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misnomer001

megiddo outlier dzhaylau

misnomer001
Jun 1st, 2020
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  1. ALLSNPS: YES
  2. ## qpAdm version: 1000
  3. seed: 1637104386
  4. read 1073741824 bytes
  5. read 2147483648 bytes
  6. read 2202161218 bytes
  7. packed geno read OK
  8. end of inpack
  9.  
  10. left pops:
  11. Megiddo_MLBA_outlierfamily
  12. Megiddo_MLBA
  13. Kazakhstan_MLBA_OyDzhaylau
  14. Uzbekistan_BA_SappaliTepe
  15.  
  16. right pops:
  17. Cameroon_SMA.DG
  18. EEHG
  19. WSHG
  20. PPN
  21. WEHG
  22. Anatolia_N
  23. Iran_GanjDareh_N
  24. Russia_UstBelaya_Angara
  25. ONG.SG
  26. Botai
  27. Russia_Steppe_Catacomb
  28.  
  29. 0 Megiddo_MLBA_outlierfamily 2
  30. 1 Megiddo_MLBA 22
  31. 2 Kazakhstan_MLBA_OyDzhaylau 6
  32. 3 Uzbekistan_BA_SappaliTepe 11
  33. 4 Cameroon_SMA.DG 1
  34. 5 EEHG 5
  35. 6 WSHG 3
  36. 7 PPN 11
  37. 8 WEHG 33
  38. 9 Anatolia_N 22
  39. 10 Iran_GanjDareh_N 8
  40. 11 Russia_UstBelaya_Angara 8
  41. 12 ONG.SG 6
  42. 13 Botai 2
  43. 14 Russia_Steppe_Catacomb 4
  44. jackknife block size: 0.050
  45. snps: 1150506 indivs: 144
  46. number of blocks for block jackknife: 713
  47. ## ncols: 1150506
  48. coverage: Megiddo_MLBA_outlierfamily 625041
  49. coverage: Megiddo_MLBA 989505
  50. coverage: Kazakhstan_MLBA_OyDzhaylau 999558
  51. coverage: Uzbekistan_BA_SappaliTepe 1119341
  52. coverage: Cameroon_SMA.DG 1140138
  53. coverage: EEHG 1052093
  54. coverage: WSHG 858019
  55. coverage: PPN 847771
  56. coverage: WEHG 1140599
  57. coverage: Anatolia_N 1139031
  58. coverage: Iran_GanjDareh_N 1057358
  59. coverage: Russia_UstBelaya_Angara 1072574
  60. coverage: ONG.SG 1143397
  61. coverage: Botai 926654
  62. coverage: Russia_Steppe_Catacomb 863785
  63. dof (jackknife): 635.361
  64. numsnps used: 551019
  65. codimension 1
  66. f4info:
  67. f4rank: 2 dof: 8 chisq: 11.060 tail: 0.198345993 dofdiff: 10 chisqdiff: -11.060 taildiff: 1
  68. B:
  69. scale 1.000 1.000
  70. EEHG 1.536 0.133
  71. WSHG 1.492 -0.272
  72. PPN -0.393 2.039
  73. WEHG 1.297 0.992
  74. Anatolia_N -0.079 1.620
  75. Iran_GanjDareh_N -0.235 -1.332
  76. Russia_UstBelaya_Angara 0.798 -0.275
  77. ONG.SG 0.376 -0.303
  78. Botai 1.385 -0.409
  79. Russia_Steppe_Catacomb 0.906 0.187
  80. A:
  81. scale 483.604 902.193
  82. Megiddo_MLBA -0.605 0.299
  83. Kazakhstan_MLBA_OyDzhaylau 1.591 -0.161
  84. Uzbekistan_BA_SappaliTepe -0.318 -1.698
  85.  
  86.  
  87. full rank
  88. f4info:
  89. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 8 chisqdiff: 11.060 taildiff: 0.198345993
  90. B:
  91. scale 780.896 296.664 500.329
  92. EEHG -1.277 1.575 -0.527
  93. WSHG -1.460 1.513 -0.201
  94. PPN 0.901 -0.483 -1.795
  95. WEHG -1.048 1.208 -1.384
  96. Anatolia_N 0.479 -0.161 -1.515
  97. Iran_GanjDareh_N -0.184 -0.165 1.279
  98. Russia_UstBelaya_Angara -0.810 0.823 0.023
  99. ONG.SG -0.383 0.417 0.203
  100. Botai -1.267 1.461 0.042
  101. Russia_Steppe_Catacomb -1.288 0.706 -0.756
  102. A:
  103. scale 1.732 1.732 1.732
  104. Megiddo_MLBA 1.732 0.000 0.000
  105. Kazakhstan_MLBA_OyDzhaylau 0.000 1.732 0.000
  106. Uzbekistan_BA_SappaliTepe 0.000 0.000 1.732
  107.  
  108.  
  109. best coefficients: 0.647 0.264 0.089
  110. Jackknife mean: 0.647007617 0.263735443 0.089256940
  111. std. errors: 0.036 0.028 0.038
  112.  
  113. error covariance (* 1,000,000)
  114. 1262 -298 -965
  115. -298 762 -465
  116. -965 -465 1429
  117.  
  118.  
  119. summ: Megiddo_MLBA_outlierfamily 3 0.198346 0.647 0.264 0.089 1262 -298 -965 762 -465 ...
  120. 1429
  121.  
  122. fixed pat wt dof chisq tail prob
  123. 000 0 8 11.060 0.198346 0.647 0.264 0.089
  124. 001 1 9 17.735 0.0383752 0.709 0.291 0.000
  125. 010 1 9 99.714 1.79729e-17 0.750 0.000 0.250
  126. 100 1 9 321.448 0 0.000 0.416 0.584
  127. 011 2 10 143.987 6.41212e-26 1.000 0.000 0.000
  128. 101 2 10 622.619 0 0.000 1.000 0.000
  129. 110 2 10 505.105 0 0.000 0.000 1.000
  130. best pat: 000 0.198346 - -
  131. best pat: 001 0.0383752 chi(nested): 6.675 p-value for nested model: 0.00977505
  132. best pat: 011 6.41212e-26 chi(nested): 126.252 p-value for nested model: 2.7079e-29
  133.  
  134. coeffs: 0.647 0.264 0.089
  135.  
  136. ## dscore:: f_4(Base, Fit, Rbase, right2)
  137. ## genstat:: f_4(Base, Fit, right1, right2)
  138.  
  139. details: Megiddo_MLBA EEHG -0.001635 -4.408279
  140. details: Kazakhstan_MLBA_OyDzhaylau EEHG 0.005310 13.071970
  141. details: Uzbekistan_BA_SappaliTepe EEHG -0.001053 -2.744605
  142. dscore: EEHG f4: 0.000249 Z: 0.688972
  143.  
  144. details: Megiddo_MLBA WSHG -0.001869 -4.766686
  145. details: Kazakhstan_MLBA_OyDzhaylau WSHG 0.005099 11.584166
  146. details: Uzbekistan_BA_SappaliTepe WSHG -0.000402 -0.983658
  147. dscore: WSHG f4: 0.000100 Z: 0.258709
  148.  
  149. details: Megiddo_MLBA PPN 0.001154 3.229222
  150. details: Kazakhstan_MLBA_OyDzhaylau PPN -0.001628 -4.190117
  151. details: Uzbekistan_BA_SappaliTepe PPN -0.003588 -9.856315
  152. dscore: PPN f4: -0.000002 Z: -0.005872
  153.  
  154. details: Megiddo_MLBA WEHG -0.001342 -4.115893
  155. details: Kazakhstan_MLBA_OyDzhaylau WEHG 0.004073 10.748188
  156. details: Uzbekistan_BA_SappaliTepe WEHG -0.002765 -8.082438
  157. dscore: WEHG f4: -0.000040 Z: -0.122605
  158.  
  159. details: Megiddo_MLBA Anatolia_N 0.000614 1.998202
  160. details: Kazakhstan_MLBA_OyDzhaylau Anatolia_N -0.000544 -1.594948
  161. details: Uzbekistan_BA_SappaliTepe Anatolia_N -0.003028 -9.739832
  162. dscore: Anatolia_N f4: -0.000016 Z: -0.052642
  163.  
  164. details: Megiddo_MLBA Iran_GanjDareh_N -0.000236 -0.725858
  165. details: Kazakhstan_MLBA_OyDzhaylau Iran_GanjDareh_N -0.000556 -1.548822
  166. details: Uzbekistan_BA_SappaliTepe Iran_GanjDareh_N 0.002556 7.547012
  167. dscore: Iran_GanjDareh_N f4: -0.000072 Z: -0.226333
  168.  
  169. details: Megiddo_MLBA Russia_UstBelaya_Angara -0.001037 -3.121684
  170. details: Kazakhstan_MLBA_OyDzhaylau Russia_UstBelaya_Angara 0.002773 7.320084
  171. details: Uzbekistan_BA_SappaliTepe Russia_UstBelaya_Angara 0.000047 0.132645
  172. dscore: Russia_UstBelaya_Angara f4: 0.000065 Z: 0.197153
  173.  
  174. details: Megiddo_MLBA ONG.SG -0.000490 -1.493248
  175. details: Kazakhstan_MLBA_OyDzhaylau ONG.SG 0.001407 3.746613
  176. details: Uzbekistan_BA_SappaliTepe ONG.SG 0.000406 1.138649
  177. dscore: ONG.SG f4: 0.000090 Z: 0.275691
  178.  
  179. details: Megiddo_MLBA Botai -0.001622 -4.205024
  180. details: Kazakhstan_MLBA_OyDzhaylau Botai 0.004925 11.582463
  181. details: Uzbekistan_BA_SappaliTepe Botai 0.000085 0.210757
  182. dscore: Botai f4: 0.000258 Z: 0.683648
  183.  
  184. details: Megiddo_MLBA Russia_Steppe_Catacomb -0.001649 -4.845547
  185. details: Kazakhstan_MLBA_OyDzhaylau Russia_Steppe_Catacomb 0.002381 6.300836
  186. details: Uzbekistan_BA_SappaliTepe Russia_Steppe_Catacomb -0.001510 -4.337478
  187. dscore: Russia_Steppe_Catacomb f4: -0.000573 Z: -1.723913
  188.  
  189. gendstat: Cameroon_SMA.DG EEHG 0.689
  190. gendstat: Cameroon_SMA.DG WSHG 0.259
  191. gendstat: Cameroon_SMA.DG PPN -0.006
  192. gendstat: Cameroon_SMA.DG WEHG -0.123
  193. gendstat: Cameroon_SMA.DG Anatolia_N -0.053
  194. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N -0.226
  195. gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara 0.197
  196. gendstat: Cameroon_SMA.DG ONG.SG 0.276
  197. gendstat: Cameroon_SMA.DG Botai 0.684
  198. gendstat: Cameroon_SMA.DG Russia_Steppe_Catacomb -1.724
  199. gendstat: EEHG WSHG -0.486
  200. gendstat: EEHG PPN -0.750
  201. gendstat: EEHG WEHG -1.145
  202. gendstat: EEHG Anatolia_N -0.962
  203. gendstat: EEHG Iran_GanjDareh_N -0.991
  204. gendstat: EEHG Russia_UstBelaya_Angara -0.649
  205. gendstat: EEHG ONG.SG -0.493
  206. gendstat: EEHG Botai 0.027
  207. gendstat: EEHG Russia_Steppe_Catacomb -2.891
  208. gendstat: WSHG PPN -0.268
  209. gendstat: WSHG WEHG -0.462
  210. gendstat: WSHG Anatolia_N -0.342
  211. gendstat: WSHG Iran_GanjDareh_N -0.492
  212. gendstat: WSHG Russia_UstBelaya_Angara -0.117
  213. gendstat: WSHG ONG.SG -0.030
  214. gendstat: WSHG Botai 0.527
  215. gendstat: WSHG Russia_Steppe_Catacomb -2.011
  216. gendstat: PPN WEHG -0.135
  217. gendstat: PPN Anatolia_N -0.060
  218. gendstat: PPN Iran_GanjDareh_N -0.219
  219. gendstat: PPN Russia_UstBelaya_Angara 0.212
  220. gendstat: PPN ONG.SG 0.279
  221. gendstat: PPN Botai 0.718
  222. gendstat: PPN Russia_Steppe_Catacomb -1.770
  223. gendstat: WEHG Anatolia_N 0.111
  224. gendstat: WEHG Iran_GanjDareh_N -0.112
  225. gendstat: WEHG Russia_UstBelaya_Angara 0.396
  226. gendstat: WEHG ONG.SG 0.448
  227. gendstat: WEHG Botai 0.979
  228. gendstat: WEHG Russia_Steppe_Catacomb -2.077
  229. gendstat: Anatolia_N Iran_GanjDareh_N -0.218
  230. gendstat: Anatolia_N Russia_UstBelaya_Angara 0.303
  231. gendstat: Anatolia_N ONG.SG 0.376
  232. gendstat: Anatolia_N Botai 0.820
  233. gendstat: Anatolia_N Russia_Steppe_Catacomb -2.271
  234. gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara 0.493
  235. gendstat: Iran_GanjDareh_N ONG.SG 0.568
  236. gendstat: Iran_GanjDareh_N Botai 0.968
  237. gendstat: Iran_GanjDareh_N Russia_Steppe_Catacomb -1.769
  238. gendstat: Russia_UstBelaya_Angara ONG.SG 0.101
  239. gendstat: Russia_UstBelaya_Angara Botai 0.685
  240. gendstat: Russia_UstBelaya_Angara Russia_Steppe_Catacomb -2.243
  241. gendstat: ONG.SG Botai 0.505
  242. gendstat: ONG.SG Russia_Steppe_Catacomb -2.154
  243. gendstat: Botai Russia_Steppe_Catacomb -2.470
  244.  
  245. ##end of qpAdm: 383.551 seconds cpu 1294.561 Mbytes in use
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