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misnomer001

steppe_en ehg+chg+gac fail

misnomer001
Aug 2nd, 2022 (edited)
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: NO
  9. oldallsnps: NO
  10. S1: newpush
  11. S1X: newpush
  12. indivname: newpush.ind
  13. snpname: newpush.snp
  14. genotypename: newpush.geno
  15. ## qpAdm version: 1520
  16. seed: 1194824696
  17. inbreed set NO
  18. inbreed set NO
  19. tmp: /tmp/fsx.15420
  20.  
  21. left pops:
  22. Russia_Steppe_Eneolithic
  23. EHG
  24. CHG
  25. Poland_Globular_Amphora
  26.  
  27. right pops:
  28. Mbuti.DG
  29. Serbia_IronGates_Mesolithic
  30. Iran_GanjDareh_N
  31. Sunghir
  32. China_YR_MN
  33. Turkey_N
  34. Russia_Yana_UP.SG
  35. Russia_Shamanka_Eneolithic.SG
  36. ONG.SG
  37. WSHG
  38. Tarim_EMBA1
  39.  
  40. codimension 1
  41. f4info:
  42. f4rank: 2 dof: 8 chisq: 97.304 tail: 1.51678508e-17 dofdiff: 10 chisqdiff: -97.304 taildiff: 1
  43. B:
  44. scale 1.000 1.000
  45. Serbia_IronGates_Mesolithic 0.711 2.114
  46. Iran_GanjDareh_N -0.154 -1.084
  47. Sunghir 0.293 0.573
  48. China_YR_MN 0.444 -0.041
  49. Turkey_N -0.636 1.893
  50. Russia_Yana_UP.SG 0.521 0.296
  51. Russia_Shamanka_Eneolithic.SG 0.629 -0.185
  52. ONG.SG 0.288 -0.059
  53. WSHG 1.951 -0.022
  54. Tarim_EMBA1 2.055 -0.561
  55. A:
  56. scale 76.762 154.962
  57. EHG 1.108 0.768
  58. CHG -0.987 -0.620
  59. Poland_Globular_Amphora -0.892 1.423
  60.  
  61.  
  62. full rank
  63. f4info:
  64. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 8 chisqdiff: 97.304 taildiff: 1.51678508e-17
  65. B:
  66. scale 72.972 64.280 62.220
  67. Serbia_IronGates_Mesolithic 1.510 -1.214 0.676
  68. Iran_GanjDareh_N -0.810 0.082 -0.657
  69. Sunghir 0.587 -0.404 0.134
  70. China_YR_MN 0.402 -0.434 -0.368
  71. Turkey_N -0.170 -0.237 1.427
  72. Russia_Yana_UP.SG 0.727 -0.496 -0.177
  73. Russia_Shamanka_Eneolithic.SG 0.617 -0.488 -0.539
  74. ONG.SG 0.250 -0.294 -0.285
  75. WSHG 1.768 -1.923 -1.584
  76. Tarim_EMBA1 1.559 -1.961 -2.002
  77. A:
  78. scale 1.732 1.732 1.732
  79. EHG 1.732 0.000 0.000
  80. CHG 0.000 1.732 0.000
  81. Poland_Globular_Amphora 0.000 0.000 1.732
  82.  
  83.  
  84. best coefficients: 0.472 0.545 -0.017
  85. totmean: 0.472 0.545 -0.017
  86. boot mean: 0.472 0.545 -0.017
  87. std. errors: 0.015 0.022 0.020
  88.  
  89. error covariance (* 1,000,000)
  90. 217 -146 -71
  91. -146 465 -318
  92. -71 -318 390
  93.  
  94.  
  95. summ: Russia_Steppe_Eneolithic 3 0.000000 0.472 0.545 -0.017 217 -146 -71 465 -318 ...
  96. 390
  97.  
  98. fixed pat wt dof chisq tail prob
  99. 000 0 8 97.304 1.51679e-17 0.472 0.545 -0.017 infeasible
  100. 001 1 9 98.846 2.69306e-17 0.468 0.532 0.000
  101. 010 1 9 817.682 0 0.688 0.000 0.312
  102. 100 1 9 840.459 0 0.000 1.159 -0.159 infeasible
  103. 011 2 10 1212.183 0 1.000 0.000 0.000
  104. 101 2 10 866.944 0 0.000 1.000 0.000
  105. 110 2 10 2227.792 0 0.000 0.000 1.000
  106. best pat: 000 1.51679e-17 - -
  107. best pat: 001 2.69306e-17 chi(nested): 1.542 p-value for nested model: 0.214349
  108. best pat: 101 8.26435e-180 chi(nested): 768.098 p-value for nested model: 4.66507e-169
  109.  
  110. coeffs: 0.472 0.545 -0.017
  111.  
  112. ## dscore:: f_4(Base, Fit, Rbase, right2)
  113. ## genstat:: f_4(Base, Fit, right1, right2)
  114.  
  115. details: EHG Serbia_IronGates_Mesolithic 0.020692 20.046319
  116. details: CHG Serbia_IronGates_Mesolithic -0.018880 -15.504317
  117. details: Poland_Globular_Amphora Serbia_IronGates_Mesolithic 0.010862 9.206630
  118. dscore: Serbia_IronGates_Mesolithic f4: -0.000711 Z: -0.770162
  119.  
  120. details: EHG Iran_GanjDareh_N -0.011101 -10.566848
  121. details: CHG Iran_GanjDareh_N 0.001272 1.071506
  122. details: Poland_Globular_Amphora Iran_GanjDareh_N -0.010560 -9.777175
  123. dscore: Iran_GanjDareh_N f4: -0.004366 Z: -4.701630
  124.  
  125. details: EHG Sunghir 0.008049 7.388456
  126. details: CHG Sunghir -0.006290 -5.125963
  127. details: Poland_Globular_Amphora Sunghir 0.002156 1.845666
  128. dscore: Sunghir f4: 0.000333 Z: 0.347225
  129.  
  130. details: EHG China_YR_MN 0.005506 4.961230
  131. details: CHG China_YR_MN -0.006753 -5.119486
  132. details: Poland_Globular_Amphora China_YR_MN -0.005917 -4.845971
  133. dscore: China_YR_MN f4: -0.000982 Z: -0.970237
  134.  
  135. details: EHG Turkey_N -0.002323 -2.583475
  136. details: CHG Turkey_N -0.003689 -3.486465
  137. details: Poland_Globular_Amphora Turkey_N 0.022942 22.551881
  138. dscore: Turkey_N f4: -0.003497 Z: -4.367172
  139.  
  140. details: EHG Russia_Yana_UP.SG 0.009957 8.537893
  141. details: CHG Russia_Yana_UP.SG -0.007721 -5.916924
  142. details: Poland_Globular_Amphora Russia_Yana_UP.SG -0.002844 -2.256685
  143. dscore: Russia_Yana_UP.SG f4: 0.000539 Z: 0.533656
  144.  
  145. details: EHG Russia_Shamanka_Eneolithic.SG 0.008452 8.564327
  146. details: CHG Russia_Shamanka_Eneolithic.SG -0.007597 -6.476571
  147. details: Poland_Globular_Amphora Russia_Shamanka_Eneolithic.SG -0.008657 -7.851331
  148. dscore: Russia_Shamanka_Eneolithic.SG f4: -0.000005 Z: -0.006074
  149.  
  150. details: EHG ONG.SG 0.003419 3.101485
  151. details: CHG ONG.SG -0.004575 -3.752231
  152. details: Poland_Globular_Amphora ONG.SG -0.004586 -3.946081
  153. dscore: ONG.SG f4: -0.000802 Z: -0.851103
  154.  
  155. details: EHG WSHG 0.024232 17.916932
  156. details: CHG WSHG -0.029914 -20.743790
  157. details: Poland_Globular_Amphora WSHG -0.025462 -17.317364
  158. dscore: WSHG f4: -0.004437 Z: -3.824415
  159.  
  160. details: EHG Tarim_EMBA1 0.021369 15.198696
  161. details: CHG Tarim_EMBA1 -0.030500 -20.205893
  162. details: Poland_Globular_Amphora Tarim_EMBA1 -0.032175 -23.407607
  163. dscore: Tarim_EMBA1 f4: -0.005993 Z: -4.967579
  164.  
  165. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -0.770
  166. gendstat: Mbuti.DG Iran_GanjDareh_N -4.702
  167. gendstat: Mbuti.DG Sunghir 0.347
  168. gendstat: Mbuti.DG China_YR_MN -0.970
  169. gendstat: Mbuti.DG Turkey_N -4.367
  170. gendstat: Mbuti.DG Russia_Yana_UP.SG 0.534
  171. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG -0.006
  172. gendstat: Mbuti.DG ONG.SG -0.851
  173. gendstat: Mbuti.DG WSHG -3.824
  174. gendstat: Mbuti.DG Tarim_EMBA1 -4.968
  175. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N -3.596
  176. gendstat: Serbia_IronGates_Mesolithic Sunghir 1.174
  177. gendstat: Serbia_IronGates_Mesolithic China_YR_MN -0.267
  178. gendstat: Serbia_IronGates_Mesolithic Turkey_N -3.938
  179. gendstat: Serbia_IronGates_Mesolithic Russia_Yana_UP.SG 1.289
  180. gendstat: Serbia_IronGates_Mesolithic Russia_Shamanka_Eneolithic.SG 0.786
  181. gendstat: Serbia_IronGates_Mesolithic ONG.SG -0.093
  182. gendstat: Serbia_IronGates_Mesolithic WSHG -3.432
  183. gendstat: Serbia_IronGates_Mesolithic Tarim_EMBA1 -4.694
  184. gendstat: Iran_GanjDareh_N Sunghir 4.754
  185. gendstat: Iran_GanjDareh_N China_YR_MN 3.411
  186. gendstat: Iran_GanjDareh_N Turkey_N 1.108
  187. gendstat: Iran_GanjDareh_N Russia_Yana_UP.SG 4.572
  188. gendstat: Iran_GanjDareh_N Russia_Shamanka_Eneolithic.SG 4.998
  189. gendstat: Iran_GanjDareh_N ONG.SG 3.665
  190. gendstat: Iran_GanjDareh_N WSHG -0.060
  191. gendstat: Iran_GanjDareh_N Tarim_EMBA1 -1.406
  192. gendstat: Sunghir China_YR_MN -1.269
  193. gendstat: Sunghir Turkey_N -4.592
  194. gendstat: Sunghir Russia_Yana_UP.SG 0.208
  195. gendstat: Sunghir Russia_Shamanka_Eneolithic.SG -0.365
  196. gendstat: Sunghir ONG.SG -1.137
  197. gendstat: Sunghir WSHG -4.239
  198. gendstat: Sunghir Tarim_EMBA1 -5.706
  199. gendstat: China_YR_MN Turkey_N -2.658
  200. gendstat: China_YR_MN Russia_Yana_UP.SG 1.475
  201. gendstat: China_YR_MN Russia_Shamanka_Eneolithic.SG 1.529
  202. gendstat: China_YR_MN ONG.SG 0.201
  203. gendstat: China_YR_MN WSHG -3.027
  204. gendstat: China_YR_MN Tarim_EMBA1 -4.500
  205. gendstat: Turkey_N Russia_Yana_UP.SG 4.295
  206. gendstat: Turkey_N Russia_Shamanka_Eneolithic.SG 4.273
  207. gendstat: Turkey_N ONG.SG 3.087
  208. gendstat: Turkey_N WSHG -0.844
  209. gendstat: Turkey_N Tarim_EMBA1 -2.207
  210. gendstat: Russia_Yana_UP.SG Russia_Shamanka_Eneolithic.SG -0.598
  211. gendstat: Russia_Yana_UP.SG ONG.SG -1.284
  212. gendstat: Russia_Yana_UP.SG WSHG -4.388
  213. gendstat: Russia_Yana_UP.SG Tarim_EMBA1 -5.832
  214. gendstat: Russia_Shamanka_Eneolithic.SG ONG.SG -0.957
  215. gendstat: Russia_Shamanka_Eneolithic.SG WSHG -4.238
  216. gendstat: Russia_Shamanka_Eneolithic.SG Tarim_EMBA1 -5.856
  217. gendstat: ONG.SG WSHG -3.050
  218. gendstat: ONG.SG Tarim_EMBA1 -4.448
  219. gendstat: WSHG Tarim_EMBA1 -1.644
  220.  
  221. removing /tmp/fsx.15420
  222. ##end of qpAdm: 6.900 seconds cpu 0.430 Mbytes in use
  223.  
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