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misnomer001

yamnaya wshg fail

misnomer001
Feb 7th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1825516553
  4. read 1073741824 bytes
  5. read 1324255962 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Russia_Yamnaya_Samara
  11. EEHG
  12. Georgia_Kotias.SG
  13. Ukraine_Globular_Amphora
  14. WSHG
  15.  
  16. right pops:
  17. Russia_MA1_HG
  18. Italy_Villabruna
  19. Russia_Kostenki14
  20. Luxembourg_Loschbour
  21. Anatolia_N
  22. Czech_Vestonice16
  23. Morocco_Iberomaurusian
  24. Russia_Shamanka_EN.SG
  25. Georgia_Satsurblia.SG
  26. Ganj_Dareh_N
  27. Onge.DG
  28. SE_Iberia_MLN
  29. PPN
  30.  
  31. 0 Russia_Yamnaya_Samara 8
  32. 1 EEHG 5
  33. 2 Georgia_Kotias.SG 1
  34. 3 Ukraine_Globular_Amphora 3
  35. 4 WSHG 3
  36. 5 Russia_MA1_HG 1
  37. 6 Italy_Villabruna 1
  38. 7 Russia_Kostenki14 1
  39. 8 Luxembourg_Loschbour 1
  40. 9 Anatolia_N 23
  41. 10 Czech_Vestonice16 1
  42. 11 Morocco_Iberomaurusian 6
  43. 12 Russia_Shamanka_EN.SG 10
  44. 13 Georgia_Satsurblia.SG 1
  45. 14 Ganj_Dareh_N 8
  46. 15 Onge.DG 2
  47. 16 SE_Iberia_MLN 14
  48. 17 PPN 8
  49. jackknife block size: 0.050
  50. snps: 1150468 indivs: 97
  51. number of blocks for block jackknife: 713
  52. ## ncols: 1150468
  53. coverage: Russia_Yamnaya_Samara 1092113
  54. coverage: EEHG 1052093
  55. coverage: Georgia_Kotias.SG 1149097
  56. coverage: Ukraine_Globular_Amphora 1036892
  57. coverage: WSHG 858019
  58. coverage: Russia_MA1_HG 805960
  59. coverage: Italy_Villabruna 883779
  60. coverage: Russia_Kostenki14 1068326
  61. coverage: Luxembourg_Loschbour 460892
  62. coverage: Anatolia_N 1136560
  63. coverage: Czech_Vestonice16 732091
  64. coverage: Morocco_Iberomaurusian 1101342
  65. coverage: Russia_Shamanka_EN.SG 1149998
  66. coverage: Georgia_Satsurblia.SG 801311
  67. coverage: Ganj_Dareh_N 1057358
  68. coverage: Onge.DG 1120748
  69. coverage: SE_Iberia_MLN 985553
  70. coverage: PPN 835499
  71. dof (jackknife): 614.764
  72. numsnps used: 1150468
  73. codimension 1
  74. f4info:
  75. f4rank: 3 dof: 9 chisq: 48.559 tail: 2.00741005e-07 dofdiff: 11 chisqdiff: -48.559 taildiff: 1
  76. B:
  77. scale 1.000 1.000 1.000
  78. Italy_Villabruna 0.926 1.560 0.748
  79. Russia_Kostenki14 0.824 0.286 0.122
  80. Luxembourg_Loschbour 0.508 0.864 0.547
  81. Anatolia_N 1.473 0.664 -1.168
  82. Czech_Vestonice16 0.742 0.570 0.184
  83. Morocco_Iberomaurusian 1.099 0.097 -0.631
  84. Russia_Shamanka_EN.SG 0.501 -0.475 -0.764
  85. Georgia_Satsurblia.SG 0.993 -2.169 2.533
  86. Ganj_Dareh_N 1.041 -1.334 0.914
  87. Onge.DG 0.748 -0.451 -0.142
  88. SE_Iberia_MLN 1.341 0.869 -0.869
  89. PPN 1.264 0.545 -0.847
  90. A:
  91. scale 212.671 711.985 2373.949
  92. EEHG -0.805 0.936 0.829
  93. Georgia_Kotias.SG 0.673 -1.396 0.164
  94. Ukraine_Globular_Amphora 1.090 1.071 -1.045
  95. WSHG -1.307 -0.167 -1.481
  96.  
  97.  
  98. full rank
  99. f4info:
  100. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 48.559 taildiff: 2.00741005e-07
  101. B:
  102. scale 266.742 253.965 173.800 157.449
  103. Italy_Villabruna -0.284 0.082 1.197 -1.071
  104. Russia_Kostenki14 -0.730 0.542 0.818 -0.850
  105. Luxembourg_Loschbour -0.169 0.007 0.641 -0.605
  106. Anatolia_N -1.340 0.925 1.598 -1.375
  107. Czech_Vestonice16 -0.507 0.378 0.851 -0.782
  108. Morocco_Iberomaurusian -1.115 0.956 1.074 -1.033
  109. Russia_Shamanka_EN.SG -0.661 0.790 0.445 -0.409
  110. Georgia_Satsurblia.SG -1.387 2.267 0.219 -1.113
  111. Ganj_Dareh_N -1.525 1.420 0.487 -1.121
  112. Onge.DG -0.957 0.869 0.571 -0.728
  113. SE_Iberia_MLN -1.102 0.719 1.529 -1.271
  114. PPN -1.115 0.857 1.382 -1.177
  115. A:
  116. scale 2.000 2.000 2.000 2.000
  117. EEHG 2.000 0.000 0.000 0.000
  118. Georgia_Kotias.SG 0.000 2.000 0.000 0.000
  119. Ukraine_Globular_Amphora 0.000 0.000 2.000 0.000
  120. WSHG 0.000 0.000 0.000 2.000
  121.  
  122.  
  123. best coefficients: 0.353 0.358 0.176 0.113
  124. Jackknife mean: 0.352106012 0.357081176 0.176136315 0.114676497
  125. std. errors: 0.080 0.021 0.028 0.065
  126.  
  127. error covariance (* 1,000,000)
  128. 6408 668 -2028 -5047
  129. 668 425 -368 -725
  130. -2028 -368 806 1590
  131. -5047 -725 1590 4183
  132.  
  133.  
  134. summ: Russia_Yamnaya_Samara 4 0.000000 0.352 0.357 0.176 0.115 6408 668 -2028 -5047 425 ...
  135. -368 -725 806 1590 4183
  136.  
  137. fixed pat wt dof chisq tail prob
  138. 0000 0 9 48.559 2.00741e-07 0.353 0.358 0.176 0.113
  139. 0001 1 10 54.199 4.45525e-08 0.489 0.376 0.135 0.000
  140. 0010 1 10 94.005 8.57129e-16 0.839 0.436 0.000 -0.275 infeasible
  141. 0100 1 10 164.989 3.01874e-30 -3.426 0.000 1.283 3.143 infeasible
  142. 1000 1 10 73.399 9.74261e-12 0.000 0.326 0.283 0.392
  143. 0011 2 11 131.811 7.48336e-23 0.555 0.445 0.000 0.000
  144. 0101 2 11 505.121 0 0.780 0.000 0.220 0.000
  145. 0110 2 11 287.523 0 2.781 0.000 0.000 -1.781 infeasible
  146. 1001 2 11 465.908 0 0.000 0.828 0.172 0.000
  147. 1010 2 11 374.815 0 0.000 0.652 0.000 0.348
  148. 1100 2 11 418.114 0 0.000 0.000 0.424 0.576
  149. 0111 3 12 635.117 0 1.000 0.000 0.000 0.000
  150. 1011 3 12 507.758 0 0.000 1.000 0.000 0.000
  151. 1101 3 12 1716.117 0 0.000 0.000 1.000 0.000
  152. 1110 3 12 1137.306 0 0.000 0.000 0.000 1.000
  153. best pat: 0000 2.00741e-07 - -
  154. best pat: 1000 9.74261e-12 chi(nested): 24.840 p-value for nested model: 6.23045e-07
  155. best pat: 0011 7.48336e-23 not nested
  156. best pat: 1011 4.94732e-101 chi(nested): 375.947 p-value for nested model: 9.49407e-84
  157.  
  158. coeffs: 0.353 0.358 0.176 0.113
  159.  
  160. ## dscore:: f_4(Base, Fit, Rbase, right2)
  161. ## genstat:: f_4(Base, Fit, right1, right2)
  162.  
  163. details: EEHG Italy_Villabruna -0.001063 -2.989759
  164. details: Georgia_Kotias.SG Italy_Villabruna 0.000324 0.741077
  165. details: Ukraine_Globular_Amphora Italy_Villabruna 0.006887 19.343874
  166. details: WSHG Italy_Villabruna -0.006804 -15.959640
  167. dscore: Italy_Villabruna f4: 0.000180 Z: 0.708881
  168.  
  169. details: EEHG Russia_Kostenki14 -0.002736 -7.372706
  170. details: Georgia_Kotias.SG Russia_Kostenki14 0.002135 4.705667
  171. details: Ukraine_Globular_Amphora Russia_Kostenki14 0.004709 12.617004
  172. details: WSHG Russia_Kostenki14 -0.005401 -14.895539
  173. dscore: Russia_Kostenki14 f4: 0.000014 Z: 0.054330
  174.  
  175. details: EEHG Luxembourg_Loschbour -0.000635 -2.499452
  176. details: Georgia_Kotias.SG Luxembourg_Loschbour 0.000026 0.087338
  177. details: Ukraine_Globular_Amphora Luxembourg_Loschbour 0.003689 14.739241
  178. details: WSHG Luxembourg_Loschbour -0.003839 -14.315973
  179. dscore: Luxembourg_Loschbour f4: -0.000002 Z: -0.009250
  180.  
  181. details: EEHG Anatolia_N -0.005024 -16.182703
  182. details: Georgia_Kotias.SG Anatolia_N 0.003642 8.955029
  183. details: Ukraine_Globular_Amphora Anatolia_N 0.009194 28.987932
  184. details: WSHG Anatolia_N -0.008733 -24.604806
  185. dscore: Anatolia_N f4: 0.000156 Z: 0.667339
  186.  
  187. details: EEHG Czech_Vestonice16 -0.001902 -6.005505
  188. details: Georgia_Kotias.SG Czech_Vestonice16 0.001487 3.806383
  189. details: Ukraine_Globular_Amphora Czech_Vestonice16 0.004896 15.408030
  190. details: WSHG Czech_Vestonice16 -0.004969 -13.863165
  191. dscore: Czech_Vestonice16 f4: 0.000158 Z: 0.674236
  192.  
  193. details: EEHG Morocco_Iberomaurusian -0.004180 -12.792080
  194. details: Georgia_Kotias.SG Morocco_Iberomaurusian 0.003766 8.484802
  195. details: Ukraine_Globular_Amphora Morocco_Iberomaurusian 0.006181 18.714370
  196. details: WSHG Morocco_Iberomaurusian -0.006562 -18.581839
  197. dscore: Morocco_Iberomaurusian f4: 0.000215 Z: 0.875054
  198.  
  199. details: EEHG Russia_Shamanka_EN.SG -0.002478 -8.180880
  200. details: Georgia_Kotias.SG Russia_Shamanka_EN.SG 0.003110 7.782102
  201. details: Ukraine_Globular_Amphora Russia_Shamanka_EN.SG 0.002560 8.761762
  202. details: WSHG Russia_Shamanka_EN.SG -0.002600 -7.425741
  203. dscore: Russia_Shamanka_EN.SG f4: 0.000394 Z: 1.813497
  204.  
  205. details: EEHG Georgia_Satsurblia.SG -0.005200 -16.438873
  206. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.008925 18.906205
  207. details: Ukraine_Globular_Amphora Georgia_Satsurblia.SG 0.001257 3.887539
  208. details: WSHG Georgia_Satsurblia.SG -0.007072 -21.049170
  209. dscore: Georgia_Satsurblia.SG f4: 0.000779 Z: 3.105588
  210.  
  211. details: EEHG Ganj_Dareh_N -0.005719 -17.742335
  212. details: Georgia_Kotias.SG Ganj_Dareh_N 0.005591 13.243601
  213. details: Ukraine_Globular_Amphora Ganj_Dareh_N 0.002800 8.758187
  214. details: WSHG Ganj_Dareh_N -0.007122 -20.541539
  215. dscore: Ganj_Dareh_N f4: -0.000333 Z: -1.405120
  216.  
  217. details: EEHG Onge.DG -0.003589 -10.909416
  218. details: Georgia_Kotias.SG Onge.DG 0.003422 7.693143
  219. details: Ukraine_Globular_Amphora Onge.DG 0.003283 10.040121
  220. details: WSHG Onge.DG -0.004622 -12.520567
  221. dscore: Onge.DG f4: 0.000011 Z: 0.044895
  222.  
  223. details: EEHG SE_Iberia_MLN -0.004132 -13.592297
  224. details: Georgia_Kotias.SG SE_Iberia_MLN 0.002833 7.250119
  225. details: Ukraine_Globular_Amphora SE_Iberia_MLN 0.008797 27.729807
  226. details: WSHG SE_Iberia_MLN -0.008069 -22.585468
  227. dscore: SE_Iberia_MLN f4: 0.000186 Z: 0.817860
  228.  
  229. details: EEHG PPN -0.004180 -14.329872
  230. details: Georgia_Kotias.SG PPN 0.003376 8.846110
  231. details: Ukraine_Globular_Amphora PPN 0.007951 25.066791
  232. details: WSHG PPN -0.007475 -20.595351
  233. dscore: PPN f4: 0.000283 Z: 1.261632
  234.  
  235. gendstat: Russia_MA1_HG Italy_Villabruna 0.709
  236. gendstat: Russia_MA1_HG Russia_Kostenki14 0.054
  237. gendstat: Russia_MA1_HG Luxembourg_Loschbour -0.009
  238. gendstat: Russia_MA1_HG Anatolia_N 0.667
  239. gendstat: Russia_MA1_HG Czech_Vestonice16 0.674
  240. gendstat: Russia_MA1_HG Morocco_Iberomaurusian 0.875
  241. gendstat: Russia_MA1_HG Russia_Shamanka_EN.SG 1.813
  242. gendstat: Russia_MA1_HG Georgia_Satsurblia.SG 3.106
  243. gendstat: Russia_MA1_HG Ganj_Dareh_N -1.405
  244. gendstat: Russia_MA1_HG Onge.DG 0.045
  245. gendstat: Russia_MA1_HG SE_Iberia_MLN 0.818
  246. gendstat: Russia_MA1_HG PPN 1.262
  247. gendstat: Italy_Villabruna Russia_Kostenki14 -0.677
  248. gendstat: Italy_Villabruna Luxembourg_Loschbour -0.817
  249. gendstat: Italy_Villabruna Anatolia_N -0.119
  250. gendstat: Italy_Villabruna Czech_Vestonice16 -0.089
  251. gendstat: Italy_Villabruna Morocco_Iberomaurusian 0.150
  252. gendstat: Italy_Villabruna Russia_Shamanka_EN.SG 0.991
  253. gendstat: Italy_Villabruna Georgia_Satsurblia.SG 2.204
  254. gendstat: Italy_Villabruna Ganj_Dareh_N -2.300
  255. gendstat: Italy_Villabruna Onge.DG -0.698
  256. gendstat: Italy_Villabruna SE_Iberia_MLN 0.033
  257. gendstat: Italy_Villabruna PPN 0.460
  258. gendstat: Russia_Kostenki14 Luxembourg_Loschbour -0.063
  259. gendstat: Russia_Kostenki14 Anatolia_N 0.694
  260. gendstat: Russia_Kostenki14 Czech_Vestonice16 0.588
  261. gendstat: Russia_Kostenki14 Morocco_Iberomaurusian 0.887
  262. gendstat: Russia_Kostenki14 Russia_Shamanka_EN.SG 1.869
  263. gendstat: Russia_Kostenki14 Georgia_Satsurblia.SG 2.860
  264. gendstat: Russia_Kostenki14 Ganj_Dareh_N -1.566
  265. gendstat: Russia_Kostenki14 Onge.DG -0.014
  266. gendstat: Russia_Kostenki14 SE_Iberia_MLN 0.791
  267. gendstat: Russia_Kostenki14 PPN 1.204
  268. gendstat: Luxembourg_Loschbour Anatolia_N 0.754
  269. gendstat: Luxembourg_Loschbour Czech_Vestonice16 0.685
  270. gendstat: Luxembourg_Loschbour Morocco_Iberomaurusian 0.921
  271. gendstat: Luxembourg_Loschbour Russia_Shamanka_EN.SG 1.858
  272. gendstat: Luxembourg_Loschbour Georgia_Satsurblia.SG 3.092
  273. gendstat: Luxembourg_Loschbour Ganj_Dareh_N -1.482
  274. gendstat: Luxembourg_Loschbour Onge.DG 0.054
  275. gendstat: Luxembourg_Loschbour SE_Iberia_MLN 0.890
  276. gendstat: Luxembourg_Loschbour PPN 1.339
  277. gendstat: Anatolia_N Czech_Vestonice16 0.010
  278. gendstat: Anatolia_N Morocco_Iberomaurusian 0.365
  279. gendstat: Anatolia_N Russia_Shamanka_EN.SG 1.587
  280. gendstat: Anatolia_N Georgia_Satsurblia.SG 2.987
  281. gendstat: Anatolia_N Ganj_Dareh_N -3.403
  282. gendstat: Anatolia_N Onge.DG -0.836
  283. gendstat: Anatolia_N SE_Iberia_MLN 0.274
  284. gendstat: Anatolia_N PPN 0.917
  285. gendstat: Czech_Vestonice16 Morocco_Iberomaurusian 0.247
  286. gendstat: Czech_Vestonice16 Russia_Shamanka_EN.SG 1.108
  287. gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG 2.223
  288. gendstat: Czech_Vestonice16 Ganj_Dareh_N -2.174
  289. gendstat: Czech_Vestonice16 Onge.DG -0.619
  290. gendstat: Czech_Vestonice16 SE_Iberia_MLN 0.135
  291. gendstat: Czech_Vestonice16 PPN 0.560
  292. gendstat: Morocco_Iberomaurusian Russia_Shamanka_EN.SG 1.013
  293. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG 2.403
  294. gendstat: Morocco_Iberomaurusian Ganj_Dareh_N -3.000
  295. gendstat: Morocco_Iberomaurusian Onge.DG -1.037
  296. gendstat: Morocco_Iberomaurusian SE_Iberia_MLN -0.158
  297. gendstat: Morocco_Iberomaurusian PPN 0.372
  298. gendstat: Russia_Shamanka_EN.SG Georgia_Satsurblia.SG 1.717
  299. gendstat: Russia_Shamanka_EN.SG Ganj_Dareh_N -4.404
  300. gendstat: Russia_Shamanka_EN.SG Onge.DG -2.488
  301. gendstat: Russia_Shamanka_EN.SG SE_Iberia_MLN -1.253
  302. gendstat: Russia_Shamanka_EN.SG PPN -0.616
  303. gendstat: Georgia_Satsurblia.SG Ganj_Dareh_N -5.243
  304. gendstat: Georgia_Satsurblia.SG Onge.DG -3.319
  305. gendstat: Georgia_Satsurblia.SG SE_Iberia_MLN -2.627
  306. gendstat: Georgia_Satsurblia.SG PPN -2.175
  307. gendstat: Ganj_Dareh_N Onge.DG 1.863
  308. gendstat: Ganj_Dareh_N SE_Iberia_MLN 3.171
  309. gendstat: Ganj_Dareh_N PPN 3.416
  310. gendstat: Onge.DG SE_Iberia_MLN 0.916
  311. gendstat: Onge.DG PPN 1.325
  312. gendstat: SE_Iberia_MLN PPN 0.620
  313.  
  314. ##end of qpAdm: 272.588 seconds cpu 1441.575 Mbytes in use
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