[  0%] Creating directories for 'ARPREC'
[  0%] Performing download step (download, verify and extract) for 'ARPREC'
-- downloading...
     src='http://crd.lbl.gov/~dhbailey/mpdist/arprec-2.2.16.tar.gz'
     dst='/home/f0z/libraries/shogun/third_party/ARPREC/arprec-2.2.16.tar.gz'
     timeout='none'
-- downloading... done
-- verifying file...
     file='/home/f0z/libraries/shogun/third_party/ARPREC/arprec-2.2.16.tar.gz'
-- verifying file... done
-- extracting...
     src='/home/f0z/libraries/shogun/third_party/ARPREC/arprec-2.2.16.tar.gz'
     dst='/home/f0z/libraries/shogun/ARPREC/src/ARPREC'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[  0%] No patch step for 'ARPREC'
[  0%] No update step for 'ARPREC'
[  0%] Performing configure step for 'ARPREC'
configuring arprec 2.2.13...
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking if commonly used function is to be inlined... yes
checking if debugging code is to be enabled... no
checking for xlC_r... no
checking for xlC... no
checking for icpc... no
checking for pathCC... no
checking for pgCC... no
checking for cxx... no
checking for aCC... no
checking for CC... no
checking for cc++... no
checking for FCC... no
checking for KCC... no
checking for RCC... no
checking for c++... c++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of c++... gcc3
checking for gcc... c++
checking whether we are using the GNU C compiler... yes
checking whether c++ accepts -g... yes
checking for c++ option to accept ISO C89... unsupported
checking dependency style of c++... gcc3
checking for xlf95... no
checking for ifort... no
checking for pathf95... no
checking for f95... f95
checking whether we are using the GNU Fortran compiler... yes
checking whether f95 accepts -g... yes
checking how to get verbose linking output from f95... -v
checking for Fortran libraries of f95...  -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lgfortran -lm -lquadmath
checking for Fortran flag needed to allow free-form source... -ffree-form
checking whether extra library is needed to link Fortran and C++... none
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking for alternate main to link with Fortran libraries... main
checking fortran 90 modules inclusion flag...
checking flags needed for unescaped backslash in strings... none
checking fortran 90 modules naming style...
checking for etime... etime
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by c++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 3458764513820540925
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from c++ object... ok
checking how to run the C preprocessor... c++ -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether c++ accepts -g... (cached) yes
checking dependency style of c++... (cached) gcc3
checking how to run the C++ preprocessor... c++ -E
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether f95 accepts -g... (cached) yes
checking for objdir... .libs
checking if c++ supports -fno-rtti -fno-exceptions... yes
checking for c++ option to produce PIC... -fPIC -DPIC
checking if c++ PIC flag -fPIC -DPIC works... yes
checking if c++ static flag -static works... yes
checking if c++ supports -c -o file.o... yes
checking if c++ supports -c -o file.o... (cached) yes
checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for ld used by c++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for c++ option to produce PIC... -fPIC -DPIC
checking if c++ PIC flag -fPIC -DPIC works... yes
checking if c++ static flag -static works... yes
checking if c++ supports -c -o file.o... yes
checking if c++ supports -c -o file.o... (cached) yes
checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for f95 option to produce PIC... -fPIC
checking if f95 PIC flag -fPIC works... yes
checking if f95 static flag -static works... yes
checking if f95 supports -c -o file.o... yes
checking if f95 supports -c -o file.o... (cached) yes
checking whether the f95 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking fp.h usability... no
checking fp.h presence... no
checking for fp.h... no
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking whether the compiler supports basic templates... yes
checking whether x86 FPU control code is needed... yes
checking fpu_control.h usability... yes
checking fpu_control.h presence... yes
checking for fpu_control.h... yes
checking for drand48... yes
checking for copysign... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating tests/Makefile
config.status: creating include/Makefile
config.status: creating fortran/Makefile
config.status: creating toolkit/Makefile
config.status: creating arprec-config
config.status: creating fortran/second.f
config.status: creating toolkit/second.f
config.status: creating config.h
config.status: config.h is unchanged
config.status: creating include/arprec/arprec_config.h
config.status: include/arprec/arprec_config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands

Using
   C++ Compiler   = c++
   C++ Flags      = -O2 -Wall -DHAVE_CONFIG_H
   F90 Compiler   = f95
   F90 Flags      = -O2 -ffree-form
   F90 Libs       =  -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lgfortran -lm -lquadmath
   enable fortran = yes
   enable inline  = yes
   enable x86 fix = yes
   enable debug   = no
   fma            = none
   fms            = none
[  0%] Performing build step for 'ARPREC'
/home/f0z/libraries/shogun/ARPREC/src/ARPREC/config/missing: line 54: aclocal-1.11: command not found
WARNING: `aclocal-1.11' is missing on your system.  You should only need it if
         you modified `acinclude.m4' or `configure.ac'.  You might want
         to install the `Automake' and `Perl' packages.  Grab them from
         any GNU archive site.
 cd /home/f0z/libraries/shogun/ARPREC/src/ARPREC && /bin/bash /home/f0z/libraries/shogun/ARPREC/src/ARPREC/config/missing --run automake-1.11 --gnu
/home/f0z/libraries/shogun/ARPREC/src/ARPREC/config/missing: line 54: automake-1.11: command not found
WARNING: `automake-1.11' is missing on your system.  You should only need it if
         you modified `Makefile.am', `acinclude.m4' or `configure.ac'.
         You might want to install the `Automake' and `Perl' packages.
         Grab them from any GNU archive site.
/home/f0z/libraries/shogun/ARPREC/src/ARPREC/config/missing: line 54: autoconf: command not found
WARNING: `autoconf' is missing on your system.  You should only need it if
         you modified `configure.ac'.  You might want to install the
         `Autoconf' and `GNU m4' packages.  Grab them from any GNU
         archive site.
running CONFIG_SHELL=/bin/bash /bin/bash /home/f0z/libraries/shogun/ARPREC/src/ARPREC/configure --includedir=/home/f0z/libraries/shogun/third_party/include/arprec --libdir=/home/f0z/libraries/shogun/third_party/libs/arprec --disable-shared --with-pic --no-create --no-recursion
configuring arprec 2.2.13...
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking if commonly used function is to be inlined... yes
checking if debugging code is to be enabled... no
checking for xlC_r... no
checking for xlC... no
checking for icpc... no
checking for pathCC... no
checking for pgCC... no
checking for cxx... no
checking for aCC... no
checking for CC... no
checking for cc++... no
checking for FCC... no
checking for KCC... no
checking for RCC... no
checking for c++... c++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of c++... gcc3
checking for gcc... c++
checking whether we are using the GNU C compiler... yes
checking whether c++ accepts -g... yes
checking for c++ option to accept ISO C89... unsupported
checking dependency style of c++... gcc3
checking for xlf95... no
checking for ifort... no
checking for pathf95... no
checking for f95... f95
checking whether we are using the GNU Fortran compiler... yes
checking whether f95 accepts -g... yes
checking how to get verbose linking output from f95... -v
checking for Fortran libraries of f95...  -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lgfortran -lm -lquadmath
checking for Fortran flag needed to allow free-form source... -ffree-form
checking whether extra library is needed to link Fortran and C++... none
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking for alternate main to link with Fortran libraries... main
checking fortran 90 modules inclusion flag...
checking flags needed for unescaped backslash in strings... none
checking fortran 90 modules naming style...
checking for etime... etime
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by c++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 3458764513820540925
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from c++ object... ok
checking how to run the C preprocessor... c++ -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether c++ accepts -g... (cached) yes
checking dependency style of c++... (cached) gcc3
checking how to run the C++ preprocessor... c++ -E
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether f95 accepts -g... (cached) yes
checking for objdir... .libs
checking if c++ supports -fno-rtti -fno-exceptions... yes
checking for c++ option to produce PIC... -fPIC -DPIC
checking if c++ PIC flag -fPIC -DPIC works... yes
checking if c++ static flag -static works... yes
checking if c++ supports -c -o file.o... yes
checking if c++ supports -c -o file.o... (cached) yes
checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for ld used by c++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for c++ option to produce PIC... -fPIC -DPIC
checking if c++ PIC flag -fPIC -DPIC works... yes
checking if c++ static flag -static works... yes
checking if c++ supports -c -o file.o... yes
checking if c++ supports -c -o file.o... (cached) yes
checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for f95 option to produce PIC... -fPIC
checking if f95 PIC flag -fPIC works... yes
checking if f95 static flag -static works... yes
checking if f95 supports -c -o file.o... yes
checking if f95 supports -c -o file.o... (cached) yes
checking whether the f95 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking fp.h usability... no
checking fp.h presence... no
checking for fp.h... no
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking whether the compiler supports basic templates... yes
checking whether x86 FPU control code is needed... yes
checking fpu_control.h usability... yes
checking fpu_control.h presence... yes
checking for fpu_control.h... yes
checking for drand48... yes
checking for copysign... yes
configure: creating ./config.status

Using
   C++ Compiler   = c++
   C++ Flags      = -O2 -Wall -DHAVE_CONFIG_H
   F90 Compiler   = f95
   F90 Flags      = -O2 -ffree-form
   F90 Libs       =  -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lgfortran -lm -lquadmath
   enable fortran = yes
   enable inline  = yes
   enable x86 fix = yes
   enable debug   = no
   fma            = none
   fms            = none
 /bin/bash ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating tests/Makefile
config.status: creating include/Makefile
config.status: creating fortran/Makefile
config.status: creating toolkit/Makefile
config.status: creating arprec-config
config.status: creating fortran/second.f
config.status: creating toolkit/second.f
config.status: creating config.h
config.status: config.h is unchanged
config.status: creating include/arprec/arprec_config.h
config.status: include/arprec/arprec_config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
/home/f0z/libraries/shogun/ARPREC/src/ARPREC/config/missing: line 54: autoheader: command not found
WARNING: `autoheader' is missing on your system.  You should only need it if
         you modified `acconfig.h' or `configure.ac'.  You might want
         to install the `Autoconf' and `GNU m4' packages.  Grab them
         from any GNU archive site.
config.status: creating config.h
config.status: config.h is unchanged
Making all in src
Making all in tests
Making all in include
Making all in fortran
Making all in toolkit
[  0%] Performing install step for 'ARPREC'
 /bin/bash ../libtool   --mode=install /usr/bin/install -c   libarprec.la '/home/f0z/libraries/shogun/third_party/libs/arprec'
libtool: install: /usr/bin/install -c .libs/libarprec.lai /home/f0z/libraries/shogun/third_party/libs/arprec/libarprec.la
libtool: install: /usr/bin/install -c .libs/libarprec.a /home/f0z/libraries/shogun/third_party/libs/arprec/libarprec.a
libtool: install: chmod 644 /home/f0z/libraries/shogun/third_party/libs/arprec/libarprec.a
libtool: install: ranlib /home/f0z/libraries/shogun/third_party/libs/arprec/libarprec.a
libtool: finish: PATH="/home/f0z/torch/install/bin:/home/f0z/torch/install/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/local/cuda/bin:/home/f0z/libraries/mosek/7/tools/platform/linux64x86/bin/:/sbin" ldconfig -n /home/f0z/libraries/shogun/third_party/libs/arprec
----------------------------------------------------------------------
Libraries have been installed in:
   /home/f0z/libraries/shogun/third_party/libs/arprec

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/mkdir -p '/home/f0z/libraries/shogun/third_party/include/arprec/arprec'
 /usr/bin/install -c -m 644  /home/f0z/libraries/shogun/ARPREC/src/ARPREC/include/arprec/c_mp.h /home/f0z/libraries/shogun/ARPREC/src/ARPREC/include/arprec/fpu.h /home/f0z/libraries/shogun/ARPREC/src/ARPREC/include/arprec/mp.h /home/f0z/libraries/shogun/ARPREC/src/ARPREC/include/arprec/mp_complex.h /home/f0z/libraries/shogun/ARPREC/src/ARPREC/include/arprec/mp_complex_inline.h /home/f0z/libraries/shogun/ARPREC/src/ARPREC/include/arprec/mp_complex_temp.h /home/f0z/libraries/shogun/ARPREC/src/ARPREC/include/arprec/mp_inline.h /home/f0z/libraries/shogun/ARPREC/src/ARPREC/include/arprec/mp_int.h /home/f0z/libraries/shogun/ARPREC/src/ARPREC/include/arprec/mp_int_inline.h /home/f0z/libraries/shogun/ARPREC/src/ARPREC/include/arprec/mp_int_temp.h /home/f0z/libraries/shogun/ARPREC/src/ARPREC/include/arprec/mp_real.h /home/f0z/libraries/shogun/ARPREC/src/ARPREC/include/arprec/mp_real_temp.h /home/f0z/libraries/shogun/ARPREC/src/ARPREC/include/arprec/double_inline.h '/home/f0z/libraries/shogun/third_party/include/arprec/arprec'
/bin/mkdir -p '/home/f0z/libraries/shogun/third_party/include/arprec/arprec'
 /usr/bin/install -c -m 644  arprec/arprec_config.h '/home/f0z/libraries/shogun/third_party/include/arprec/arprec'
[  0%] Completed 'ARPREC'
[  0%] Built target ARPREC
[  0%] Creating directories for 'COLPACK'
[  1%] Performing download step (download, verify and extract) for 'COLPACK'
-- downloading...
     src='http://cscapes.cs.purdue.edu/download/ColPack/ColPack-1.0.9.tar.gz'
     dst='/home/f0z/libraries/shogun/third_party/COLPACK/ColPack-1.0.9.tar.gz'
     timeout='none'
-- downloading... done
-- verifying file...
     file='/home/f0z/libraries/shogun/third_party/COLPACK/ColPack-1.0.9.tar.gz'
-- verifying file... done
-- extracting...
     src='/home/f0z/libraries/shogun/third_party/COLPACK/ColPack-1.0.9.tar.gz'
     dst='/home/f0z/libraries/shogun/COLPACK/src/COLPACK'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[  1%] No patch step for 'COLPACK'
[  1%] No update step for 'COLPACK'
[  1%] Performing configure step for 'COLPACK'
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... gcc3
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 3458764513820540925
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking Build examples... checking OpenMP... configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands

-----------------------------------------------------------------------------
Configuration:

  C compiler:                       gcc
  C++ compiler:                     g++
  Linker:                           /usr/bin/ld -m elf_x86_64
  Source code location:             /home/f0z/libraries/shogun/COLPACK/src/COLPACK-build
  Install path:                     /usr/local

  CFLAGS:
  CXXFLAGS:

  Use OpenMP:                       false
  Build examples:                   false

[  1%] Performing build step for 'COLPACK'
[  1%] Performing install step for 'COLPACK'
 /bin/bash ./libtool   --mode=install /usr/bin/install -c   libColPack.la '/home/f0z/libraries/shogun/third_party/libs/ColPack'
libtool: install: /usr/bin/install -c .libs/libColPack.lai /home/f0z/libraries/shogun/third_party/libs/ColPack/libColPack.la
libtool: install: /usr/bin/install -c .libs/libColPack.a /home/f0z/libraries/shogun/third_party/libs/ColPack/libColPack.a
libtool: install: chmod 644 /home/f0z/libraries/shogun/third_party/libs/ColPack/libColPack.a
libtool: install: ranlib /home/f0z/libraries/shogun/third_party/libs/ColPack/libColPack.a
libtool: finish: PATH="/home/f0z/torch/install/bin:/home/f0z/torch/install/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/local/cuda/bin:/home/f0z/libraries/mosek/7/tools/platform/linux64x86/bin/:/sbin" ldconfig -n /home/f0z/libraries/shogun/third_party/libs/ColPack
----------------------------------------------------------------------
Libraries have been installed in:
   /home/f0z/libraries/shogun/third_party/libs/ColPack

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
  /bin/bash ./libtool   --mode=install /usr/bin/install -c ColPack '/home/f0z/libraries/shogun/COLPACK/src/COLPACK-build/progs'
libtool: install: /usr/bin/install -c ColPack /home/f0z/libraries/shogun/COLPACK/src/COLPACK-build/progs/ColPack
 /usr/bin/install -c -m 644 /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Utilities/CoutLock.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Utilities/command_line_parameter_processor.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Utilities/File.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Utilities/DisjointSets.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Utilities/current_time.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Utilities/mmio.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Utilities/Pause.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Utilities/MatrixDeallocation.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Utilities/Timer.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Utilities/StringTokenizer.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Utilities/extra.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Utilities/stat.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/BipartiteGraphPartialColoring/BipartiteGraphPartialColoringInterface.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/BipartiteGraphPartialColoring/BipartiteGraphPartialOrdering.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/BipartiteGraphPartialColoring/BipartiteGraphPartialColoring.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/BipartiteGraphBicoloring/BipartiteGraphBicoloringInterface.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/BipartiteGraphBicoloring/BipartiteGraphVertexCover.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/BipartiteGraphBicoloring/BipartiteGraphOrdering.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/BipartiteGraphBicoloring/BipartiteGraphInputOutput.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/BipartiteGraphBicoloring/BipartiteGraphBicoloring.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/BipartiteGraphBicoloring/BipartiteGraphCore.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/GraphColoring/GraphColoringInterface.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/GraphColoring/GraphInputOutput.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/GraphColoring/GraphColoring.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/GraphColoring/GraphOrdering.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/GraphColoring/GraphCore.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Recovery/JacobianRecovery2D.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Recovery/JacobianRecovery1D.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Recovery/HessianRecovery.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Recovery/RecoveryCore.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Main/Definitions.h /home/f0z/libraries/shogun/COLPACK/src/COLPACK/Main/ColPackHeaders.h '/home/f0z/libraries/shogun/third_party/include/ColPack/ColPack'
[  1%] Completed 'COLPACK'
[  1%] Built target COLPACK
[  1%] Creating directories for 'JSON'
[  1%] Performing download step (download, verify and extract) for 'JSON'
-- downloading...
     src='http://s3.amazonaws.com/json-c_releases/releases/json-c-0.11-nodoc.tar.gz'
     dst='/home/f0z/libraries/shogun/third_party/JSON/json-c-0.11-nodoc.tar.gz'
     timeout='none'
-- downloading... done
-- verifying file...
     file='/home/f0z/libraries/shogun/third_party/JSON/json-c-0.11-nodoc.tar.gz'
-- verifying file... done
-- extracting...
     src='/home/f0z/libraries/shogun/third_party/JSON/json-c-0.11-nodoc.tar.gz'
     dst='/home/f0z/libraries/shogun/JSON/src/JSON'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[  1%] No patch step for 'JSON'
[  1%] No update step for 'JSON'
[  1%] Performing configure step for 'JSON'
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make sets $(MAKE)... (cached) yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for strings.h... (cached) yes
checking syslog.h usability... yes
checking syslog.h presence... yes
checking for syslog.h... yes
checking for unistd.h... (cached) yes
checking sys/cdefs.h usability... yes
checking sys/cdefs.h presence... yes
checking for sys/cdefs.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking for inttypes.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking for vprintf... yes
checking for _doprnt... no
checking for working memcmp... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking for strcasecmp... yes
checking for strdup... yes
checking for strndup... yes
checking for strerror... yes
checking for snprintf... yes
checking for vsnprintf... yes
checking for vasprintf... yes
checking for open... yes
checking for vsyslog... yes
checking for strncasecmp... yes
checking for setlocale... yes
checking if .gnu.warning accepts long strings... no
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 3458764513820540925
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating json.pc
config.status: creating json-c.pc
config.status: creating tests/Makefile
config.status: creating json-c-uninstalled.pc
config.status: creating config.h
config.status: config.h is unchanged
config.status: creating json_config.h
config.status: json_config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
[  2%] Performing build step for 'JSON'
Making all in .
Making all in tests
[  2%] Performing install step for 'JSON'
Making install in .
 /bin/bash ./libtool   --mode=install /usr/bin/install -c   libjson-c.la libjson.la '/home/f0z/libraries/shogun/third_party/libs/json'
libtool: install: /usr/bin/install -c .libs/libjson-c.lai /home/f0z/libraries/shogun/third_party/libs/json/libjson-c.la
libtool: install: /usr/bin/install -c .libs/libjson.lai /home/f0z/libraries/shogun/third_party/libs/json/libjson.la
libtool: install: /usr/bin/install -c .libs/libjson-c.a /home/f0z/libraries/shogun/third_party/libs/json/libjson-c.a
libtool: install: chmod 644 /home/f0z/libraries/shogun/third_party/libs/json/libjson-c.a
libtool: install: ranlib /home/f0z/libraries/shogun/third_party/libs/json/libjson-c.a
libtool: install: /usr/bin/install -c .libs/libjson.a /home/f0z/libraries/shogun/third_party/libs/json/libjson.a
libtool: install: chmod 644 /home/f0z/libraries/shogun/third_party/libs/json/libjson.a
libtool: install: ranlib /home/f0z/libraries/shogun/third_party/libs/json/libjson.a
libtool: finish: PATH="/home/f0z/torch/install/bin:/home/f0z/torch/install/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/local/cuda/bin:/home/f0z/libraries/mosek/7/tools/platform/linux64x86/bin/:/sbin" ldconfig -n /home/f0z/libraries/shogun/third_party/libs/json
----------------------------------------------------------------------
Libraries have been installed in:
   /home/f0z/libraries/shogun/third_party/libs/json

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /usr/bin/install -c -m 644 /home/f0z/libraries/shogun/JSON/src/JSON/arraylist.h /home/f0z/libraries/shogun/JSON/src/JSON/bits.h /home/f0z/libraries/shogun/JSON/src/JSON/debug.h /home/f0z/libraries/shogun/JSON/src/JSON/json.h json_config.h /home/f0z/libraries/shogun/JSON/src/JSON/json_c_version.h /home/f0z/libraries/shogun/JSON/src/JSON/json_inttypes.h /home/f0z/libraries/shogun/JSON/src/JSON/json_object.h /home/f0z/libraries/shogun/JSON/src/JSON/json_object_iterator.h /home/f0z/libraries/shogun/JSON/src/JSON/json_object_private.h /home/f0z/libraries/shogun/JSON/src/JSON/json_tokener.h /home/f0z/libraries/shogun/JSON/src/JSON/json_util.h /home/f0z/libraries/shogun/JSON/src/JSON/linkhash.h /home/f0z/libraries/shogun/JSON/src/JSON/printbuf.h '/home/f0z/libraries/shogun/third_party/include/json/json-c'
 /usr/bin/install -c -m 644 json-c.pc json.pc '/home/f0z/libraries/shogun/third_party/libs/json/pkgconfig'
Making install in tests
[  2%] Completed 'JSON'
[  2%] Built target JSON
[  2%] Creating directories for 'NLopt'
[  2%] Performing download step (download, verify and extract) for 'NLopt'
-- downloading...
     src='http://ab-initio.mit.edu/nlopt/nlopt-2.3.tar.gz'
     dst='/home/f0z/libraries/shogun/third_party/NLopt/nlopt-2.3.tar.gz'
     timeout='none'
-- downloading... done
-- verifying file...
     file='/home/f0z/libraries/shogun/third_party/NLopt/nlopt-2.3.tar.gz'
-- verifying file... done
-- extracting...
     src='/home/f0z/libraries/shogun/third_party/NLopt/nlopt-2.3.tar.gz'
     dst='/home/f0z/libraries/shogun/NLopt/src/NLopt'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[  2%] No patch step for 'NLopt'
[  2%] No update step for 'NLopt'
[  2%] Performing configure step for 'NLopt'
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking for gcc option to accept ISO C99... -std=gnu99
checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) -std=gnu99
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc -std=gnu99... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 3458764513820540925
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... dlltool
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no
checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC
checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes
checking if gcc -std=gnu99 static flag -static works... yes
checking if gcc -std=gnu99 supports -c -o file.o... yes
checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes
checking whether the gcc -std=gnu99 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for ANSI C header files... (cached) yes
checking whether time.h and sys/time.h may both be included... yes
checking for unistd.h... (cached) yes
checking getopt.h usability... yes
checking getopt.h presence... yes
checking for getopt.h... yes
checking for stdint.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for C thread-local keyword... __thread
checking size of unsigned int... 4
checking size of unsigned long... 8
checking for uint32_t... yes
checking for sin in -lm... yes
checking for BSDgettimeofday... no
checking for gettimeofday... yes
checking for time... yes
checking for qsort_r... yes
checking for getpid... yes
checking for gettid syscall... yes
checking for isnan... yes
checking for isinf... yes
checking for copysign... yes
configure: WARNING: Python and Guile wrappers require --enable-shared; disabling
checking for mkoctfile... no
configure: WARNING: can't find mkoctfile: won't be able to compile GNU Octave plugin
checking for mex... mex
checking for extension of compiled mex files... configure: WARNING: mex failed to compile a simple file; won't compile Matlab plugin
checking for working HUGE_VAL... ok
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating nlopt.pc
config.status: creating api/Makefile
config.status: creating util/Makefile
config.status: creating octave/Makefile
config.status: creating direct/Makefile
config.status: creating cdirect/Makefile
config.status: creating stogo/Makefile
config.status: creating praxis/Makefile
config.status: creating lbfgs/Makefile
config.status: creating luksan/Makefile
config.status: creating crs/Makefile
config.status: creating mlsl/Makefile
config.status: creating mma/Makefile
config.status: creating cobyla/Makefile
config.status: creating newuoa/Makefile
config.status: creating neldermead/Makefile
config.status: creating auglag/Makefile
config.status: creating bobyqa/Makefile
config.status: creating isres/Makefile
config.status: creating slsqp/Makefile
config.status: creating test/Makefile
config.status: creating swig/Makefile
config.status: creating swig/nlopt.scm
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
[  2%] Performing build step for 'NLopt'
Making all in util
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[  2%] Performing install step for 'NLopt'
 /bin/mkdir -p '/home/f0z/libraries/shogun/third_party/libs/nlopt'
 /bin/bash ./libtool   --mode=install /usr/bin/install -c   libnlopt.la '/home/f0z/libraries/shogun/third_party/libs/nlopt'
libtool: install: /usr/bin/install -c .libs/libnlopt.lai /home/f0z/libraries/shogun/third_party/libs/nlopt/libnlopt.la
libtool: install: /usr/bin/install -c .libs/libnlopt.a /home/f0z/libraries/shogun/third_party/libs/nlopt/libnlopt.a
libtool: install: chmod 644 /home/f0z/libraries/shogun/third_party/libs/nlopt/libnlopt.a
libtool: install: ranlib /home/f0z/libraries/shogun/third_party/libs/nlopt/libnlopt.a
libtool: finish: PATH="/home/f0z/torch/install/bin:/home/f0z/torch/install/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/local/cuda/bin:/home/f0z/libraries/mosek/7/tools/platform/linux64x86/bin/:/sbin" ldconfig -n /home/f0z/libraries/shogun/third_party/libs/nlopt
----------------------------------------------------------------------
Libraries have been installed in:
   /home/f0z/libraries/shogun/third_party/libs/nlopt

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /bin/mkdir -p '/home/f0z/libraries/shogun/third_party/include/nlopt'
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[ 19%] Building CXX object src/shogun/CMakeFiles/libshogun.dir/structure/BeliefPropagation.cpp.o
In file included from /usr/include/c++/4.9/unordered_map:35:0,
                 from /home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.h:24,
                 from /home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:11:
/usr/include/c++/4.9/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options.
 #error This file requires compiler and library support for the \
  ^
In file included from /home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:11:0:
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.h:109:15: error: ‘unordered_map’ in namespace ‘std’ does not name a template type
  typedef std::unordered_map<uint32_t, uint32_t> msg_map_type;
               ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.h:110:15: error: ‘unordered_map’ in namespace ‘std’ does not name a template type
  typedef std::unordered_map<uint32_t, std::set<uint32_t> > msgset_map_type;
               ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.h:111:15: error: ‘unordered_multimap’ in namespace ‘std’ does not name a template type
  typedef std::unordered_multimap<int32_t, int32_t> var_factor_map_type;
               ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.h:144:2: error: ‘msg_map_type’ does not name a type
  msg_map_type m_msg_map_var;
  ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.h:145:2: error: ‘msg_map_type’ does not name a type
  msg_map_type m_msg_map_fac;
  ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.h:146:2: error: ‘msgset_map_type’ does not name a type
  msgset_map_type m_msgset_map_var;
  ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp: In constructor ‘shogun::CTreeMaxProduct::CTreeMaxProduct(shogun::CFactorGraph*)’:
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:76:4: error: ‘m_msg_map_var’ was not declared in this scope
    m_msg_map_var[m_msg_order[mi]->child] = mi;
    ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:81:4: error: ‘m_msg_map_fac’ was not declared in this scope
    m_msg_map_fac[m_msg_order[mi]->child] = mi;
    ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:83:4: error: ‘m_msgset_map_var’ was not declared in this scope
    m_msgset_map_var[m_msg_order[mi]->parent].insert(mi);
    ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp: In member function ‘void shogun::CTreeMaxProduct::init()’:
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:108:2: error: ‘m_msg_map_var’ was not declared in this scope
  m_msg_map_var = msg_map_type();
  ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:108:31: error: ‘msg_map_type’ was not declared in this scope
  m_msg_map_var = msg_map_type();
                               ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:109:2: error: ‘m_msg_map_fac’ was not declared in this scope
  m_msg_map_fac = msg_map_type();
  ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:110:2: error: ‘m_msgset_map_var’ was not declared in this scope
  m_msgset_map_var = msgset_map_type();
  ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:110:37: error: ‘msgset_map_type’ was not declared in this scope
  m_msgset_map_var = msgset_map_type();
                                     ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp: In member function ‘void shogun::CTreeMaxProduct::get_message_order(std::vector<shogun::MessageEdge*>&, std::vector<bool>&) const’:
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:140:2: error: ‘var_factor_map_type’ was not declared in this scope
  var_factor_map_type vf_map;
  ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:148:4: error: ‘vf_map’ was not declared in this scope
    vf_map.insert(var_factor_map_type::value_type(vars[vi], fi));
    ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:148:18: error: ‘var_factor_map_type’ is not a class or namespace
    vf_map.insert(var_factor_map_type::value_type(vars[vi], fi));
                  ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:176:12: error: ‘var_factor_map_type’ does not name a type
    typedef var_factor_map_type::const_iterator const_iter;
            ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:177:14: error: ‘const_iter’ was not declared in this scope
    std::pair<const_iter, const_iter> adj_factors = vf_map.equal_range(node->node_id);
              ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:177:36: error: template argument 1 is invalid
    std::pair<const_iter, const_iter> adj_factors = vf_map.equal_range(node->node_id);
                                    ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:177:36: error: type/value mismatch at argument 2 in template parameter list for ‘template<class _T1, class _T2> struct std::pair’
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:177:36: error:   expected a type, got ‘const_iter’
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:177:50: error: invalid type in declaration before ‘=’ token
    std::pair<const_iter, const_iter> adj_factors = vf_map.equal_range(node->node_id);
                                                  ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:177:52: error: ‘vf_map’ was not declared in this scope
    std::pair<const_iter, const_iter> adj_factors = vf_map.equal_range(node->node_id);
                                                    ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:178:20: error: expected ‘;’ before ‘mi’
    for (const_iter mi = adj_factors.first; mi != adj_factors.second; ++mi)
                    ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:178:44: error: ‘mi’ was not declared in this scope
    for (const_iter mi = adj_factors.first; mi != adj_factors.second; ++mi)
                                            ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:178:62: error: request for member ‘second’ in ‘adj_factors’, which is of non-class type ‘int’
    for (const_iter mi = adj_factors.first; mi != adj_factors.second; ++mi)
                                                              ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp: In member function ‘void shogun::CTreeMaxProduct::bottom_up_pass()’:
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:261:43: error: ‘m_msgset_map_var’ was not declared in this scope
    const std::set<uint32_t>& msgset_var = m_msgset_map_var[var_id];
                                           ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:304:25: error: ‘m_msg_map_var’ was not declared in this scope
      uint32_t adj_msg = m_msg_map_var[fvars[vi]];
                         ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:332:41: error: ‘m_msgset_map_var’ was not declared in this scope
   const std::set<uint32_t>& msgset_rt = m_msgset_map_var[ri];
                                         ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp: In member function ‘void shogun::CTreeMaxProduct::top_down_pass()’:
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:374:41: error: ‘m_msgset_map_var’ was not declared in this scope
   const std::set<uint32_t>& msgset_rt = m_msgset_map_var[ri];
                                         ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:426:27: error: ‘m_msg_map_var’ was not declared in this scope
     uint32_t parent_msg = m_msg_map_var[var_id];
                           ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:432:43: error: ‘m_msgset_map_var’ was not declared in this scope
    const std::set<uint32_t>& msgset_var = m_msgset_map_var[var_id];
                                           ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:464:26: error: ‘m_msg_map_var’ was not declared in this scope
       uint32_t adj_msg = m_msg_map_var[adj_id];
                          ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:506:26: error: ‘m_msg_map_fac’ was not declared in this scope
    uint32_t msg_parent = m_msg_map_fac[fac_id];
                          ^
/home/f0z/libraries/shogun/src/shogun/structure/BeliefPropagation.cpp:531:26: error: ‘m_msg_map_var’ was not declared in this scope
       uint32_t adj_msg = m_msg_map_var[adj_id];
                          ^
make[2]: *** [src/shogun/CMakeFiles/libshogun.dir/structure/BeliefPropagation.cpp.o] Error 1
make[1]: *** [src/shogun/CMakeFiles/libshogun.dir/all] Error 2
make: *** [all] Error 2