. BA_Srubnaya_I0423 0.00
  118. BA_Srubnaya_I0430 0.00
  119. BA_Sweden__RISE175 0.00
  120. BA_Sweden_RISE207 0.00
  121. BA_Unetice__Germany_I0116 0.00
  122. BA_Unetice_Czechia_RISE577 0.00
  123. BA_Unetice_Germany__I0115 0.00
  124. BA_Unetice_Germany_I0047 0.00
  125. BA_Unetice_Germany_I0114 0.00
  126. BA_Unetice_Germany_I0117 0.00
  127. BA_Unetice_Germany_I0164 0.00
  128. BA_Unetice_Germany_I0803 0.00
  129. BA_Unetice_LNBA_Czech_RISE586 0.00
  130. BA_Unetice_Poland_RISE109 0.00
  131. BA_Unetice_Poland_RISE139 0.00
  132. BA_Unetice_Poland_RISE150 0.00
  133. BA_Unetice_Poland_RISE154 0.00
  134. EBA__Armenia_I1635 0.00
  135. EBA_Anatolia_Kum4 0.00
  136. EBA_Armenia_I1633 0.00
  137. EBA_Russia_RISE555 0.00
  138. EBA_Jordan__I1705 0.00
  139. EBA_Jordan__I1730 0.00
  140. EBA_Poland_N17 0.00
  141. EBA_Poland_RISE431 0.00
  142. Egyptian_mummy_II_JK2134_ 0.00
  143. Egyptian_mummy_III_jk2911_ 0.00
  144. Egyptian_mumy_I_JK2888_ 0.00
  145. EIA_F38_Iran 0.00
  146. EMA_Anglosaxon_NO3423 0.00
  147. EMA_Czech_Slav_RISE568 0.00
  148. EMA_Czech_Slav_RISE569 0.00
  149. EMA_Hinxton2_Anglosaxon 0.00
  150. EMA_Hinxton3_Anglosaxon 0.00
  151. EMA_Hinxton5_Anglosaxon 0.00
  152. EMA_Poland_Slav_Niemcza_34 0.00
  153. EMA_Sweden_RISE174 0.00
  154. Eskimo_4ky 0.00
  155. HG_Ethiopia_Mota1 0.00
  156. IA_Altai_RISE600 0.00
  157. IA_AltaI_RISE601 0.00
  158. IA_Altai_RISE602 0.00
  159. IA_Britain_York_3DRIF16 0.00
  160. IA_Britain_York_6DRIF18 0.00
  161. IA_Britain_York_6DRIF21 0.00
  162. IA_Britain_York_6DRIF23 0.00
  163. IA_Britain_York_6DRIF3 0.00
  164. IA_Britainr_York_6DRIF22 0.00
  165. IA_Celtic_Britain_Hinxton1 0.00
  166. IA_EastKazachstan_Ze6 0.00
  167. IA_Hinxton4_Celtic_/_Roman 0.00
  168. IA_Hungary_IR1 0.00
  169. IA_Kytmanovo_RISE504 0.00
  170. IA_Pazyryk_Be11_I0563 0.00
  171. IA_Pazyryk_Be9_I05622 0.00
  172. IA_Sarmatian_PR3_I0575__Pokrovka 0.00
  173. IA_Sarmatian_PR9_I0574_Pokrovka 0.00
  174. IA_Scythian_I0247a 0.00
  175. IA_Scythian_I0247b 0.00
  176. IA_Tuva_A10_I0577 0.00
  177. IA_Tuva_A17_I0576 0.00
  178. IA_Wielbark_Kow_22_PL 0.00
  179. IA_Wielbark_Kow_25_PL 0.00
  180. IA_Wielbark_Kow_26_PL 0.00
  181. IA_Wielbark_Kow_45_PL 0.00
  182. IA_Wielbark_Kow_55_PL 0.00
  183. IA_Wielbark_Mas_5_PL 0.00
  184. Lapita_Tonga_CP_30 0.00
  185. Lapita_Vanuatu_Il_369 0.00
  186. Lapita_Vanuatu_Il_370 0.00
  187. Late_Medieval_Iran_I1955 0.00
  188. LBA_Afontova_Gora_RISE554 0.00
  189. LBA_Armenia_RISE396 0.00
  190. LBA_Armenia_RISE397 0.00
  191. LBA_Armenia_RISE408 0.00
  192. LBA_Armenia_RISE412 0.00
  193. LBA_Denmark_RISE276 0.00
  194. LNBA_Urnfield_Germany_I0099 0.00
  195. MBA_Armenia_RISE413 0.00
  196. MBA_Armenia_RISE416 0.00
  197. MBA_ATP9_Iberia 0.00
  198. MBA_Germany__RISE471 0.00
  199. MBA_Ireland_Rathlin 0.00
  200. MLBA_ArmeniaI1656 0.00
  201. Mesolithic_East-Asian_MOS_5_Devil's_Gate 0.00
  202.  
  203.  
  204.  
  205. [1] "3. RESTRICTED nMONTE"
  206. [1] "Ncycles= 1000"
  207. Amerindian Arabian Armenian Basque Central_African Central_Euro
  208. ashk 0.00000 3.770000 4.450000 3.28000 2.05000 0.960000
  209. fitted 0.12614 7.173585 5.180955 1.26655 0.26372 1.126115
  210. dif 0.12614 3.403585 0.730955 -2.01345 -1.78628 0.166115
  211. East_African East_Asian East_Balkan East_Central_Asian East_Central_Euro
  212. ashk 0 0 4.5200 0.00000 5.56000
  213. fitted 0 0 1.7556 0.12696 3.88065
  214. dif 0 0 -2.7644 0.12696 -1.67935
  215. East_Med Eastern_Euro Fennoscandian French Iberian Indo.Chinese
  216. ashk 13.08000 0.77000 1.59000 2.86000 12.06000 0
  217. fitted 12.46763 0.50899 2.47132 2.41205 10.05019 0
  218. dif -0.61237 -0.26101 0.88132 -0.44795 -2.00981 0
  219. Italian Malayan Near_Eastern North_African North_Atlantic North_Caucasian
  220. ashk 12.55000 0 17.310000 1.24000 3.28000 8.000000
  221. fitted 12.21666 0 12.972285 0.97188 3.53709 6.574795
  222. dif -0.33334 0 -4.337715 -0.26812 0.25709 -1.425205
  223. North_Sea Northeast_African Oceanian Omotic Pygmy Siberian South_Asian
  224. ashk 0.00000 0.250000 0.56000 0 0 0.00000 0
  225. fitted 1.41214 0.964215 0.03034 0 0 0.35881 0
  226. dif 1.41214 0.714215 -0.52966 0 0 0.35881 0
  227. South_Central_Asian South_Chinese Volga.Ural West_African West_Caucasian
  228. ashk 1.32000 0 2.060000 0.00000 0.65000
  229. fitted 1.47469 0 1.002495 0.43511 2.63478
  230. dif 0.15469 0 -1.057505 0.43511 1.98478
  231. West.Med
  232. ashk 4.48000
  233. fitted 6.59888
  234. dif 2.11888
  235. [1] "distance%=8.3136 / distance=0.083136"
  236.  
  237. ashk
  238.  
  239. BA_Sydon 27.60
  240. BA_I9041_Mycenaean 14.20
  241. IA_Levant-Egypt_Gladiator_3DRIF26 9.15
  242. BA_Potapovka_I0246 7.95
  243. BA_Hungary_RISE371 7.60
  244. MBA_Armenia_RISE423 7.40
  245. BA_Portugal_Vale_Ouro 6.20
  246. EBA_Armenia_I1658 6.00
  247. MBA_ATP2_Iberia 5.55
  248. IA_EastKazachstan_Is2 5.30
  249. BA_Hungary_RISE254 3.05
  250.  
  251.  
  252. [1] "CORRELATION OF ADMIXTURE POPULATIONS"
  253. BA_Hungary_RISE254 BA_Hungary_RISE371
  254. BA_Hungary_RISE254 1.00 0.16
  255. BA_Hungary_RISE371 0.16 1.00
  256. BA_I9041_Mycenaean 0.23 0.43
  257. BA_Portugal_Vale_Ouro 0.84 0.06
  258. BA_Potapovka_I0246 0.05 0.11
  259. BA_Sydon -0.08 -0.02
  260. EBA_Armenia_I1658 -0.09 -0.04
  261. IA_Levant-Egypt_Gladiator_3DRIF26 -0.09 -0.12
  262. IA_EastKazachstan_Is2 0.37 0.11
  263. MBA_Armenia_RISE423 -0.06 -0.11
  264. MBA_ATP2_Iberia 0.76 0.13
  265. BA_I9041_Mycenaean BA_Portugal_Vale_Ouro
  266. BA_Hungary_RISE254 0.23 0.84
  267. BA_Hungary_RISE371 0.43 0.06
  268. BA_I9041_Mycenaean 1.00 0.29
  269. BA_Portugal_Vale_Ouro 0.29 1.00
  270. BA_Potapovka_I0246 -0.15 -0.05
  271. BA_Sydon 0.39 -0.07
  272. EBA_Armenia_I1658 0.26 -0.12
  273. IA_Levant-Egypt_Gladiator_3DRIF26 0.23 -0.07
  274. IA_EastKazachstan_Is2 0.01 0.49
  275. MBA_Armenia_RISE423 0.05 -0.14
  276. MBA_ATP2_Iberia 0.56 0.90
  277. BA_Potapovka_I0246 BA_Sydon EBA_Armenia_I1658
  278. BA_Hungary_RISE254 0.05 -0.08 -0.09
  279. BA_Hungary_RISE371 0.11 -0.02 -0.04
  280. BA_I9041_Mycenaean -0.15 0.39 0.26
  281. BA_Portugal_Vale_Ouro -0.05 -0.07 -0.12
  282. BA_Potapovka_I0246 1.00 -0.16 0.37
  283. BA_Sydon -0.16 1.00 0.36
  284. EBA_Armenia_I1658 0.37 0.36 1.00
  285. IA_Levant-Egypt_Gladiator_3DRIF26 -0.17 0.97 0.31
  286. IA_EastKazachstan_Is2 0.29 -0.21 0.10
  287. MBA_Armenia_RISE423 0.44 0.36 0.85
  288. MBA_ATP2_Iberia -0.11 0.02 -0.06
  289. IA_Levant-Egypt_Gladiator_3DRIF26
  290. BA_Hungary_RISE254 -0.09
  291. BA_Hungary_RISE371 -0.12
  292. BA_I9041_Mycenaean 0.23
  293. BA_Portugal_Vale_Ouro -0.07
  294. BA_Potapovka_I0246 -0.17
  295. BA_Sydon 0.97
  296. EBA_Armenia_I1658 0.31
  297. IA_Levant-Egypt_Gladiator_3DRIF26 1.00
  298. IA_EastKazachstan_Is2 -0.21
  299. MBA_Armenia_RISE423 0.35
  300. MBA_ATP2_Iberia -0.05
  301. IA_EastKazachstan_Is2 MBA_Armenia_RISE423
  302. BA_Hungary_RISE254 0.37 -0.06
  303. BA_Hungary_RISE371 0.11 -0.11
  304. BA_I9041_Mycenaean 0.01 0.05
  305. BA_Portugal_Vale_Ouro 0.49 -0.14
  306. BA_Potapovka_I0246 0.29 0.44
  307. BA_Sydon -0.21 0.36
  308. EBA_Armenia_I1658 0.10 0.85
  309. IA_Levant-Egypt_Gladiator_3DRIF26 -0.21 0.35
  310. IA_EastKazachstan_Is2 1.00 0.12
  311. MBA_Armenia_RISE423 0.12 1.00
  312. MBA_ATP2_Iberia 0.39 -0.13
  313. MBA_ATP2_Iberia
  314. BA_Hungary_RISE254 0.76
  315. BA_Hungary_RISE371 0.13
  316. BA_I9041_Mycenaean 0.56
  317. BA_Portugal_Vale_Ouro 0.90
  318. BA_Potapovka_I0246 -0.11
  319. BA_Sydon 0.02
  320. EBA_Armenia_I1658 -0.06
  321. IA_Levant-Egypt_Gladiator_3DRIF26 -0.05
  322. IA_EastKazachstan_Is2 0.39
  323. MBA_Armenia_RISE423 -0.13
  324. MBA_ATP2_Iberia 1.00
  325. Warning message:
  326. In read.table(file = file, header = header, sep = sep, quote = quote, :
  327. incomplete final line found by readTableHeader on 'M288430.csv'
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