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Openmrs error 2

jerome24
Apr 27th, 2021
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  1. at java.lang.Thread.run(Thread.java:748)
  2.  
  3. Apr 27, 2021 6:16:32 PM org.apache.catalina.session.StandardManager stopInternal
  4. SEVERE: Exception unloading sessions to persistent storage
  5. java.io.FileNotFoundException: /var/lib/tomcat7/work/Catalina/localhost/openmrs/SESSIONS.ser (No such file or directory)
  6. at java.io.FileOutputStream.open0(Native Method)
  7. at java.io.FileOutputStream.open(FileOutputStream.java:270)
  8. at java.io.FileOutputStream.<init>(FileOutputStream.java:213)
  9. at java.io.FileOutputStream.<init>(FileOutputStream.java:101)
  10. at org.apache.catalina.session.StandardManager.doUnload(StandardManager.java:387)
  11. at org.apache.catalina.session.StandardManager.unload(StandardManager.java:354)
  12. at org.apache.catalina.session.StandardManager.stopInternal(StandardManager.java:519)
  13. at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:232)
  14. at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5701)
  15. at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:232)
  16. at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1575)
  17. at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1564)
  18. at java.util.concurrent.FutureTask.run(FutureTask.java:266)
  19. at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
  20. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
  21. at java.lang.Thread.run(Thread.java:748)
  22.  
  23. INFO - HibernateContextDAO.showUsageStatistics(414) |2021-04-27 18:16:33,068| QUERY: [CRITERIA] select this_.property as property1_43_0_, this_.property_value as property2_43_0_, this_.description as descript3_43_0_, this_.datatype as datatype4_43_0_, this_.datatype_config as datatype5_43_0_, this_.preferred_handler as preferre6_43_0_, this_.handler_config as handler_7_43_0_, this_.uuid as uuid8_43_0_, this_.changed_by as changed_9_43_0_, this_.date_changed as date_ch10_43_0_ from global_property this_ where lower(this_.property)=?
  24. INFO - HibernateContextDAO.showUsageStatistics(416) |2021-04-27 18:16:33,072| Cache Hit Count : 0
  25. INFO - HibernateContextDAO.showUsageStatistics(417) |2021-04-27 18:16:33,072| Cache Miss Count: 0
  26. INFO - HibernateContextDAO.showUsageStatistics(418) |2021-04-27 18:16:33,073| Cache Put Count : 0
  27. INFO - HibernateContextDAO.showUsageStatistics(419) |2021-04-27 18:16:33,075| Execution Count : 11
  28. INFO - HibernateContextDAO.showUsageStatistics(420) |2021-04-27 18:16:33,076| Average time : 3
  29. INFO - HibernateContextDAO.showUsageStatistics(421) |2021-04-27 18:16:33,076| Row Count : 11
  30. INFO - HibernateContextDAO.showUsageStatistics(414) |2021-04-27 18:16:33,077| QUERY: [CRITERIA] select this_.task_config_id as task_con1_89_0_, this_.uuid as uuid2_89_0_, this_.name as name3_89_0_, this_.description as descript4_89_0_, this_.schedulable_class as schedula5_89_0_, this_.repeat_interval as repeat_i6_89_0_, this_.start_time as start_ti7_89_0_, this_.start_time_pattern as start_ti8_89_0_, this_.last_execution_time as last_exe9_89_0_, this_.start_on_startup as start_o10_89_0_, this_.started as started11_89_0_, this_.created_by as created12_89_0_, this_.changed_by as changed13_89_0_, this_.date_created as date_cr14_89_0_, this_.date_changed as date_ch15_89_0_ from scheduler_task_config this_
  31. INFO - HibernateContextDAO.showUsageStatistics(416) |2021-04-27 18:16:33,079| Cache Hit Count : 0
  32. INFO - HibernateContextDAO.showUsageStatistics(417) |2021-04-27 18:16:33,080| Cache Miss Count: 0
  33. INFO - HibernateContextDAO.showUsageStatistics(418) |2021-04-27 18:16:33,080| Cache Put Count : 0
  34. INFO - HibernateContextDAO.showUsageStatistics(419) |2021-04-27 18:16:33,081| Execution Count : 1
  35. INFO - HibernateContextDAO.showUsageStatistics(420) |2021-04-27 18:16:33,084| Average time : 30
  36. INFO - HibernateContextDAO.showUsageStatistics(421) |2021-04-27 18:16:33,084| Row Count : 4
  37. INFO - HibernateContextDAO.showUsageStatistics(414) |2021-04-27 18:16:33,085| QUERY: from Role r order by r.role
  38. INFO - HibernateContextDAO.showUsageStatistics(416) |2021-04-27 18:16:33,085| Cache Hit Count : 0
  39. INFO - HibernateContextDAO.showUsageStatistics(417) |2021-04-27 18:16:33,085| Cache Miss Count: 0
  40. INFO - HibernateContextDAO.showUsageStatistics(418) |2021-04-27 18:16:33,091| Cache Put Count : 0
  41. INFO - HibernateContextDAO.showUsageStatistics(419) |2021-04-27 18:16:33,094| Execution Count : 1
  42. INFO - HibernateContextDAO.showUsageStatistics(420) |2021-04-27 18:16:33,095| Average time : 470
  43. INFO - HibernateContextDAO.showUsageStatistics(421) |2021-04-27 18:16:33,095| Row Count : 37
  44. INFO - HibernateContextDAO.showUsageStatistics(414) |2021-04-27 18:16:33,096| QUERY: [CRITERIA] select this_.property as property1_43_0_, this_.property_value as property2_43_0_, this_.description as descript3_43_0_, this_.datatype as datatype4_43_0_, this_.datatype_config as datatype5_43_0_, this_.preferred_handler as preferre6_43_0_, this_.handler_config as handler_7_43_0_, this_.uuid as uuid8_43_0_, this_.changed_by as changed_9_43_0_, this_.date_changed as date_ch10_43_0_ from global_property this_ order by this_.property asc
  45. INFO - HibernateContextDAO.showUsageStatistics(416) |2021-04-27 18:16:33,096| Cache Hit Count : 0
  46. INFO - HibernateContextDAO.showUsageStatistics(417) |2021-04-27 18:16:33,096| Cache Miss Count: 0
  47. INFO - HibernateContextDAO.showUsageStatistics(418) |2021-04-27 18:16:33,097| Cache Put Count : 0
  48. INFO - HibernateContextDAO.showUsageStatistics(419) |2021-04-27 18:16:33,097| Execution Count : 1
  49. INFO - HibernateContextDAO.showUsageStatistics(420) |2021-04-27 18:16:33,098| Average time : 129
  50. INFO - HibernateContextDAO.showUsageStatistics(421) |2021-04-27 18:16:33,098| Row Count : 557
  51. INFO - HibernateContextDAO.showUsageStatistics(414) |2021-04-27 18:16:33,098| QUERY: from Privilege p order by p.privilege
  52. INFO - HibernateContextDAO.showUsageStatistics(416) |2021-04-27 18:16:33,099| Cache Hit Count : 0
  53. INFO - HibernateContextDAO.showUsageStatistics(417) |2021-04-27 18:16:33,099| Cache Miss Count: 0
  54. INFO - HibernateContextDAO.showUsageStatistics(418) |2021-04-27 18:16:33,100| Cache Put Count : 0
  55. INFO - HibernateContextDAO.showUsageStatistics(419) |2021-04-27 18:16:33,100| Execution Count : 1
  56. INFO - HibernateContextDAO.showUsageStatistics(420) |2021-04-27 18:16:33,100| Average time : 17
  57. INFO - HibernateContextDAO.showUsageStatistics(421) |2021-04-27 18:16:33,101| Row Count : 331
  58. INFO - HibernateContextDAO.showUsageStatistics(414) |2021-04-27 18:16:33,101| QUERY: from User u where u.uuid = :uuid
  59. INFO - HibernateContextDAO.showUsageStatistics(416) |2021-04-27 18:16:33,101| Cache Hit Count : 0
  60. INFO - HibernateContextDAO.showUsageStatistics(417) |2021-04-27 18:16:33,102| Cache Miss Count: 0
  61. INFO - HibernateContextDAO.showUsageStatistics(418) |2021-04-27 18:16:33,105| Cache Put Count : 0
  62. INFO - HibernateContextDAO.showUsageStatistics(419) |2021-04-27 18:16:33,108| Execution Count : 354
  63. INFO - HibernateContextDAO.showUsageStatistics(420) |2021-04-27 18:16:33,108| Average time : 3
  64. INFO - HibernateContextDAO.showUsageStatistics(421) |2021-04-27 18:16:33,109| Row Count : 354
  65. INFO - HibernateContextDAO.showUsageStatistics(414) |2021-04-27 18:16:33,109| QUERY: from HL7InQueue as hiq where hiq.messageState = ? order by HL7InQueueId
  66. INFO - HibernateContextDAO.showUsageStatistics(416) |2021-04-27 18:16:33,110| Cache Hit Count : 0
  67. INFO - HibernateContextDAO.showUsageStatistics(417) |2021-04-27 18:16:33,110| Cache Miss Count: 0
  68. INFO - HibernateContextDAO.showUsageStatistics(418) |2021-04-27 18:16:33,110| Cache Put Count : 0
  69. INFO - HibernateContextDAO.showUsageStatistics(419) |2021-04-27 18:16:33,112| Execution Count : 353
  70. INFO - HibernateContextDAO.showUsageStatistics(420) |2021-04-27 18:16:33,113| Average time : 0
  71. INFO - HibernateContextDAO.showUsageStatistics(421) |2021-04-27 18:16:33,114| Row Count : 0
  72. INFO - HibernateContextDAO.showUsageStatistics(414) |2021-04-27 18:16:33,114| QUERY: [CRITERIA] select this_.property as property1_43_0_, this_.property_value as property2_43_0_, this_.description as descript3_43_0_, this_.datatype as datatype4_43_0_, this_.datatype_config as datatype5_43_0_, this_.preferred_handler as preferre6_43_0_, this_.handler_config as handler_7_43_0_, this_.uuid as uuid8_43_0_, this_.changed_by as changed_9_43_0_, this_.date_changed as date_ch10_43_0_ from global_property this_ where lower(this_.property) like ?
  73. INFO - HibernateContextDAO.showUsageStatistics(416) |2021-04-27 18:16:33,115| Cache Hit Count : 0
  74. INFO - HibernateContextDAO.showUsageStatistics(417) |2021-04-27 18:16:33,115| Cache Miss Count: 0
  75. INFO - HibernateContextDAO.showUsageStatistics(418) |2021-04-27 18:16:33,115| Cache Put Count : 0
  76. INFO - HibernateContextDAO.showUsageStatistics(419) |2021-04-27 18:16:33,116| Execution Count : 1
  77. INFO - HibernateContextDAO.showUsageStatistics(420) |2021-04-27 18:16:33,116| Average time : 2
  78. INFO - HibernateContextDAO.showUsageStatistics(421) |2021-04-27 18:16:33,116| Row Count : 51
  79. Apr 27, 2021 6:16:33 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
  80. SEVERE: The web application [/openmrs] appears to have started a thread named [FileWatchdog] but has failed to stop it. This is very likely to create a memory leak.
  81. Apr 27, 2021 6:16:33 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
  82. SEVERE: The web application [/openmrs] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak.
  83. Apr 27, 2021 6:16:33 PM org.apache.catalina.loader.WebappClassLoader checkThreadLocalMapForLeaks
  84. SEVERE: The web application [/openmrs] created a ThreadLocal with key of type [org.springframework.core.NamedThreadLocal] (value [Transactional resources]) and a value of type [java.util.HashMap] (value [{org.hibernate.internal.SessionFactoryImpl@19f67f09=org.springframework.orm.hibernate4.SessionHolder@399f931a}]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
  85. Apr 27, 2021 6:16:33 PM org.apache.coyote.AbstractProtocol stop
  86. INFO: Stopping ProtocolHandler ["http-bio-8080"]
  87. Apr 27, 2021 6:16:33 PM org.apache.coyote.AbstractProtocol destroy
  88. INFO: Destroying ProtocolHandler ["http-bio-8080"]
  89. OpenJDK 64-Bit Server VM warning: ignoring option PermSize=256m; support was removed in 8.0
  90. OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1024m; support was removed in 8.0
  91. Apr 27, 2021 6:16:34 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  92. WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false]
  93. Apr 27, 2021 6:16:34 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  94. WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false]
  95. Apr 27, 2021 6:16:35 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  96. WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false]
  97. Apr 27, 2021 6:16:35 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  98. WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false]
  99. Apr 27, 2021 6:16:35 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  100. WARNING: Problem with directory [/usr/share/tomcat7/shared/classes], exists: [false], isDirectory: [false], canRead: [false]
  101. Apr 27, 2021 6:16:35 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  102. WARNING: Problem with directory [/usr/share/tomcat7/shared], exists: [false], isDirectory: [false], canRead: [false]
  103. Apr 27, 2021 6:16:36 PM org.apache.coyote.AbstractProtocol init
  104. INFO: Initializing ProtocolHandler ["http-bio-8080"]
  105. Apr 27, 2021 6:16:36 PM org.apache.catalina.startup.Catalina load
  106. INFO: Initialization processed in 1010 ms
  107. Apr 27, 2021 6:16:36 PM org.apache.catalina.core.StandardService startInternal
  108. INFO: Starting service Catalina
  109. Apr 27, 2021 6:16:36 PM org.apache.catalina.core.StandardEngine startInternal
  110. INFO: Starting Servlet Engine: Apache Tomcat/7.0.52 (Ubuntu)
  111. Apr 27, 2021 6:16:36 PM org.apache.catalina.startup.HostConfig deployDescriptor
  112. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml
  113. Apr 27, 2021 6:16:36 PM org.apache.catalina.core.StandardContext postWorkDirectory
  114. WARNING: Failed to create work directory [/var/lib/tomcat7/work/Catalina/localhost/manager] for context [/manager]
  115. Apr 27, 2021 6:16:36 PM org.apache.jasper.EmbeddedServletOptions <init>
  116. SEVERE: The scratchDir you specified: /var/lib/tomcat7/work/Catalina/localhost/manager is unusable.
  117. Apr 27, 2021 6:16:36 PM org.apache.catalina.startup.HostConfig deployDescriptor
  118. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml
  119. Apr 27, 2021 6:16:36 PM org.apache.catalina.core.StandardContext postWorkDirectory
  120. WARNING: Failed to create work directory [/var/lib/tomcat7/work/Catalina/localhost/host-manager] for context [/host-manager]
  121. Apr 27, 2021 6:16:36 PM org.apache.jasper.EmbeddedServletOptions <init>
  122. SEVERE: The scratchDir you specified: /var/lib/tomcat7/work/Catalina/localhost/host-manager is unusable.
  123. Apr 27, 2021 6:16:36 PM org.apache.catalina.startup.HostConfig deployWAR
  124. INFO: Deploying web application archive /var/lib/tomcat7/webapps/openmrs.war
  125. Apr 27, 2021 6:16:36 PM org.apache.catalina.core.StandardContext postWorkDirectory
  126. WARNING: Failed to create work directory [/var/lib/tomcat7/work/Catalina/localhost/openmrs] for context [/openmrs]
  127. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2021-04-27 18:16:44,215| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  128. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2021-04-27 18:16:44,238| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  129. INFO - Listener.contextInitialized(173) |2021-04-27 18:16:44,238| Using runtime properties file: /usr/share/tomcat7/.OpenMRS/openmrs-runtime.properties
  130. ERROR - MarkerIgnoringBase.error(159) |2021-04-27 18:16:45,548| Failed to obtain JDBC connection
  131. java.lang.RuntimeException: Error occurred while trying to get the updates needed for the database. liquibase-update-to-latest.xml does not exist
  132. at org.openmrs.util.DatabaseUpdater.getUnrunDatabaseChanges(DatabaseUpdater.java:630)
  133. at org.openmrs.util.DatabaseUpdater.getUnrunDatabaseChanges(DatabaseUpdater.java:587)
  134. at org.openmrs.util.DatabaseUpdater.updatesRequired(DatabaseUpdater.java:252)
  135. at org.openmrs.web.Listener.setupNeeded(Listener.java:217)
  136. at org.openmrs.web.Listener.contextInitialized(Listener.java:179)
  137. at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5019)
  138. at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5513)
  139. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  140. at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
  141. at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
  142. at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:632)
  143. at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1073)
  144. at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1857)
  145. at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
  146. at java.util.concurrent.FutureTask.run(FutureTask.java:266)
  147. at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
  148. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
  149. at java.lang.Thread.run(Thread.java:748)
  150. Caused by: liquibase.exception.ChangeLogParseException: liquibase-update-to-latest.xml does not exist
  151. at liquibase.parser.core.xml.XMLChangeLogSAXParser.parse(XMLChangeLogSAXParser.java:93)
  152. at liquibase.Liquibase.listUnrunChangeSets(Liquibase.java:623)
  153. at org.openmrs.util.DatabaseUpdater.getUnrunDatabaseChanges(DatabaseUpdater.java:617)
  154. ... 17 more
  155. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2021-04-27 18:16:46,029| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  156. Apr 27, 2021 6:16:46 PM org.apache.jasper.EmbeddedServletOptions <init>
  157. SEVERE: The scratchDir you specified: /var/lib/tomcat7/work/Catalina/localhost/openmrs is unusable.
  158. Apr 27, 2021 6:16:46 PM org.apache.catalina.startup.HostConfig deployDirectory
  159. INFO: Deploying web application directory /var/lib/tomcat7/webapps/ROOT
  160. Apr 27, 2021 6:16:46 PM org.apache.catalina.core.StandardContext postWorkDirectory
  161. WARNING: Failed to create work directory [/var/lib/tomcat7/work/Catalina/localhost/_] for context []
  162. Apr 27, 2021 6:16:46 PM org.apache.jasper.EmbeddedServletOptions <init>
  163. SEVERE: The scratchDir you specified: /var/lib/tomcat7/work/Catalina/localhost/_ is unusable.
  164. Apr 27, 2021 6:16:46 PM org.apache.coyote.AbstractProtocol start
  165. INFO: Starting ProtocolHandler ["http-bio-8080"]
  166. Apr 27, 2021 6:16:46 PM org.apache.catalina.startup.Catalina start
  167. INFO: Server startup in 10469 ms
  168. Apr 27, 2021 6:41:21 PM org.apache.coyote.AbstractProtocol pause
  169. INFO: Pausing ProtocolHandler ["http-bio-8080"]
  170. Apr 27, 2021 6:41:21 PM org.apache.catalina.core.StandardService stopInternal
  171. INFO: Stopping service Catalina
  172. ERROR - Context.getServiceContext(273) |2021-04-27 18:41:21,666| serviceContext is null. Creating new ServiceContext()
  173. WARN - LocaleUtility.getDefaultLocale(73) |2021-04-27 18:41:21,763| Unable to get locale global property value. Service not found: interface org.openmrs.api.AdministrationService
  174. Listener.contextDestroyed: Error while shutting down openmrs:
  175. ERROR - Listener.contextDestroyed(548) |2021-04-27 18:41:21,764| Listener.contextDestroyed: Error while shutting down openmrs:
  176. org.openmrs.api.APIException
  177. at org.openmrs.api.context.Context.getContextDAO(Context.java:167)
  178. at org.openmrs.api.context.Context.openSession(Context.java:772)
  179. at org.openmrs.web.Listener.contextDestroyed(Listener.java:536)
  180. at org.apache.catalina.core.StandardContext.listenerStop(StandardContext.java:5060)
  181. at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5705)
  182. at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:232)
  183. at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1575)
  184. at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1564)
  185. at java.util.concurrent.FutureTask.run(FutureTask.java:266)
  186. at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
  187. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
  188. at java.lang.Thread.run(Thread.java:748)
  189. Apr 27, 2021 6:41:21 PM org.apache.catalina.loader.WebappClassLoader clearReferencesJdbc
  190. SEVERE: The web application [/openmrs] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
  191. Apr 27, 2021 6:41:21 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
  192. SEVERE: The web application [/openmrs] appears to have started a thread named [FileWatchdog] but has failed to stop it. This is very likely to create a memory leak.
  193. Apr 27, 2021 6:41:21 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
  194. SEVERE: The web application [/openmrs] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak.
  195. Apr 27, 2021 6:41:21 PM org.apache.coyote.AbstractProtocol stop
  196. INFO: Stopping ProtocolHandler ["http-bio-8080"]
  197. Apr 27, 2021 6:41:21 PM org.apache.coyote.AbstractProtocol destroy
  198. INFO: Destroying ProtocolHandler ["http-bio-8080"]
  199. OpenJDK 64-Bit Server VM warning: ignoring option PermSize=256m; support was removed in 8.0
  200. OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1024m; support was removed in 8.0
  201. Apr 27, 2021 6:41:23 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  202. WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false]
  203. Apr 27, 2021 6:41:23 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  204. WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false]
  205. Apr 27, 2021 6:41:23 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  206. WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false]
  207. Apr 27, 2021 6:41:23 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  208. WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false]
  209. Apr 27, 2021 6:41:23 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  210. WARNING: Problem with directory [/usr/share/tomcat7/shared/classes], exists: [false], isDirectory: [false], canRead: [false]
  211. Apr 27, 2021 6:41:23 PM org.apache.catalina.startup.ClassLoaderFactory validateFile
  212. WARNING: Problem with directory [/usr/share/tomcat7/shared], exists: [false], isDirectory: [false], canRead: [false]
  213. Apr 27, 2021 6:41:24 PM org.apache.coyote.AbstractProtocol init
  214. INFO: Initializing ProtocolHandler ["http-bio-8080"]
  215. Apr 27, 2021 6:41:24 PM org.apache.catalina.startup.Catalina load
  216. INFO: Initialization processed in 1055 ms
  217. Apr 27, 2021 6:41:24 PM org.apache.catalina.core.StandardService startInternal
  218. INFO: Starting service Catalina
  219. Apr 27, 2021 6:41:24 PM org.apache.catalina.core.StandardEngine startInternal
  220. INFO: Starting Servlet Engine: Apache Tomcat/7.0.52 (Ubuntu)
  221. Apr 27, 2021 6:41:24 PM org.apache.catalina.startup.HostConfig deployDescriptor
  222. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml
  223. Apr 27, 2021 6:41:24 PM org.apache.catalina.core.StandardContext postWorkDirectory
  224. WARNING: Failed to create work directory [/var/lib/tomcat7/work/Catalina/localhost/manager] for context [/manager]
  225. Apr 27, 2021 6:41:25 PM org.apache.jasper.EmbeddedServletOptions <init>
  226. SEVERE: The scratchDir you specified: /var/lib/tomcat7/work/Catalina/localhost/manager is unusable.
  227. Apr 27, 2021 6:41:25 PM org.apache.catalina.startup.HostConfig deployDescriptor
  228. INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml
  229. Apr 27, 2021 6:41:25 PM org.apache.catalina.core.StandardContext postWorkDirectory
  230. WARNING: Failed to create work directory [/var/lib/tomcat7/work/Catalina/localhost/host-manager] for context [/host-manager]
  231. Apr 27, 2021 6:41:25 PM org.apache.jasper.EmbeddedServletOptions <init>
  232. SEVERE: The scratchDir you specified: /var/lib/tomcat7/work/Catalina/localhost/host-manager is unusable.
  233. Apr 27, 2021 6:41:25 PM org.apache.catalina.startup.HostConfig deployWAR
  234. INFO: Deploying web application archive /var/lib/tomcat7/webapps/openmrs.war
  235. Apr 27, 2021 6:41:25 PM org.apache.catalina.core.StandardContext postWorkDirectory
  236. WARNING: Failed to create work directory [/var/lib/tomcat7/work/Catalina/localhost/openmrs] for context [/openmrs]
  237. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2021-04-27 18:41:34,808| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  238. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2021-04-27 18:41:34,832| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  239. INFO - Listener.contextInitialized(173) |2021-04-27 18:41:34,833| Using runtime properties file: /usr/share/tomcat7/.OpenMRS/openmrs-runtime.properties
  240. ERROR - MarkerIgnoringBase.error(159) |2021-04-27 18:41:36,471| Failed to obtain JDBC connection
  241. java.lang.RuntimeException: Error occurred while trying to get the updates needed for the database. liquibase-update-to-latest.xml does not exist
  242. at org.openmrs.util.DatabaseUpdater.getUnrunDatabaseChanges(DatabaseUpdater.java:630)
  243. at org.openmrs.util.DatabaseUpdater.getUnrunDatabaseChanges(DatabaseUpdater.java:587)
  244. at org.openmrs.util.DatabaseUpdater.updatesRequired(DatabaseUpdater.java:252)
  245. at org.openmrs.web.Listener.setupNeeded(Listener.java:217)
  246. at org.openmrs.web.Listener.contextInitialized(Listener.java:179)
  247. at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5019)
  248. at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5513)
  249. at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
  250. at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
  251. at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
  252. at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:632)
  253. at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1073)
  254. at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1857)
  255. at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
  256. at java.util.concurrent.FutureTask.run(FutureTask.java:266)
  257. at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
  258. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
  259. at java.lang.Thread.run(Thread.java:748)
  260. Caused by: liquibase.exception.ChangeLogParseException: liquibase-update-to-latest.xml does not exist
  261. at liquibase.parser.core.xml.XMLChangeLogSAXParser.parse(XMLChangeLogSAXParser.java:93)
  262. at liquibase.Liquibase.listUnrunChangeSets(Liquibase.java:623)
  263. at org.openmrs.util.DatabaseUpdater.getUnrunDatabaseChanges(DatabaseUpdater.java:617)
  264. ... 17 more
  265. WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2078) |2021-04-27 18:41:36,851| Unable to find a runtime properties file at /var/lib/tomcat7/openmrs-runtime.properties
  266. Apr 27, 2021 6:41:36 PM org.apache.jasper.EmbeddedServletOptions <init>
  267. SEVERE: The scratchDir you specified: /var/lib/tomcat7/work/Catalina/localhost/openmrs is unusable.
  268. Apr 27, 2021 6:41:36 PM org.apache.catalina.startup.HostConfig deployDirectory
  269. INFO: Deploying web application directory /var/lib/tomcat7/webapps/ROOT
  270. Apr 27, 2021 6:41:36 PM org.apache.catalina.core.StandardContext postWorkDirectory
  271. WARNING: Failed to create work directory [/var/lib/tomcat7/work/Catalina/localhost/_] for context []
  272. Apr 27, 2021 6:41:37 PM org.apache.jasper.EmbeddedServletOptions <init>
  273. SEVERE: The scratchDir you specified: /var/lib/tomcat7/work/Catalina/localhost/_ is unusable.
  274. Apr 27, 2021 6:41:37 PM org.apache.coyote.AbstractProtocol start
  275. INFO: Starting ProtocolHandler ["http-bio-8080"]
  276. Apr 27, 2021 6:41:37 PM org.apache.catalina.startup.Catalina start
  277. INFO: Server startup in 12639 ms
  278.  
  279.  
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