API tools faq
paste
Advertisement
Guest User

Iran_N Models with CHG

a guest
May 9th, 2022
103
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 56.89 KB | None | 0 0
raw download clone embed print report
  1.  
  2. left pops:
  3. Iran_N
  4. CHG.SG
  5. ZlatyKun
  6. Kenya_PastoralN
  7. Tyumen_HG
  8.  
  9. right pops:
  10. Eastern_Euro_UP.SG
  11. Cameroon_SMA.SG
  12. South_Africa_400BP.SG
  13. Mota
  14. South_Africa_HG
  15. Indian_GreatAndaman_100BP.SG
  16. DevilsGate_N.SG
  17. Yana_UP
  18. BachoKiro
  19. Nepal_Samdzong_1500BP.SG
  20. Kazakhstan_Botai_Eneolithic.SG
  21. Boncuklu_N.SG
  22. Morocco_EN.SG
  23. MA1
  24. Italy_Mesolithic.SG
  25.  
  26. 0 Iran_N 4
  27. 1 CHG.SG 2
  28. 2 ZlatyKun 1
  29. 3 Kenya_PastoralN 8
  30. 4 Tyumen_HG 2
  31. 5 Eastern_Euro_UP.SG 3
  32. 6 Cameroon_SMA.SG 3
  33. 7 South_Africa_400BP.SG 4
  34. 8 Mota 1
  35. 9 South_Africa_HG 4
  36. 10 Indian_GreatAndaman_100BP.SG 1
  37. 11 DevilsGate_N.SG 4
  38. 12 Yana_UP 2
  39. 13 BachoKiro 3
  40. 14 Nepal_Samdzong_1500BP.SG 3
  41. 15 Kazakhstan_Botai_Eneolithic.SG 3
  42. 16 Boncuklu_N.SG 6
  43. 17 Morocco_EN.SG 3
  44. 18 MA1 1
  45. 19 Italy_Mesolithic.SG 3
  46. jackknife block size: 0.050
  47. snps: 1150467 indivs: 61
  48. number of blocks for block jackknife: 714
  49. ## ncols: 1150467
  50. coverage: Iran_N 1002874
  51. coverage: CHG.SG 1134595
  52. coverage: ZlatyKun 1120502
  53. coverage: Kenya_PastoralN 1061629
  54. coverage: Tyumen_HG 799008
  55. coverage: Eastern_Euro_UP.SG 1150149
  56. coverage: Cameroon_SMA.SG 1149654
  57. coverage: South_Africa_400BP.SG 1150180
  58. coverage: Mota 1134612
  59. coverage: South_Africa_HG 1135129
  60. coverage: Indian_GreatAndaman_100BP.SG 1133183
  61. coverage: DevilsGate_N.SG 1134715
  62. coverage: Yana_UP 1135189
  63. coverage: BachoKiro 990561
  64. coverage: Nepal_Samdzong_1500BP.SG 1149327
  65. coverage: Kazakhstan_Botai_Eneolithic.SG 1149869
  66. coverage: Boncuklu_N.SG 1138952
  67. coverage: Morocco_EN.SG 653097
  68. coverage: MA1 796065
  69. coverage: Italy_Mesolithic.SG 1141309
  70. Effective number of blocks: 626.895
  71. numsnps used: 428996
  72. codimension 1
  73. f4info:
  74. f4rank: 3 dof: 11 chisq: 13.570 tail: 0.257687451 dofdiff: 13 chisqdiff: -13.570 taildiff: 1
  75. B:
  76. scale 1.000 1.000 1.000
  77. Cameroon_SMA.SG 1.718 0.160 0.167
  78. South_Africa_400BP.SG 1.719 0.221 -0.226
  79. Mota 1.670 0.118 0.016
  80. South_Africa_HG 1.819 0.192 0.071
  81. Indian_GreatAndaman_100BP.SG 0.096 0.100 1.361
  82. DevilsGate_N.SG -0.018 0.196 0.983
  83. Yana_UP -0.067 0.265 0.517
  84. BachoKiro 0.220 -0.125 1.918
  85. Nepal_Samdzong_1500BP.SG -0.006 0.379 1.250
  86. Kazakhstan_Botai_Eneolithic.SG -0.703 2.817 -1.196
  87. Boncuklu_N.SG 0.146 -1.033 -1.513
  88. Morocco_EN.SG 1.024 -0.056 -0.844
  89. MA1 -0.604 2.141 -0.715
  90. Italy_Mesolithic.SG -0.062 0.052 -0.804
  91. A:
  92. scale 275.848 688.312 1354.323
  93. CHG.SG -0.220 -0.291 -0.723
  94. ZlatyKun 0.298 0.157 1.845
  95. Kenya_PastoralN 1.844 0.667 -0.148
  96. Tyumen_HG -0.680 1.856 -0.225
  97.  
  98.  
  99. full rank
  100. f4info:
  101. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 13.570 taildiff: 0.257687451
  102. B:
  103. scale 902.109 532.444 150.462 249.984
  104. Cameroon_SMA.SG -1.493 1.237 1.767 -0.862
  105. South_Africa_400BP.SG -1.396 0.987 1.776 -0.837
  106. Mota -1.631 0.989 1.694 -0.914
  107. South_Africa_HG -1.431 1.311 1.886 -0.893
  108. Indian_GreatAndaman_100BP.SG -0.990 1.202 0.097 0.025
  109. DevilsGate_N.SG -0.474 0.981 0.032 0.219
  110. Yana_UP -0.264 0.539 -0.008 0.305
  111. BachoKiro -1.342 1.607 0.167 -0.240
  112. Nepal_Samdzong_1500BP.SG -0.891 1.045 0.040 0.275
  113. Kazakhstan_Botai_Eneolithic.SG -0.204 -0.859 -0.271 2.445
  114. Boncuklu_N.SG 0.727 -1.083 0.022 -0.654
  115. Morocco_EN.SG -0.328 0.125 1.056 -0.556
  116. MA1 -0.303 -0.607 -0.264 1.968
  117. Italy_Mesolithic.SG 0.687 -0.364 0.008 0.249
  118. A:
  119. scale 2.000 2.000 2.000 2.000
  120. CHG.SG 2.000 0.000 0.000 0.000
  121. ZlatyKun 0.000 2.000 0.000 0.000
  122. Kenya_PastoralN 0.000 0.000 2.000 0.000
  123. Tyumen_HG 0.000 0.000 0.000 2.000
  124.  
  125.  
  126. best coefficients: 0.630 0.258 0.055 0.057
  127. Jackknife mean: 0.629123399 0.258301555 0.054789565 0.057785481
  128. std. errors: 0.034 0.035 0.018 0.018
  129.  
  130. error covariance (* 1,000,000)
  131. 1161 -772 -25 -364
  132. -772 1205 -380 -53
  133. -25 -380 307 98
  134. -364 -53 98 319
  135.  
  136.  
  137. summ: Iran_N 4 0.257687 0.629 0.258 0.055 0.058 1161 -772 -25 -364 1205 ...
  138. -380 -53 307 98 319
  139.  
  140. fixed pat wt dof chisq tail prob
  141. 0000 0 11 13.570 0.257687 0.630 0.258 0.055 0.057
  142. 0001 1 12 24.718 0.0162194 0.702 0.262 0.036 0.000
  143. 0010 1 12 22.126 0.0361356 0.635 0.324 0.000 0.041
  144. 0100 1 12 68.766 5.44586e-10 0.825 0.000 0.123 0.052
  145. 1000 1 12 213.527 0 0.000 0.926 -0.074 0.148 infeasible
  146. 0011 2 13 29.244 0.0060429 0.689 0.311 0.000 0.000
  147. 0101 2 13 72.029 3.38876e-10 0.890 0.000 0.110 0.000
  148. 0110 2 13 132.267 7.39345e-22 1.021 0.000 0.000 -0.021 infeasible
  149. 1001 2 13 253.816 0 0.000 1.187 -0.187 0.000 infeasible
  150. 1010 2 13 213.574 0 0.000 0.829 0.000 0.171
  151. 1100 2 13 817.080 0 0.000 0.000 0.441 0.559
  152. 0111 3 14 127.569 2.05005e-20 1.000 0.000 0.000 0.000
  153. 1011 3 14 287.099 0 0.000 1.000 0.000 0.000
  154. 1101 3 14 3183.156 0 0.000 0.000 1.000 0.000
  155. 1110 3 14 1858.443 0 0.000 0.000 0.000 1.000
  156. best pat: 0000 0.257687 - -
  157. best pat: 0010 0.0361356 chi(nested): 8.555 p-value for nested model: 0.00344513
  158. best pat: 0011 0.0060429 chi(nested): 7.119 p-value for nested model: 0.00762845
  159. best pat: 0111 2.05005e-20 chi(nested): 98.325 p-value for nested model: 3.55033e-23
  160.  
  161. coeffs: 0.630 0.258 0.055 0.057
  162.  
  163. ## dscore:: f_4(Base, Fit, Rbase, right2)
  164. ## genstat:: f_4(Base, Fit, right1, right2)
  165.  
  166. details: CHG.SG Cameroon_SMA.SG -0.001656 -4.890082
  167. details: ZlatyKun Cameroon_SMA.SG 0.002322 5.199641
  168. details: Kenya_PastoralN Cameroon_SMA.SG 0.011742 37.596280
  169. details: Tyumen_HG Cameroon_SMA.SG -0.003449 -8.417715
  170. dscore: Cameroon_SMA.SG f4: -0.000000 Z: -0.000433
  171.  
  172. details: CHG.SG South_Africa_400BP.SG -0.001548 -4.734652
  173. details: ZlatyKun South_Africa_400BP.SG 0.001853 4.255609
  174. details: Kenya_PastoralN South_Africa_400BP.SG 0.011804 39.126880
  175. details: Tyumen_HG South_Africa_400BP.SG -0.003350 -8.553487
  176. dscore: South_Africa_400BP.SG f4: -0.000044 Z: -0.157552
  177.  
  178. details: CHG.SG Mota -0.001808 -4.665796
  179. details: ZlatyKun Mota 0.001857 3.643190
  180. details: Kenya_PastoralN Mota 0.011259 31.904822
  181. details: Tyumen_HG Mota -0.003655 -7.799362
  182. dscore: Mota f4: -0.000255 Z: -0.763020
  183.  
  184. details: CHG.SG South_Africa_HG -0.001586 -4.631679
  185. details: ZlatyKun South_Africa_HG 0.002462 5.389577
  186. details: Kenya_PastoralN South_Africa_HG 0.012532 39.884059
  187. details: Tyumen_HG South_Africa_HG -0.003571 -8.644331
  188. dscore: South_Africa_HG f4: 0.000116 Z: 0.396105
  189.  
  190. details: CHG.SG Indian_GreatAndaman_100BP.SG -0.001098 -2.799088
  191. details: ZlatyKun Indian_GreatAndaman_100BP.SG 0.002257 4.564708
  192. details: Kenya_PastoralN Indian_GreatAndaman_100BP.SG 0.000643 2.088411
  193. details: Tyumen_HG Indian_GreatAndaman_100BP.SG 0.000100 0.212978
  194. dscore: Indian_GreatAndaman_100BP.SG f4: -0.000068 Z: -0.204340
  195.  
  196. details: CHG.SG DevilsGate_N.SG -0.000525 -1.584664
  197. details: ZlatyKun DevilsGate_N.SG 0.001842 4.364450
  198. details: Kenya_PastoralN DevilsGate_N.SG 0.000213 0.767924
  199. details: Tyumen_HG DevilsGate_N.SG 0.000877 2.203534
  200. dscore: DevilsGate_N.SG f4: 0.000207 Z: 0.741215
  201.  
  202. details: CHG.SG Yana_UP -0.000292 -0.913850
  203. details: ZlatyKun Yana_UP 0.001013 2.476252
  204. details: Kenya_PastoralN Yana_UP -0.000055 -0.210906
  205. details: Tyumen_HG Yana_UP 0.001221 3.065189
  206. dscore: Yana_UP f4: 0.000144 Z: 0.535560
  207.  
  208. details: CHG.SG BachoKiro -0.001488 -4.396173
  209. details: ZlatyKun BachoKiro 0.003019 6.497384
  210. details: Kenya_PastoralN BachoKiro 0.001109 3.834169
  211. details: Tyumen_HG BachoKiro -0.000958 -2.316110
  212. dscore: BachoKiro f4: -0.000153 Z: -0.541243
  213.  
  214. details: CHG.SG Nepal_Samdzong_1500BP.SG -0.000988 -3.228837
  215. details: ZlatyKun Nepal_Samdzong_1500BP.SG 0.001962 4.750181
  216. details: Kenya_PastoralN Nepal_Samdzong_1500BP.SG 0.000266 0.986339
  217. details: Tyumen_HG Nepal_Samdzong_1500BP.SG 0.001101 2.799504
  218. dscore: Nepal_Samdzong_1500BP.SG f4: -0.000038 Z: -0.144391
  219.  
  220. details: CHG.SG Kazakhstan_Botai_Eneolithic.SG -0.000226 -0.719055
  221. details: ZlatyKun Kazakhstan_Botai_Eneolithic.SG -0.001613 -4.265809
  222. details: Kenya_PastoralN Kazakhstan_Botai_Eneolithic.SG -0.001798 -7.098182
  223. details: Tyumen_HG Kazakhstan_Botai_Eneolithic.SG 0.009780 25.547294
  224. dscore: Kazakhstan_Botai_Eneolithic.SG f4: -0.000095 Z: -0.366903
  225.  
  226. details: CHG.SG Boncuklu_N.SG 0.000806 2.600497
  227. details: ZlatyKun Boncuklu_N.SG -0.002035 -5.455498
  228. details: Kenya_PastoralN Boncuklu_N.SG 0.000147 0.563243
  229. details: Tyumen_HG Boncuklu_N.SG -0.002617 -7.526823
  230. dscore: Boncuklu_N.SG f4: -0.000160 Z: -0.612725
  231.  
  232. details: CHG.SG Morocco_EN.SG -0.000364 -0.962049
  233. details: ZlatyKun Morocco_EN.SG 0.000236 0.488894
  234. details: Kenya_PastoralN Morocco_EN.SG 0.007019 21.339504
  235. details: Tyumen_HG Morocco_EN.SG -0.002224 -5.180827
  236. dscore: Morocco_EN.SG f4: 0.000087 Z: 0.271034
  237.  
  238. details: CHG.SG MA1 -0.000336 -0.874624
  239. details: ZlatyKun MA1 -0.001140 -2.259288
  240. details: Kenya_PastoralN MA1 -0.001757 -5.428591
  241. details: Tyumen_HG MA1 0.007873 15.546187
  242. dscore: MA1 f4: -0.000150 Z: -0.453579
  243.  
  244. details: CHG.SG Italy_Mesolithic.SG 0.000762 2.313144
  245. details: ZlatyKun Italy_Mesolithic.SG -0.000684 -1.766406
  246. details: Kenya_PastoralN Italy_Mesolithic.SG 0.000056 0.199250
  247. details: Tyumen_HG Italy_Mesolithic.SG 0.000995 2.573282
  248. dscore: Italy_Mesolithic.SG f4: 0.000364 Z: 1.325616
  249.  
  250. gendstat: Eastern_Euro_UP.SG Cameroon_SMA.SG -0.000
  251. gendstat: Eastern_Euro_UP.SG South_Africa_400BP.SG -0.158
  252. gendstat: Eastern_Euro_UP.SG Mota -0.763
  253. gendstat: Eastern_Euro_UP.SG South_Africa_HG 0.396
  254. gendstat: Eastern_Euro_UP.SG Indian_GreatAndaman_100BP.SG -0.204
  255. gendstat: Eastern_Euro_UP.SG DevilsGate_N.SG 0.741
  256. gendstat: Eastern_Euro_UP.SG Yana_UP 0.536
  257. gendstat: Eastern_Euro_UP.SG BachoKiro -0.541
  258. gendstat: Eastern_Euro_UP.SG Nepal_Samdzong_1500BP.SG -0.144
  259. gendstat: Eastern_Euro_UP.SG Kazakhstan_Botai_Eneolithic.SG -0.367
  260. gendstat: Eastern_Euro_UP.SG Boncuklu_N.SG -0.613
  261. gendstat: Eastern_Euro_UP.SG Morocco_EN.SG 0.271
  262. gendstat: Eastern_Euro_UP.SG MA1 -0.454
  263. gendstat: Eastern_Euro_UP.SG Italy_Mesolithic.SG 1.326
  264. gendstat: Cameroon_SMA.SG South_Africa_400BP.SG -0.239
  265. gendstat: Cameroon_SMA.SG Mota -0.917
  266. gendstat: Cameroon_SMA.SG South_Africa_HG 0.605
  267. gendstat: Cameroon_SMA.SG Indian_GreatAndaman_100BP.SG -0.198
  268. gendstat: Cameroon_SMA.SG DevilsGate_N.SG 0.723
  269. gendstat: Cameroon_SMA.SG Yana_UP 0.505
  270. gendstat: Cameroon_SMA.SG BachoKiro -0.543
  271. gendstat: Cameroon_SMA.SG Nepal_Samdzong_1500BP.SG -0.136
  272. gendstat: Cameroon_SMA.SG Kazakhstan_Botai_Eneolithic.SG -0.327
  273. gendstat: Cameroon_SMA.SG Boncuklu_N.SG -0.596
  274. gendstat: Cameroon_SMA.SG Morocco_EN.SG 0.287
  275. gendstat: Cameroon_SMA.SG MA1 -0.417
  276. gendstat: Cameroon_SMA.SG Italy_Mesolithic.SG 1.202
  277. gendstat: South_Africa_400BP.SG Mota -0.806
  278. gendstat: South_Africa_400BP.SG South_Africa_HG 0.858
  279. gendstat: South_Africa_400BP.SG Indian_GreatAndaman_100BP.SG -0.074
  280. gendstat: South_Africa_400BP.SG DevilsGate_N.SG 0.898
  281. gendstat: South_Africa_400BP.SG Yana_UP 0.665
  282. gendstat: South_Africa_400BP.SG BachoKiro -0.397
  283. gendstat: South_Africa_400BP.SG Nepal_Samdzong_1500BP.SG 0.022
  284. gendstat: South_Africa_400BP.SG Kazakhstan_Botai_Eneolithic.SG -0.189
  285. gendstat: South_Africa_400BP.SG Boncuklu_N.SG -0.455
  286. gendstat: South_Africa_400BP.SG Morocco_EN.SG 0.455
  287. gendstat: South_Africa_400BP.SG MA1 -0.300
  288. gendstat: South_Africa_400BP.SG Italy_Mesolithic.SG 1.379
  289. gendstat: Mota South_Africa_HG 1.344
  290. gendstat: Mota Indian_GreatAndaman_100BP.SG 0.483
  291. gendstat: Mota DevilsGate_N.SG 1.426
  292. gendstat: Mota Yana_UP 1.177
  293. gendstat: Mota BachoKiro 0.305
  294. gendstat: Mota Nepal_Samdzong_1500BP.SG 0.669
  295. gendstat: Mota Kazakhstan_Botai_Eneolithic.SG 0.491
  296. gendstat: Mota Boncuklu_N.SG 0.305
  297. gendstat: Mota Morocco_EN.SG 1.027
  298. gendstat: Mota MA1 0.271
  299. gendstat: Mota Italy_Mesolithic.SG 1.745
  300. gendstat: South_Africa_HG Indian_GreatAndaman_100BP.SG -0.549
  301. gendstat: South_Africa_HG DevilsGate_N.SG 0.318
  302. gendstat: South_Africa_HG Yana_UP 0.096
  303. gendstat: South_Africa_HG BachoKiro -0.973
  304. gendstat: South_Africa_HG Nepal_Samdzong_1500BP.SG -0.577
  305. gendstat: South_Africa_HG Kazakhstan_Botai_Eneolithic.SG -0.749
  306. gendstat: South_Africa_HG Boncuklu_N.SG -1.073
  307. gendstat: South_Africa_HG Morocco_EN.SG -0.091
  308. gendstat: South_Africa_HG MA1 -0.738
  309. gendstat: South_Africa_HG Italy_Mesolithic.SG 0.814
  310. gendstat: Indian_GreatAndaman_100BP.SG DevilsGate_N.SG 0.876
  311. gendstat: Indian_GreatAndaman_100BP.SG Yana_UP 0.616
  312. gendstat: Indian_GreatAndaman_100BP.SG BachoKiro -0.252
  313. gendstat: Indian_GreatAndaman_100BP.SG Nepal_Samdzong_1500BP.SG 0.098
  314. gendstat: Indian_GreatAndaman_100BP.SG Kazakhstan_Botai_Eneolithic.SG -0.085
  315. gendstat: Indian_GreatAndaman_100BP.SG Boncuklu_N.SG -0.279
  316. gendstat: Indian_GreatAndaman_100BP.SG Morocco_EN.SG 0.395
  317. gendstat: Indian_GreatAndaman_100BP.SG MA1 -0.216
  318. gendstat: Indian_GreatAndaman_100BP.SG Italy_Mesolithic.SG 1.219
  319. gendstat: DevilsGate_N.SG Yana_UP -0.221
  320. gendstat: DevilsGate_N.SG BachoKiro -1.259
  321. gendstat: DevilsGate_N.SG Nepal_Samdzong_1500BP.SG -1.115
  322. gendstat: DevilsGate_N.SG Kazakhstan_Botai_Eneolithic.SG -1.122
  323. gendstat: DevilsGate_N.SG Boncuklu_N.SG -1.330
  324. gendstat: DevilsGate_N.SG Morocco_EN.SG -0.361
  325. gendstat: DevilsGate_N.SG MA1 -0.987
  326. gendstat: DevilsGate_N.SG Italy_Mesolithic.SG 0.500
  327. gendstat: Yana_UP BachoKiro -1.021
  328. gendstat: Yana_UP Nepal_Samdzong_1500BP.SG -0.669
  329. gendstat: Yana_UP Kazakhstan_Botai_Eneolithic.SG -0.893
  330. gendstat: Yana_UP Boncuklu_N.SG -1.112
  331. gendstat: Yana_UP Morocco_EN.SG -0.168
  332. gendstat: Yana_UP MA1 -0.861
  333. gendstat: Yana_UP Italy_Mesolithic.SG 0.755
  334. gendstat: BachoKiro Nepal_Samdzong_1500BP.SG 0.422
  335. gendstat: BachoKiro Kazakhstan_Botai_Eneolithic.SG 0.202
  336. gendstat: BachoKiro Boncuklu_N.SG -0.025
  337. gendstat: BachoKiro Morocco_EN.SG 0.713
  338. gendstat: BachoKiro MA1 0.007
  339. gendstat: BachoKiro Italy_Mesolithic.SG 1.670
  340. gendstat: Nepal_Samdzong_1500BP.SG Kazakhstan_Botai_Eneolithic.SG -0.230
  341. gendstat: Nepal_Samdzong_1500BP.SG Boncuklu_N.SG -0.484
  342. gendstat: Nepal_Samdzong_1500BP.SG Morocco_EN.SG 0.387
  343. gendstat: Nepal_Samdzong_1500BP.SG MA1 -0.342
  344. gendstat: Nepal_Samdzong_1500BP.SG Italy_Mesolithic.SG 1.353
  345. gendstat: Kazakhstan_Botai_Eneolithic.SG Boncuklu_N.SG -0.255
  346. gendstat: Kazakhstan_Botai_Eneolithic.SG Morocco_EN.SG 0.560
  347. gendstat: Kazakhstan_Botai_Eneolithic.SG MA1 -0.179
  348. gendstat: Kazakhstan_Botai_Eneolithic.SG Italy_Mesolithic.SG 1.623
  349. gendstat: Boncuklu_N.SG Morocco_EN.SG 0.793
  350. gendstat: Boncuklu_N.SG MA1 0.028
  351. gendstat: Boncuklu_N.SG Italy_Mesolithic.SG 1.984
  352. gendstat: Morocco_EN.SG MA1 -0.582
  353. gendstat: Morocco_EN.SG Italy_Mesolithic.SG 0.816
  354. gendstat: MA1 Italy_Mesolithic.SG 1.440
  355.  
  356.  
  357.  
  358.  
  359. left pops:
  360. Iran_N
  361. CHG.SG
  362. ZlatyKun
  363. Kulubnarti_MA
  364. Tyumen_HG
  365.  
  366. right pops:
  367. Eastern_Euro_UP.SG
  368. Cameroon_SMA.SG
  369. South_Africa_400BP.SG
  370. Mota
  371. South_Africa_HG
  372. Indian_GreatAndaman_100BP.SG
  373. DevilsGate_N.SG
  374. Yana_UP
  375. BachoKiro
  376. Nepal_Samdzong_1500BP.SG
  377. Kazakhstan_Botai_Eneolithic.SG
  378. Boncuklu_N.SG
  379. Morocco_EN.SG
  380. MA1
  381. Italy_Mesolithic.SG
  382.  
  383. 0 Iran_N 4
  384. 1 CHG.SG 2
  385. 2 ZlatyKun 1
  386. 3 Kulubnarti_MA 43
  387. 4 Tyumen_HG 2
  388. 5 Eastern_Euro_UP.SG 3
  389. 6 Cameroon_SMA.SG 3
  390. 7 South_Africa_400BP.SG 4
  391. 8 Mota 1
  392. 9 South_Africa_HG 4
  393. 10 Indian_GreatAndaman_100BP.SG 1
  394. 11 DevilsGate_N.SG 4
  395. 12 Yana_UP 2
  396. 13 BachoKiro 3
  397. 14 Nepal_Samdzong_1500BP.SG 3
  398. 15 Kazakhstan_Botai_Eneolithic.SG 3
  399. 16 Boncuklu_N.SG 6
  400. 17 Morocco_EN.SG 3
  401. 18 MA1 1
  402. 19 Italy_Mesolithic.SG 3
  403. jackknife block size: 0.050
  404. snps: 1150454 indivs: 96
  405. number of blocks for block jackknife: 714
  406. ## ncols: 1150454
  407. coverage: Iran_N 1002874
  408. coverage: CHG.SG 1134595
  409. coverage: ZlatyKun 1120502
  410. coverage: Kulubnarti_MA 1108875
  411. coverage: Tyumen_HG 799008
  412. coverage: Eastern_Euro_UP.SG 1150149
  413. coverage: Cameroon_SMA.SG 1149654
  414. coverage: South_Africa_400BP.SG 1150180
  415. coverage: Mota 1134612
  416. coverage: South_Africa_HG 1135129
  417. coverage: Indian_GreatAndaman_100BP.SG 1133183
  418. coverage: DevilsGate_N.SG 1134715
  419. coverage: Yana_UP 1135189
  420. coverage: BachoKiro 990561
  421. coverage: Nepal_Samdzong_1500BP.SG 1149327
  422. coverage: Kazakhstan_Botai_Eneolithic.SG 1149869
  423. coverage: Boncuklu_N.SG 1138952
  424. coverage: Morocco_EN.SG 653097
  425. coverage: MA1 796065
  426. coverage: Italy_Mesolithic.SG 1141309
  427. Effective number of blocks: 628.132
  428. numsnps used: 399749
  429. codimension 1
  430. f4info:
  431. f4rank: 3 dof: 11 chisq: 12.406 tail: 0.333881387 dofdiff: 13 chisqdiff: -12.406 taildiff: 1
  432. B:
  433. scale 1.000 1.000 1.000
  434. Cameroon_SMA.SG 1.674 0.434 0.074
  435. South_Africa_400BP.SG 1.696 0.523 -0.315
  436. Mota 1.551 0.295 0.050
  437. South_Africa_HG 1.665 0.369 0.132
  438. Indian_GreatAndaman_100BP.SG 0.087 0.126 1.345
  439. DevilsGate_N.SG -0.056 0.187 1.020
  440. Yana_UP -0.121 0.227 0.564
  441. BachoKiro 0.179 -0.142 1.923
  442. Nepal_Samdzong_1500BP.SG -0.039 0.392 1.211
  443. Kazakhstan_Botai_Eneolithic.SG -0.995 2.769 -0.975
  444. Boncuklu_N.SG 0.355 -0.938 -1.589
  445. Morocco_EN.SG 1.135 0.217 -1.026
  446. MA1 -0.825 2.105 -0.571
  447. Italy_Mesolithic.SG -0.010 0.096 -0.831
  448. A:
  449. scale 322.331 700.974 1205.113
  450. CHG.SG -0.272 -0.372 -0.739
  451. ZlatyKun 0.391 0.217 1.832
  452. Kulubnarti_MA 1.664 0.855 -0.196
  453. Tyumen_HG -1.001 1.756 -0.245
  454.  
  455.  
  456. full rank
  457. f4info:
  458. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 12.406 taildiff: 0.333881387
  459. B:
  460. scale 842.793 494.038 192.558 232.666
  461. Cameroon_SMA.SG -1.497 1.238 1.784 -0.862
  462. South_Africa_400BP.SG -1.407 0.985 1.831 -0.838
  463. Mota -1.637 0.983 1.597 -0.917
  464. South_Africa_HG -1.422 1.309 1.771 -0.895
  465. Indian_GreatAndaman_100BP.SG -1.000 1.213 0.077 0.026
  466. DevilsGate_N.SG -0.475 0.985 0.004 0.219
  467. Yana_UP -0.246 0.545 -0.046 0.301
  468. BachoKiro -1.324 1.604 0.081 -0.240
  469. Nepal_Samdzong_1500BP.SG -0.882 1.040 0.032 0.275
  470. Kazakhstan_Botai_Eneolithic.SG -0.197 -0.852 -0.304 2.448
  471. Boncuklu_N.SG 0.734 -1.083 0.180 -0.657
  472. Morocco_EN.SG -0.312 0.120 1.242 -0.559
  473. MA1 -0.333 -0.612 -0.297 1.961
  474. Italy_Mesolithic.SG 0.688 -0.372 0.103 0.246
  475. A:
  476. scale 2.000 2.000 2.000 2.000
  477. CHG.SG 2.000 0.000 0.000 0.000
  478. ZlatyKun 0.000 2.000 0.000 0.000
  479. Kulubnarti_MA 0.000 0.000 2.000 0.000
  480. Tyumen_HG 0.000 0.000 0.000 2.000
  481.  
  482.  
  483. best coefficients: 0.606 0.260 0.074 0.060
  484. Jackknife mean: 0.604903942 0.260508712 0.074141750 0.060445596
  485. std. errors: 0.035 0.033 0.023 0.018
  486.  
  487. error covariance (* 1,000,000)
  488. 1221 -591 -222 -408
  489. -591 1098 -449 -57
  490. -222 -449 527 144
  491. -408 -57 144 321
  492.  
  493.  
  494. summ: Iran_N 4 0.333881 0.605 0.261 0.074 0.060 1221 -591 -222 -408 1098 ...
  495. -449 -57 527 144 321
  496.  
  497. fixed pat wt dof chisq tail prob
  498. 0000 0 11 12.406 0.333881 0.606 0.260 0.074 0.060
  499. 0001 1 12 409.562 0 1.249 -0.490 0.241 0.000 infeasible
  500. 0010 1 12 20.978 0.0507086 0.637 0.322 0.000 0.041
  501. 0100 1 12 73.128 8.28807e-11 0.785 0.000 0.159 0.055
  502. 1000 1 12 215.805 0 0.000 0.803 0.022 0.176
  503. 0011 2 13 27.811 0.00961464 0.690 0.310 0.000 0.000
  504. 0101 2 13 77.639 3.06051e-11 0.862 0.000 0.138 0.000
  505. 0110 2 13 129.322 2.85346e-21 1.019 0.000 0.000 -0.019 infeasible
  506. 1001 2 13 271.036 0 0.000 1.157 -0.157 0.000 infeasible
  507. 1010 2 13 213.974 0 0.000 0.829 0.000 0.171
  508. 1100 2 13 640.762 0 0.000 0.000 0.543 0.457
  509. 0111 3 14 125.028 6.48645e-20 1.000 0.000 0.000 0.000
  510. 1011 3 14 285.315 0 0.000 1.000 0.000 0.000
  511. 1101 3 14 2214.365 0 0.000 0.000 1.000 0.000
  512. 1110 3 14 1857.383 0 0.000 0.000 0.000 1.000
  513. best pat: 0000 0.333881 - -
  514. best pat: 0010 0.0507086 chi(nested): 8.571 p-value for nested model: 0.00341516
  515. best pat: 0011 0.00961464 chi(nested): 6.834 p-value for nested model: 0.00894632
  516. best pat: 0111 6.48645e-20 chi(nested): 97.217 p-value for nested model: 6.21242e-23
  517.  
  518. coeffs: 0.606 0.260 0.074 0.060
  519.  
  520. ## dscore:: f_4(Base, Fit, Rbase, right2)
  521. ## genstat:: f_4(Base, Fit, right1, right2)
  522.  
  523. details: CHG.SG Cameroon_SMA.SG -0.001776 -4.860159
  524. details: ZlatyKun Cameroon_SMA.SG 0.002505 5.209365
  525. details: Kulubnarti_MA Cameroon_SMA.SG 0.009264 31.210831
  526. details: Tyumen_HG Cameroon_SMA.SG -0.003705 -8.398375
  527. dscore: Cameroon_SMA.SG f4: 0.000038 Z: 0.123174
  528.  
  529. details: CHG.SG South_Africa_400BP.SG -0.001670 -4.743352
  530. details: ZlatyKun South_Africa_400BP.SG 0.001994 4.260818
  531. details: Kulubnarti_MA South_Africa_400BP.SG 0.009507 33.073596
  532. details: Tyumen_HG South_Africa_400BP.SG -0.003602 -8.557323
  533. dscore: South_Africa_400BP.SG f4: -0.000006 Z: -0.020623
  534.  
  535. details: CHG.SG Mota -0.001943 -4.665213
  536. details: ZlatyKun Mota 0.001989 3.627785
  537. details: Kulubnarti_MA Mota 0.008293 24.574419
  538. details: Tyumen_HG Mota -0.003939 -7.831057
  539. dscore: Mota f4: -0.000283 Z: -0.796267
  540.  
  541. details: CHG.SG South_Africa_HG -0.001687 -4.577135
  542. details: ZlatyKun South_Africa_HG 0.002649 5.394744
  543. details: Kulubnarti_MA South_Africa_HG 0.009196 31.121827
  544. details: Tyumen_HG South_Africa_HG -0.003846 -8.659838
  545. dscore: South_Africa_HG f4: 0.000116 Z: 0.372535
  546.  
  547. details: CHG.SG Indian_GreatAndaman_100BP.SG -0.001186 -2.811373
  548. details: ZlatyKun Indian_GreatAndaman_100BP.SG 0.002455 4.622142
  549. details: Kulubnarti_MA Indian_GreatAndaman_100BP.SG 0.000399 1.293797
  550. details: Tyumen_HG Indian_GreatAndaman_100BP.SG 0.000112 0.221426
  551. dscore: Indian_GreatAndaman_100BP.SG f4: -0.000043 Z: -0.121065
  552.  
  553. details: CHG.SG DevilsGate_N.SG -0.000564 -1.584109
  554. details: ZlatyKun DevilsGate_N.SG 0.001994 4.396191
  555. details: Kulubnarti_MA DevilsGate_N.SG 0.000021 0.077942
  556. details: Tyumen_HG DevilsGate_N.SG 0.000940 2.193819
  557. dscore: DevilsGate_N.SG f4: 0.000236 Z: 0.795232
  558.  
  559. details: CHG.SG Yana_UP -0.000292 -0.848969
  560. details: ZlatyKun Yana_UP 0.001103 2.502718
  561. details: Kulubnarti_MA Yana_UP -0.000237 -0.921007
  562. details: Tyumen_HG Yana_UP 0.001296 3.026499
  563. dscore: Yana_UP f4: 0.000170 Z: 0.593867
  564.  
  565. details: CHG.SG BachoKiro -0.001571 -4.314201
  566. details: ZlatyKun BachoKiro 0.003247 6.489590
  567. details: Kulubnarti_MA BachoKiro 0.000421 1.529963
  568. details: Tyumen_HG BachoKiro -0.001033 -2.320074
  569. dscore: BachoKiro f4: -0.000137 Z: -0.456208
  570.  
  571. details: CHG.SG Nepal_Samdzong_1500BP.SG -0.001046 -3.188553
  572. details: ZlatyKun Nepal_Samdzong_1500BP.SG 0.002105 4.737356
  573. details: Kulubnarti_MA Nepal_Samdzong_1500BP.SG 0.000165 0.653238
  574. details: Tyumen_HG Nepal_Samdzong_1500BP.SG 0.001182 2.789570
  575. dscore: Nepal_Samdzong_1500BP.SG f4: -0.000002 Z: -0.008742
  576.  
  577. details: CHG.SG Kazakhstan_Botai_Eneolithic.SG -0.000233 -0.689892
  578. details: ZlatyKun Kazakhstan_Botai_Eneolithic.SG -0.001725 -4.232538
  579. details: Kulubnarti_MA Kazakhstan_Botai_Eneolithic.SG -0.001580 -6.328135
  580. details: Tyumen_HG Kazakhstan_Botai_Eneolithic.SG 0.010521 25.543099
  581. dscore: Kazakhstan_Botai_Eneolithic.SG f4: -0.000075 Z: -0.271659
  582.  
  583. details: CHG.SG Boncuklu_N.SG 0.000871 2.608877
  584. details: ZlatyKun Boncuklu_N.SG -0.002192 -5.473743
  585. details: Kulubnarti_MA Boncuklu_N.SG 0.000936 3.585375
  586. details: Tyumen_HG Boncuklu_N.SG -0.002823 -7.542107
  587. dscore: Boncuklu_N.SG f4: -0.000143 Z: -0.517765
  588.  
  589. details: CHG.SG Morocco_EN.SG -0.000371 -0.907260
  590. details: ZlatyKun Morocco_EN.SG 0.000244 0.471381
  591. details: Kulubnarti_MA Morocco_EN.SG 0.006447 20.516407
  592. details: Tyumen_HG Morocco_EN.SG -0.002402 -5.200951
  593. dscore: Morocco_EN.SG f4: 0.000171 Z: 0.497873
  594.  
  595. details: CHG.SG MA1 -0.000396 -0.958539
  596. details: ZlatyKun MA1 -0.001239 -2.283825
  597. details: Kulubnarti_MA MA1 -0.001544 -4.911924
  598. details: Tyumen_HG MA1 0.008427 15.501985
  599. dscore: MA1 f4: -0.000170 Z: -0.483756
  600.  
  601. details: CHG.SG Italy_Mesolithic.SG 0.000817 2.304565
  602. details: ZlatyKun Italy_Mesolithic.SG -0.000752 -1.807123
  603. details: Kulubnarti_MA Italy_Mesolithic.SG 0.000533 1.889523
  604. details: Tyumen_HG Italy_Mesolithic.SG 0.001058 2.541239
  605. dscore: Italy_Mesolithic.SG f4: 0.000402 Z: 1.376106
  606.  
  607. gendstat: Eastern_Euro_UP.SG Cameroon_SMA.SG 0.123
  608. gendstat: Eastern_Euro_UP.SG South_Africa_400BP.SG -0.021
  609. gendstat: Eastern_Euro_UP.SG Mota -0.796
  610. gendstat: Eastern_Euro_UP.SG South_Africa_HG 0.373
  611. gendstat: Eastern_Euro_UP.SG Indian_GreatAndaman_100BP.SG -0.121
  612. gendstat: Eastern_Euro_UP.SG DevilsGate_N.SG 0.795
  613. gendstat: Eastern_Euro_UP.SG Yana_UP 0.594
  614. gendstat: Eastern_Euro_UP.SG BachoKiro -0.456
  615. gendstat: Eastern_Euro_UP.SG Nepal_Samdzong_1500BP.SG -0.009
  616. gendstat: Eastern_Euro_UP.SG Kazakhstan_Botai_Eneolithic.SG -0.272
  617. gendstat: Eastern_Euro_UP.SG Boncuklu_N.SG -0.518
  618. gendstat: Eastern_Euro_UP.SG Morocco_EN.SG 0.498
  619. gendstat: Eastern_Euro_UP.SG MA1 -0.484
  620. gendstat: Eastern_Euro_UP.SG Italy_Mesolithic.SG 1.376
  621. gendstat: Cameroon_SMA.SG South_Africa_400BP.SG -0.228
  622. gendstat: Cameroon_SMA.SG Mota -1.084
  623. gendstat: Cameroon_SMA.SG South_Africa_HG 0.381
  624. gendstat: Cameroon_SMA.SG Indian_GreatAndaman_100BP.SG -0.221
  625. gendstat: Cameroon_SMA.SG DevilsGate_N.SG 0.646
  626. gendstat: Cameroon_SMA.SG Yana_UP 0.433
  627. gendstat: Cameroon_SMA.SG BachoKiro -0.585
  628. gendstat: Cameroon_SMA.SG Nepal_Samdzong_1500BP.SG -0.136
  629. gendstat: Cameroon_SMA.SG Kazakhstan_Botai_Eneolithic.SG -0.366
  630. gendstat: Cameroon_SMA.SG Boncuklu_N.SG -0.636
  631. gendstat: Cameroon_SMA.SG Morocco_EN.SG 0.410
  632. gendstat: Cameroon_SMA.SG MA1 -0.541
  633. gendstat: Cameroon_SMA.SG Italy_Mesolithic.SG 1.126
  634. gendstat: South_Africa_400BP.SG Mota -0.998
  635. gendstat: South_Africa_400BP.SG South_Africa_HG 0.619
  636. gendstat: South_Africa_400BP.SG Indian_GreatAndaman_100BP.SG -0.106
  637. gendstat: South_Africa_400BP.SG DevilsGate_N.SG 0.814
  638. gendstat: South_Africa_400BP.SG Yana_UP 0.586
  639. gendstat: South_Africa_400BP.SG BachoKiro -0.449
  640. gendstat: South_Africa_400BP.SG Nepal_Samdzong_1500BP.SG 0.013
  641. gendstat: South_Africa_400BP.SG Kazakhstan_Botai_Eneolithic.SG -0.240
  642. gendstat: South_Africa_400BP.SG Boncuklu_N.SG -0.509
  643. gendstat: South_Africa_400BP.SG Morocco_EN.SG 0.577
  644. gendstat: South_Africa_400BP.SG MA1 -0.434
  645. gendstat: South_Africa_400BP.SG Italy_Mesolithic.SG 1.294
  646. gendstat: Mota South_Africa_HG 1.364
  647. gendstat: Mota Indian_GreatAndaman_100BP.SG 0.583
  648. gendstat: Mota DevilsGate_N.SG 1.500
  649. gendstat: Mota Yana_UP 1.257
  650. gendstat: Mota BachoKiro 0.412
  651. gendstat: Mota Nepal_Samdzong_1500BP.SG 0.812
  652. gendstat: Mota Kazakhstan_Botai_Eneolithic.SG 0.601
  653. gendstat: Mota Boncuklu_N.SG 0.421
  654. gendstat: Mota Morocco_EN.SG 1.282
  655. gendstat: Mota MA1 0.273
  656. gendstat: Mota Italy_Mesolithic.SG 1.818
  657. gendstat: South_Africa_HG Indian_GreatAndaman_100BP.SG -0.444
  658. gendstat: South_Africa_HG DevilsGate_N.SG 0.394
  659. gendstat: South_Africa_HG Yana_UP 0.175
  660. gendstat: South_Africa_HG BachoKiro -0.860
  661. gendstat: South_Africa_HG Nepal_Samdzong_1500BP.SG -0.417
  662. gendstat: South_Africa_HG Kazakhstan_Botai_Eneolithic.SG -0.637
  663. gendstat: South_Africa_HG Boncuklu_N.SG -0.950
  664. gendstat: South_Africa_HG Morocco_EN.SG 0.163
  665. gendstat: South_Africa_HG MA1 -0.744
  666. gendstat: South_Africa_HG Italy_Mesolithic.SG 0.882
  667. gendstat: Indian_GreatAndaman_100BP.SG DevilsGate_N.SG 0.839
  668. gendstat: Indian_GreatAndaman_100BP.SG Yana_UP 0.582
  669. gendstat: Indian_GreatAndaman_100BP.SG BachoKiro -0.264
  670. gendstat: Indian_GreatAndaman_100BP.SG Nepal_Samdzong_1500BP.SG 0.125
  671. gendstat: Indian_GreatAndaman_100BP.SG Kazakhstan_Botai_Eneolithic.SG -0.096
  672. gendstat: Indian_GreatAndaman_100BP.SG Boncuklu_N.SG -0.288
  673. gendstat: Indian_GreatAndaman_100BP.SG Morocco_EN.SG 0.511
  674. gendstat: Indian_GreatAndaman_100BP.SG MA1 -0.316
  675. gendstat: Indian_GreatAndaman_100BP.SG Italy_Mesolithic.SG 1.182
  676. gendstat: DevilsGate_N.SG Yana_UP -0.217
  677. gendstat: DevilsGate_N.SG BachoKiro -1.226
  678. gendstat: DevilsGate_N.SG Nepal_Samdzong_1500BP.SG -1.019
  679. gendstat: DevilsGate_N.SG Kazakhstan_Botai_Eneolithic.SG -1.084
  680. gendstat: DevilsGate_N.SG Boncuklu_N.SG -1.295
  681. gendstat: DevilsGate_N.SG Morocco_EN.SG -0.183
  682. gendstat: DevilsGate_N.SG MA1 -1.055
  683. gendstat: DevilsGate_N.SG Italy_Mesolithic.SG 0.497
  684. gendstat: Yana_UP BachoKiro -0.993
  685. gendstat: Yana_UP Nepal_Samdzong_1500BP.SG -0.596
  686. gendstat: Yana_UP Kazakhstan_Botai_Eneolithic.SG -0.861
  687. gendstat: Yana_UP Boncuklu_N.SG -1.077
  688. gendstat: Yana_UP Morocco_EN.SG 0.002
  689. gendstat: Yana_UP MA1 -0.937
  690. gendstat: Yana_UP Italy_Mesolithic.SG 0.748
  691. gendstat: BachoKiro Nepal_Samdzong_1500BP.SG 0.465
  692. gendstat: BachoKiro Kazakhstan_Botai_Eneolithic.SG 0.203
  693. gendstat: BachoKiro Boncuklu_N.SG -0.022
  694. gendstat: BachoKiro Morocco_EN.SG 0.862
  695. gendstat: BachoKiro MA1 -0.088
  696. gendstat: BachoKiro Italy_Mesolithic.SG 1.638
  697. gendstat: Nepal_Samdzong_1500BP.SG Kazakhstan_Botai_Eneolithic.SG -0.274
  698. gendstat: Nepal_Samdzong_1500BP.SG Boncuklu_N.SG -0.529
  699. gendstat: Nepal_Samdzong_1500BP.SG Morocco_EN.SG 0.504
  700. gendstat: Nepal_Samdzong_1500BP.SG MA1 -0.482
  701. gendstat: Nepal_Samdzong_1500BP.SG Italy_Mesolithic.SG 1.281
  702. gendstat: Kazakhstan_Botai_Eneolithic.SG Boncuklu_N.SG -0.253
  703. gendstat: Kazakhstan_Botai_Eneolithic.SG Morocco_EN.SG 0.709
  704. gendstat: Kazakhstan_Botai_Eneolithic.SG MA1 -0.292
  705. gendstat: Kazakhstan_Botai_Eneolithic.SG Italy_Mesolithic.SG 1.585
  706. gendstat: Boncuklu_N.SG Morocco_EN.SG 0.949
  707. gendstat: Boncuklu_N.SG MA1 -0.075
  708. gendstat: Boncuklu_N.SG Italy_Mesolithic.SG 1.948
  709. gendstat: Morocco_EN.SG MA1 -0.785
  710. gendstat: Morocco_EN.SG Italy_Mesolithic.SG 0.640
  711. gendstat: MA1 Italy_Mesolithic.SG 1.509
  712.  
  713.  
  714.  
  715.  
  716.  
  717. left pops:
  718. Iran_N
  719. CHG.SG
  720. ZlatyKun
  721. Kenya_PastoralIA
  722. Tyumen_HG
  723.  
  724. right pops:
  725. Eastern_Euro_UP.SG
  726. Cameroon_SMA.SG
  727. South_Africa_400BP.SG
  728. Mota
  729. South_Africa_HG
  730. Indian_GreatAndaman_100BP.SG
  731. DevilsGate_N.SG
  732. Yana_UP
  733. BachoKiro
  734. Nepal_Samdzong_1500BP.SG
  735. Kazakhstan_Botai_Eneolithic.SG
  736. Boncuklu_N.SG
  737. Morocco_EN.SG
  738. MA1
  739. Italy_Mesolithic.SG
  740.  
  741. 0 Iran_N 4
  742. 1 CHG.SG 2
  743. 2 ZlatyKun 1
  744. 3 Kenya_PastoralIA 3
  745. 4 Tyumen_HG 2
  746. 5 Eastern_Euro_UP.SG 3
  747. 6 Cameroon_SMA.SG 3
  748. 7 South_Africa_400BP.SG 4
  749. 8 Mota 1
  750. 9 South_Africa_HG 4
  751. 10 Indian_GreatAndaman_100BP.SG 1
  752. 11 DevilsGate_N.SG 4
  753. 12 Yana_UP 2
  754. 13 BachoKiro 3
  755. 14 Nepal_Samdzong_1500BP.SG 3
  756. 15 Kazakhstan_Botai_Eneolithic.SG 3
  757. 16 Boncuklu_N.SG 6
  758. 17 Morocco_EN.SG 3
  759. 18 MA1 1
  760. 19 Italy_Mesolithic.SG 3
  761. jackknife block size: 0.050
  762. snps: 1150457 indivs: 56
  763. number of blocks for block jackknife: 714
  764. ## ncols: 1150457
  765. coverage: Iran_N 1002874
  766. coverage: CHG.SG 1134595
  767. coverage: ZlatyKun 1120502
  768. coverage: Kenya_PastoralIA 654056
  769. coverage: Tyumen_HG 799008
  770. coverage: Eastern_Euro_UP.SG 1150149
  771. coverage: Cameroon_SMA.SG 1149654
  772. coverage: South_Africa_400BP.SG 1150180
  773. coverage: Mota 1134612
  774. coverage: South_Africa_HG 1135129
  775. coverage: Indian_GreatAndaman_100BP.SG 1133183
  776. coverage: DevilsGate_N.SG 1134715
  777. coverage: Yana_UP 1135189
  778. coverage: BachoKiro 990561
  779. coverage: Nepal_Samdzong_1500BP.SG 1149327
  780. coverage: Kazakhstan_Botai_Eneolithic.SG 1149869
  781. coverage: Boncuklu_N.SG 1138952
  782. coverage: Morocco_EN.SG 653097
  783. coverage: MA1 796065
  784. coverage: Italy_Mesolithic.SG 1141309
  785. Effective number of blocks: 626.432
  786. numsnps used: 350226
  787. codimension 1
  788. f4info:
  789. f4rank: 3 dof: 11 chisq: 9.542 tail: 0.572006884 dofdiff: 13 chisqdiff: -9.542 taildiff: 1
  790. B:
  791. scale 1.000 1.000 1.000
  792. Cameroon_SMA.SG 1.796 0.098 -0.049
  793. South_Africa_400BP.SG 1.792 0.114 -0.433
  794. Mota 1.662 -0.063 0.011
  795. South_Africa_HG 1.880 0.066 -0.030
  796. Indian_GreatAndaman_100BP.SG 0.128 0.141 1.400
  797. DevilsGate_N.SG 0.073 0.286 1.092
  798. Yana_UP -0.032 0.247 0.460
  799. BachoKiro 0.268 -0.143 1.958
  800. Nepal_Samdzong_1500BP.SG 0.031 0.360 1.281
  801. Kazakhstan_Botai_Eneolithic.SG -0.523 2.851 -1.059
  802. Boncuklu_N.SG 0.037 -0.922 -1.432
  803. Morocco_EN.SG 0.834 -0.160 -0.771
  804. MA1 -0.442 2.156 -0.731
  805. Italy_Mesolithic.SG -0.056 0.077 -0.818
  806. A:
  807. scale 251.842 708.709 1591.294
  808. CHG.SG -0.186 -0.198 -0.709
  809. ZlatyKun 0.275 0.075 1.863
  810. Kenya_PastoralIA 1.913 0.610 -0.147
  811. Tyumen_HG -0.480 1.893 -0.087
  812.  
  813.  
  814. full rank
  815. f4info:
  816. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 9.542 taildiff: 0.572006884
  817. B:
  818. scale 1125.503 593.591 131.264 280.592
  819. Cameroon_SMA.SG -1.364 1.325 1.835 -0.795
  820. South_Africa_400BP.SG -1.428 0.956 1.822 -0.826
  821. Mota -1.712 1.052 1.664 -0.925
  822. South_Africa_HG -1.457 1.355 1.913 -0.875
  823. Indian_GreatAndaman_100BP.SG -0.864 1.230 0.144 0.079
  824. DevilsGate_N.SG -0.682 0.980 0.118 0.222
  825. Yana_UP -0.009 0.526 0.030 0.301
  826. BachoKiro -1.408 1.534 0.235 -0.252
  827. Nepal_Samdzong_1500BP.SG -0.730 1.075 0.082 0.303
  828. Kazakhstan_Botai_Eneolithic.SG -0.024 -0.838 -0.175 2.489
  829. Boncuklu_N.SG 0.828 -0.972 -0.040 -0.644
  830. Morocco_EN.SG -0.156 0.152 0.854 -0.485
  831. MA1 0.000 -0.557 -0.158 1.967
  832. Italy_Mesolithic.SG 0.779 -0.380 0.004 0.216
  833. A:
  834. scale 2.000 2.000 2.000 2.000
  835. CHG.SG 2.000 0.000 0.000 0.000
  836. ZlatyKun 0.000 2.000 0.000 0.000
  837. Kenya_PastoralIA 0.000 0.000 2.000 0.000
  838. Tyumen_HG 0.000 0.000 0.000 2.000
  839.  
  840.  
  841. best coefficients: 0.659 0.256 0.039 0.046
  842. Jackknife mean: 0.657915431 0.256858537 0.038857134 0.046368898
  843. std. errors: 0.039 0.039 0.015 0.019
  844.  
  845. error covariance (* 1,000,000)
  846. 1483 -1143 76 -416
  847. -1143 1531 -378 -9
  848. 76 -378 232 69
  849. -416 -9 69 356
  850.  
  851.  
  852. summ: Iran_N 4 0.572007 0.658 0.257 0.039 0.046 1483 -1143 76 -416 1531 ...
  853. -378 -9 232 69 356
  854.  
  855. fixed pat wt dof chisq tail prob
  856. 0000 0 11 9.542 0.572007 0.659 0.256 0.039 0.046
  857. 0001 1 12 15.846 0.198409 0.716 0.254 0.030 0.000
  858. 0010 1 12 15.459 0.217279 0.646 0.319 0.000 0.035
  859. 0100 1 12 50.402 1.18694e-06 0.872 0.000 0.096 0.032
  860. 1000 1 12 174.027 0 0.000 0.925 -0.069 0.143 infeasible
  861. 0011 2 13 19.681 0.103461 0.693 0.307 0.000 0.000
  862. 0101 2 13 50.742 2.22166e-06 0.910 0.000 0.090 0.000
  863. 0110 2 13 100.919 1.10053e-15 1.035 0.000 0.000 -0.035 infeasible
  864. 1001 2 13 208.569 0 0.000 1.138 -0.138 0.000 infeasible
  865. 1010 2 13 180.950 0 0.000 0.833 0.000 0.167
  866. 1100 2 13 816.021 0 0.000 0.000 0.381 0.619
  867. 0111 3 14 98.543 9.01404e-15 1.000 0.000 0.000 0.000
  868. 1011 3 14 241.495 0 0.000 1.000 0.000 0.000
  869. 1101 3 14 2449.229 0 0.000 0.000 1.000 0.000
  870. 1110 3 14 1609.567 0 0.000 0.000 0.000 1.000
  871. best pat: 0000 0.572007 - -
  872. best pat: 0010 0.217279 chi(nested): 5.917 p-value for nested model: 0.0149924
  873. best pat: 0011 0.103461 chi(nested): 4.222 p-value for nested model: 0.0399132
  874. best pat: 0111 9.01404e-15 chi(nested): 78.863 p-value for nested model: 6.65864e-19
  875.  
  876. coeffs: 0.659 0.256 0.039 0.046
  877.  
  878. ## dscore:: f_4(Base, Fit, Rbase, right2)
  879. ## genstat:: f_4(Base, Fit, right1, right2)
  880.  
  881. details: CHG.SG Cameroon_SMA.SG -0.001212 -3.791602
  882. details: ZlatyKun Cameroon_SMA.SG 0.002232 5.230555
  883. details: Kenya_PastoralIA Cameroon_SMA.SG 0.013982 34.185285
  884. details: Tyumen_HG Cameroon_SMA.SG -0.002835 -7.438867
  885. dscore: Cameroon_SMA.SG f4: 0.000187 Z: 0.662791
  886.  
  887. details: CHG.SG South_Africa_400BP.SG -0.001269 -4.137324
  888. details: ZlatyKun South_Africa_400BP.SG 0.001611 3.971171
  889. details: Kenya_PastoralIA South_Africa_400BP.SG 0.013880 36.269133
  890. details: Tyumen_HG South_Africa_400BP.SG -0.002945 -8.060133
  891. dscore: South_Africa_400BP.SG f4: -0.000019 Z: -0.070387
  892.  
  893. details: CHG.SG Mota -0.001521 -4.031277
  894. details: ZlatyKun Mota 0.001773 3.646021
  895. details: Kenya_PastoralIA Mota 0.012676 26.671966
  896. details: Tyumen_HG Mota -0.003295 -7.453881
  897. dscore: Mota f4: -0.000207 Z: -0.628480
  898.  
  899. details: CHG.SG South_Africa_HG -0.001294 -3.951326
  900. details: ZlatyKun South_Africa_HG 0.002282 5.279470
  901. details: Kenya_PastoralIA South_Africa_HG 0.014573 35.724595
  902. details: Tyumen_HG South_Africa_HG -0.003120 -8.060068
  903. dscore: South_Africa_HG f4: 0.000155 Z: 0.546339
  904.  
  905. details: CHG.SG Indian_GreatAndaman_100BP.SG -0.000767 -1.999290
  906. details: ZlatyKun Indian_GreatAndaman_100BP.SG 0.002073 4.345669
  907. details: Kenya_PastoralIA Indian_GreatAndaman_100BP.SG 0.001098 2.685776
  908. details: Tyumen_HG Indian_GreatAndaman_100BP.SG 0.000283 0.628524
  909. dscore: Indian_GreatAndaman_100BP.SG f4: 0.000081 Z: 0.242892
  910.  
  911. details: CHG.SG DevilsGate_N.SG -0.000606 -1.890449
  912. details: ZlatyKun DevilsGate_N.SG 0.001651 4.004398
  913. details: Kenya_PastoralIA DevilsGate_N.SG 0.000899 2.594092
  914. details: Tyumen_HG DevilsGate_N.SG 0.000792 2.107944
  915. dscore: DevilsGate_N.SG f4: 0.000095 Z: 0.341645
  916.  
  917. details: CHG.SG Yana_UP -0.000008 -0.026437
  918. details: ZlatyKun Yana_UP 0.000886 2.299537
  919. details: Kenya_PastoralIA Yana_UP 0.000227 0.675517
  920. details: Tyumen_HG Yana_UP 0.001074 2.833315
  921. dscore: Yana_UP f4: 0.000280 Z: 1.088663
  922.  
  923. details: CHG.SG BachoKiro -0.001251 -3.858220
  924. details: ZlatyKun BachoKiro 0.002585 5.921689
  925. details: Kenya_PastoralIA BachoKiro 0.001790 4.793319
  926. details: Tyumen_HG BachoKiro -0.000898 -2.305794
  927. dscore: BachoKiro f4: -0.000135 Z: -0.494451
  928.  
  929. details: CHG.SG Nepal_Samdzong_1500BP.SG -0.000648 -2.224113
  930. details: ZlatyKun Nepal_Samdzong_1500BP.SG 0.001812 4.632598
  931. details: Kenya_PastoralIA Nepal_Samdzong_1500BP.SG 0.000628 1.929646
  932. details: Tyumen_HG Nepal_Samdzong_1500BP.SG 0.001081 2.933908
  933. dscore: Nepal_Samdzong_1500BP.SG f4: 0.000110 Z: 0.440807
  934.  
  935. details: CHG.SG Kazakhstan_Botai_Eneolithic.SG -0.000022 -0.071527
  936. details: ZlatyKun Kazakhstan_Botai_Eneolithic.SG -0.001412 -4.003139
  937. details: Kenya_PastoralIA Kazakhstan_Botai_Eneolithic.SG -0.001337 -4.172046
  938. details: Tyumen_HG Kazakhstan_Botai_Eneolithic.SG 0.008870 24.534289
  939. dscore: Kazakhstan_Botai_Eneolithic.SG f4: -0.000019 Z: -0.075863
  940.  
  941. details: CHG.SG Boncuklu_N.SG 0.000736 2.523874
  942. details: ZlatyKun Boncuklu_N.SG -0.001638 -4.752524
  943. details: Kenya_PastoralIA Boncuklu_N.SG -0.000302 -0.947274
  944. details: Tyumen_HG Boncuklu_N.SG -0.002296 -7.066020
  945. dscore: Boncuklu_N.SG f4: -0.000052 Z: -0.211216
  946.  
  947. details: CHG.SG Morocco_EN.SG -0.000139 -0.385683
  948. details: ZlatyKun Morocco_EN.SG 0.000256 0.559686
  949. details: Kenya_PastoralIA Morocco_EN.SG 0.006507 15.416593
  950. details: Tyumen_HG Morocco_EN.SG -0.001729 -4.104334
  951. dscore: Morocco_EN.SG f4: 0.000148 Z: 0.480736
  952.  
  953. details: CHG.SG MA1 0.000000 0.000868
  954. details: ZlatyKun MA1 -0.000939 -1.990015
  955. details: Kenya_PastoralIA MA1 -0.001204 -3.031899
  956. details: Tyumen_HG MA1 0.007011 14.917406
  957. dscore: MA1 f4: 0.000036 Z: 0.114187
  958.  
  959. details: CHG.SG Italy_Mesolithic.SG 0.000692 2.191655
  960. details: ZlatyKun Italy_Mesolithic.SG -0.000640 -1.737939
  961. details: Kenya_PastoralIA Italy_Mesolithic.SG 0.000031 0.087678
  962. details: Tyumen_HG Italy_Mesolithic.SG 0.000770 2.090109
  963. dscore: Italy_Mesolithic.SG f4: 0.000329 Z: 1.231344
  964.  
  965. gendstat: Eastern_Euro_UP.SG Cameroon_SMA.SG 0.663
  966. gendstat: Eastern_Euro_UP.SG South_Africa_400BP.SG -0.070
  967. gendstat: Eastern_Euro_UP.SG Mota -0.628
  968. gendstat: Eastern_Euro_UP.SG South_Africa_HG 0.546
  969. gendstat: Eastern_Euro_UP.SG Indian_GreatAndaman_100BP.SG 0.243
  970. gendstat: Eastern_Euro_UP.SG DevilsGate_N.SG 0.342
  971. gendstat: Eastern_Euro_UP.SG Yana_UP 1.089
  972. gendstat: Eastern_Euro_UP.SG BachoKiro -0.494
  973. gendstat: Eastern_Euro_UP.SG Nepal_Samdzong_1500BP.SG 0.441
  974. gendstat: Eastern_Euro_UP.SG Kazakhstan_Botai_Eneolithic.SG -0.076
  975. gendstat: Eastern_Euro_UP.SG Boncuklu_N.SG -0.211
  976. gendstat: Eastern_Euro_UP.SG Morocco_EN.SG 0.481
  977. gendstat: Eastern_Euro_UP.SG MA1 0.114
  978. gendstat: Eastern_Euro_UP.SG Italy_Mesolithic.SG 1.231
  979. gendstat: Cameroon_SMA.SG South_Africa_400BP.SG -1.081
  980. gendstat: Cameroon_SMA.SG Mota -1.420
  981. gendstat: Cameroon_SMA.SG South_Africa_HG -0.163
  982. gendstat: Cameroon_SMA.SG Indian_GreatAndaman_100BP.SG -0.314
  983. gendstat: Cameroon_SMA.SG DevilsGate_N.SG -0.325
  984. gendstat: Cameroon_SMA.SG Yana_UP 0.341
  985. gendstat: Cameroon_SMA.SG BachoKiro -1.146
  986. gendstat: Cameroon_SMA.SG Nepal_Samdzong_1500BP.SG -0.276
  987. gendstat: Cameroon_SMA.SG Kazakhstan_Botai_Eneolithic.SG -0.732
  988. gendstat: Cameroon_SMA.SG Boncuklu_N.SG -0.920
  989. gendstat: Cameroon_SMA.SG Morocco_EN.SG -0.129
  990. gendstat: Cameroon_SMA.SG MA1 -0.436
  991. gendstat: Cameroon_SMA.SG Italy_Mesolithic.SG 0.484
  992. gendstat: South_Africa_400BP.SG Mota -0.725
  993. gendstat: South_Africa_400BP.SG South_Africa_HG 0.942
  994. gendstat: South_Africa_400BP.SG Indian_GreatAndaman_100BP.SG 0.308
  995. gendstat: South_Africa_400BP.SG DevilsGate_N.SG 0.411
  996. gendstat: South_Africa_400BP.SG Yana_UP 1.101
  997. gendstat: South_Africa_400BP.SG BachoKiro -0.432
  998. gendstat: South_Africa_400BP.SG Nepal_Samdzong_1500BP.SG 0.493
  999. gendstat: South_Africa_400BP.SG Kazakhstan_Botai_Eneolithic.SG -0.002
  1000. gendstat: South_Africa_400BP.SG Boncuklu_N.SG -0.135
  1001. gendstat: South_Africa_400BP.SG Morocco_EN.SG 0.590
  1002. gendstat: South_Africa_400BP.SG MA1 0.165
  1003. gendstat: South_Africa_400BP.SG Italy_Mesolithic.SG 1.230
  1004. gendstat: Mota South_Africa_HG 1.329
  1005. gendstat: Mota Indian_GreatAndaman_100BP.SG 0.739
  1006. gendstat: Mota DevilsGate_N.SG 0.914
  1007. gendstat: Mota Yana_UP 1.476
  1008. gendstat: Mota BachoKiro 0.212
  1009. gendstat: Mota Nepal_Samdzong_1500BP.SG 0.959
  1010. gendstat: Mota Kazakhstan_Botai_Eneolithic.SG 0.575
  1011. gendstat: Mota Boncuklu_N.SG 0.504
  1012. gendstat: Mota Morocco_EN.SG 1.068
  1013. gendstat: Mota MA1 0.653
  1014. gendstat: Mota Italy_Mesolithic.SG 1.506
  1015. gendstat: South_Africa_HG Indian_GreatAndaman_100BP.SG -0.223
  1016. gendstat: South_Africa_HG DevilsGate_N.SG -0.218
  1017. gendstat: South_Africa_HG Yana_UP 0.453
  1018. gendstat: South_Africa_HG BachoKiro -1.053
  1019. gendstat: South_Africa_HG Nepal_Samdzong_1500BP.SG -0.168
  1020. gendstat: South_Africa_HG Kazakhstan_Botai_Eneolithic.SG -0.633
  1021. gendstat: South_Africa_HG Boncuklu_N.SG -0.813
  1022. gendstat: South_Africa_HG Morocco_EN.SG -0.023
  1023. gendstat: South_Africa_HG MA1 -0.348
  1024. gendstat: South_Africa_HG Italy_Mesolithic.SG 0.594
  1025. gendstat: Indian_GreatAndaman_100BP.SG DevilsGate_N.SG 0.045
  1026. gendstat: Indian_GreatAndaman_100BP.SG Yana_UP 0.592
  1027. gendstat: Indian_GreatAndaman_100BP.SG BachoKiro -0.638
  1028. gendstat: Indian_GreatAndaman_100BP.SG Nepal_Samdzong_1500BP.SG 0.098
  1029. gendstat: Indian_GreatAndaman_100BP.SG Kazakhstan_Botai_Eneolithic.SG -0.318
  1030. gendstat: Indian_GreatAndaman_100BP.SG Boncuklu_N.SG -0.405
  1031. gendstat: Indian_GreatAndaman_100BP.SG Morocco_EN.SG 0.174
  1032. gendstat: Indian_GreatAndaman_100BP.SG MA1 -0.120
  1033. gendstat: Indian_GreatAndaman_100BP.SG Italy_Mesolithic.SG 0.702
  1034. gendstat: DevilsGate_N.SG Yana_UP 0.686
  1035. gendstat: DevilsGate_N.SG BachoKiro -0.803
  1036. gendstat: DevilsGate_N.SG Nepal_Samdzong_1500BP.SG 0.071
  1037. gendstat: DevilsGate_N.SG Kazakhstan_Botai_Eneolithic.SG -0.422
  1038. gendstat: DevilsGate_N.SG Boncuklu_N.SG -0.541
  1039. gendstat: DevilsGate_N.SG Morocco_EN.SG 0.163
  1040. gendstat: DevilsGate_N.SG MA1 -0.170
  1041. gendstat: DevilsGate_N.SG Italy_Mesolithic.SG 0.753
  1042. gendstat: Yana_UP BachoKiro -1.481
  1043. gendstat: Yana_UP Nepal_Samdzong_1500BP.SG -0.648
  1044. gendstat: Yana_UP Kazakhstan_Botai_Eneolithic.SG -1.179
  1045. gendstat: Yana_UP Boncuklu_N.SG -1.282
  1046. gendstat: Yana_UP Morocco_EN.SG -0.409
  1047. gendstat: Yana_UP MA1 -0.752
  1048. gendstat: Yana_UP Italy_Mesolithic.SG 0.177
  1049. gendstat: BachoKiro Nepal_Samdzong_1500BP.SG 0.922
  1050. gendstat: BachoKiro Kazakhstan_Botai_Eneolithic.SG 0.417
  1051. gendstat: BachoKiro Boncuklu_N.SG 0.302
  1052. gendstat: BachoKiro Morocco_EN.SG 0.862
  1053. gendstat: BachoKiro MA1 0.488
  1054. gendstat: BachoKiro Italy_Mesolithic.SG 1.555
  1055. gendstat: Nepal_Samdzong_1500BP.SG Kazakhstan_Botai_Eneolithic.SG -0.537
  1056. gendstat: Nepal_Samdzong_1500BP.SG Boncuklu_N.SG -0.673
  1057. gendstat: Nepal_Samdzong_1500BP.SG Morocco_EN.SG 0.121
  1058. gendstat: Nepal_Samdzong_1500BP.SG MA1 -0.235
  1059. gendstat: Nepal_Samdzong_1500BP.SG Italy_Mesolithic.SG 0.758
  1060. gendstat: Kazakhstan_Botai_Eneolithic.SG Boncuklu_N.SG -0.134
  1061. gendstat: Kazakhstan_Botai_Eneolithic.SG Morocco_EN.SG 0.528
  1062. gendstat: Kazakhstan_Botai_Eneolithic.SG MA1 0.187
  1063. gendstat: Kazakhstan_Botai_Eneolithic.SG Italy_Mesolithic.SG 1.259
  1064. gendstat: Boncuklu_N.SG Morocco_EN.SG 0.659
  1065. gendstat: Boncuklu_N.SG MA1 0.275
  1066. gendstat: Boncuklu_N.SG Italy_Mesolithic.SG 1.474
  1067. gendstat: Morocco_EN.SG MA1 -0.289
  1068. gendstat: Morocco_EN.SG Italy_Mesolithic.SG 0.544
  1069. gendstat: MA1 Italy_Mesolithic.SG 0.852
  1070.  
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement
Public Pastes
Advertisement
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!