Log

[leonid@archlinux ~]$ gmsh temp.geo -3
Info    : Running 'gmsh temp.geo -3' [Gmsh 3.0.6, 1 node, max. 1 thread]
Info    : Started on Tue Dec 12 14:06:57 2017
Info    : Reading 'temp.geo'...
Info    : Done reading 'temp.geo'
Info    : Finalized high order topology of periodic connections
Info    : Meshing 1D...
Info    : Meshing curve 1 (Line)
Info    : Meshing curve 2 (Line)
Info    : Meshing curve 3 (Line)
Info    : Meshing curve 4 (Line)
Info    : Meshing curve 5 (Line)
Info    : Meshing curve 6 (Line)
Info    : Meshing curve 7 (Line)
Info    : Meshing curve 8 (Line)
Info    : Meshing curve 9 (Line)
Info    : Meshing curve 10 (Line)
Info    : Meshing curve 11 (Line)
Info    : Meshing curve 12 (Line)
Info    : Meshing curve 13 (Line)
Info    : Meshing curve 14 (Circle)
Info    : Meshing curve 16 (Line)
Info    : Meshing curve 17 (Line)
Info    : Meshing curve 18 (Line)
Info    : Meshing curve 69 (Line)
Info    : Meshing curve 70 (Line)
Info    : Meshing curve 71 (Line)
Info    : Meshing curve 72 (Line)
Info    : Meshing curve 73 (Line)
Info    : Meshing curve 74 (Line)
Info    : Meshing curve 75 (Line)
Info    : Meshing curve 76 (Line)
Info    : Meshing curve 77 (Line)
Info    : Meshing curve 78 (Line)
Info    : Meshing curve 79 (Line)
Info    : Meshing curve 80 (Line)
Info    : Meshing curve 81 (Line)
Info    : Meshing curve 82 (Line)
Info    : Meshing curve 83 (Line)
Info    : Meshing curve 84 (Line)
Info    : Meshing curve 85 (Line)
Info    : Meshing curve 86 (Line)
Info    : Meshing curve 87 (Line)
Info    : Meshing curve 88 (Line)
Info    : Meshing curve 89 (Line)
Info    : Meshing curve 90 (Line)
Info    : Meshing curve 91 (Line)
Info    : Meshing curve 92 (Line)
Info    : Meshing curve 93 (Circle)
Info    : Meshing curve 94 (Line)
Info    : Meshing curve 95 (Circle)
Info    : Meshing curve 96 (Line)
Info    : Meshing curve 97 (Line)
Info    : Meshing curve 98 (Line)
Info    : Meshing curve 99 (Line)
Info    : Meshing curve 100 (Line)
Info    : Meshing curve 101 (Line)
Info    : Meshing curve 102 (Circle)
Info    : Meshing curve 103 (Circle)
Info    : Meshing curve 104 (Line)
Info    : Meshing curve 105 (Line)
Info    : Meshing curve 106 (Line)
Info    : Meshing curve 107 (Line)
Info    : Meshing curve 108 (Line)
Info    : Meshing curve 109 (Line)
Info    : Meshing curve 110 (Line)
Info    : Meshing curve 111 (Line)
Info    : Meshing curve 112 (Line)
Info    : Meshing curve 113 (Line)
Info    : Meshing curve 114 (Line)
Info    : Meshing curve 115 (Line)
Info    : Done meshing 1D (0.008446 s)
Info    : Meshing 2D...
Info    : Meshing surface 1 (Plane, Delaunay)
Info    : Meshing surface 2 (Plane, Delaunay)
Info    : Meshing surface 3 (Plane, Delaunay)
Info    : Meshing surface 4 (Plane, Delaunay)
Info    : Meshing surface 5 (Plane, Delaunay)
Info    : Meshing surface 6 (Plane, Delaunay)
Info    : Meshing surface 7 (Plane, Delaunay)
Info    : Meshing surface 8 (Plane, Delaunay)
Info    : Meshing surface 9 (Plane, Delaunay)
Info    : Meshing surface 10 (Plane, Delaunay)
Info    : Meshing surface 11 (Plane, Delaunay)
Info    : Meshing surface 12 (Plane, Delaunay)
Info    : Meshing surface 13 (Cylinder, MeshAdapt)
Info    : Meshing surface 14 (Plane, Delaunay)
Info    : Meshing surface 15 (Plane, Delaunay)
Info    : Meshing surface 16 (Plane, Delaunay)
Info    : Meshing surface 17 (Plane, Delaunay)
Info    : Meshing surface 18 (Plane, Delaunay)
Info    : Meshing surface 19 (Cylinder, MeshAdapt)
Info    : Meshing surface 20 (Plane, Delaunay)
Info    : Meshing surface 21 (Plane, Delaunay)
Info    : Meshing surface 22 (Plane, Delaunay)
Info    : Meshing surface 23 (Plane, Delaunay)
Info    : Meshing surface 24 (Plane, Delaunay)
Info    : Meshing surface 25 (Plane, Delaunay)
Info    : Done meshing 2D (0.327834 s)
Info    : Meshing 3D...
Info    : Delaunay Meshing 1 volumes with 1 connected components
Info    : Meshing volume 1 (Delaunay)
Delaunizing vertices...
Delaunay seconds:  0.004976
Creating surface mesh ...
Surface mesh seconds:  0.001163
Recovering boundaries...
PLC Error:  A segment and a facet intersect at point (8.71665,2.75667,2.25667).
  Segment: [334,73] #-1 (19)
  Facet:   [453,74,443] #19
Error   : Self intersecting surface mesh, computing intersections (this could take a while)
  Initializing memorypools.
  tetrahedron per block: 8188.
  Size of a point: 128 bytes.
  Size of a tetrahedron: 96 (96) bytes.
  Size of a shellface: 200 (200) bytes.
  Initializing robust predicates.
  sizeof(double) =  8
  machine epsilon =   2.22045e-16 [IEEE 754 64-bit macheps]
Delaunizing vertices...
  Permuting vertices.
  Sorting vertices.
  Incrementally inserting vertices.
Delaunay seconds:  0.004597
  Point sorting seconds:  5.4e-05
Creating surface mesh ...
  912 (2736) subfaces (segments).
Surface mesh seconds:  0.00028
Detecting self-intersecting facets...
  Facet #19 intersects facet #19 at triangles:
    ( 333,   74,   73) and ( 335,   73,  331)
  Facet #19 intersects facet #19 at triangles:
    ( 334,   73,   74) and ( 453,   74,  443)
  Facet #19 intersects facet #19 at triangles:
    ( 331,   73,  334) and ( 453,   74,  443)
  Facet #19 intersects facet #19 at triangles:
    ( 331,   73,  334) and ( 443,   74,  333)
  Facet #19 intersects facet #19 at triangles:
    ( 335,   73,  331) and ( 443,   74,  333)
  Facet #19 intersects facet #19 at triangles:
    (  75,   74,  330) and ( 331,   75,  335)
  Facet #19 intersects facet #19 at triangles:
    (  74,   75,  334) and ( 451,   74,  454)
  Facet #19 intersects facet #19 at triangles:
    ( 451,   74,  454) and ( 334,   75,  331)
  Facet #19 intersects facet #19 at triangles:
    ( 330,   74,  451) and ( 334,   75,  331)
  Facet #19 intersects facet #19 at triangles:
    ( 330,   74,  451) and ( 331,   75,  335)
  Facet #19 intersects facet #19 at triangles:
    ( 333,   74,   73) and ( 335,   73,  331)
  Facet #19 intersects facet #19 at triangles:
    ( 334,   73,   74) and ( 453,   74,  443)
  Facet #19 intersects facet #19 at triangles:
    ( 331,   73,  334) and ( 453,   74,  443)
  Facet #19 intersects facet #19 at triangles:
    ( 331,   73,  334) and ( 443,   74,  333)
  Facet #19 intersects facet #19 at triangles:
    ( 335,   73,  331) and ( 443,   74,  333)
  Facet #19 intersects facet #19 at triangles:
    (  75,   74,  330) and ( 331,   75,  335)
  Facet #19 intersects facet #19 at triangles:
    (  74,   75,  334) and ( 451,   74,  454)
  Facet #19 intersects facet #19 at triangles:
    ( 451,   74,  454) and ( 334,   75,  331)
  Facet #19 intersects facet #19 at triangles:
    ( 330,   74,  451) and ( 334,   75,  331)
  Facet #19 intersects facet #19 at triangles:
    ( 330,   74,  451) and ( 331,   75,  335)
  Facet #19 intersects facet #19 at triangles:
    ( 333,   74,   73) and ( 335,   73,  331)
  Facet #19 intersects facet #19 at triangles:
    ( 334,   73,   74) and ( 453,   74,  443)
  Facet #19 intersects facet #19 at triangles:
    ( 331,   73,  334) and ( 453,   74,  443)
  Facet #19 intersects facet #19 at triangles:
    ( 331,   73,  334) and ( 443,   74,  333)
  Facet #19 intersects facet #19 at triangles:
    ( 335,   73,  331) and ( 443,   74,  333)
  Facet #19 intersects facet #19 at triangles:
    (  75,   74,  330) and ( 331,   75,  335)
  Facet #19 intersects facet #19 at triangles:
    (  74,   75,  334) and ( 451,   74,  454)
  Facet #19 intersects facet #19 at triangles:
    ( 451,   74,  454) and ( 334,   75,  331)
  Facet #19 intersects facet #19 at triangles:
    ( 330,   74,  451) and ( 334,   75,  331)
  Facet #19 intersects facet #19 at triangles:
    ( 330,   74,  451) and ( 331,   75,  335)
  Facet #19 intersects facet #19 at triangles:
    ( 333,   74,   73) and ( 335,   73,  331)
  Facet #19 intersects facet #19 at triangles:
    ( 334,   73,   74) and ( 453,   74,  443)
  Facet #19 intersects facet #19 at triangles:
    ( 331,   73,  334) and ( 453,   74,  443)
  Facet #19 intersects facet #19 at triangles:
    ( 331,   73,  334) and ( 443,   74,  333)
  Facet #19 intersects facet #19 at triangles:
    ( 335,   73,  331) and ( 443,   74,  333)
  Facet #19 intersects facet #19 at triangles:
    (  75,   74,  330) and ( 331,   75,  335)
  Facet #19 intersects facet #19 at triangles:
    (  74,   75,  334) and ( 451,   74,  454)
  Facet #19 intersects facet #19 at triangles:
    ( 451,   74,  454) and ( 334,   75,  331)
  Facet #19 intersects facet #19 at triangles:
    ( 330,   74,  451) and ( 334,   75,  331)
  Facet #19 intersects facet #19 at triangles:
    ( 330,   74,  451) and ( 331,   75,  335)

!! Found 40 pairs of faces are intersecting.

Self-intersection seconds:  0.100192
Writing nodes.
Writing faces.
Info    : 12 intersecting faces have been saved into 'intersect.pos'
Warning : Volume 1 consists of no elements
Info    : Done meshing 3D (0.113881 s)
Info    : 936 vertices 2112 elements
Error   : ------------------------------
Error   : Mesh generation error summary
Error   :     1 warning
Error   :     1 error
Error   : Check the full log for details
Error   : ------------------------------
Info    : Writing 'temp.msh'...
Info    : Done writing 'temp.msh'
Info    : Stopped on Tue Dec 12 14:06:57 2017