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misnomer001

steppe_emba = ehg + chg + tarim + iran fail

misnomer001
Aug 20th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: fstatsa5.txt
  5. popleft: left
  6. popright: right
  7. details: YES
  8. allsnps: YES
  9. inbreed: NO
  10. oldallsnps: NO
  11. ## qpAdm version: 1520
  12. seed: 2128254156
  13. inbreed set NO
  14. inbreed set NO
  15.  
  16. left pops:
  17. Steppe_EMBA
  18. EHG
  19. CHG_Kotias
  20. Tarim_EMBA1
  21. Iran_GanjDareh_N
  22.  
  23. right pops:
  24. Mbuti.DG
  25. ONG.SG
  26. CHG_Satsurblia
  27. Serbia_IronGates_Mesolithic
  28. Russia_Khvalynsk_Eneolithic
  29. Russia_Shamanka_Eneolithic.SG
  30. PPN
  31. Turkey_N
  32. WSHG
  33.  
  34. codimension 1
  35. f4info:
  36. f4rank: 3 dof: 5 chisq: 17.278 tail: 0.00400121568 dofdiff: 7 chisqdiff: -17.278 taildiff: 1
  37. B:
  38. scale 1.000 1.000 1.000
  39. ONG.SG 0.461 -0.517 0.667
  40. CHG_Satsurblia -0.543 1.237 1.659
  41. Serbia_IronGates_Mesolithic 0.922 1.814 -1.609
  42. Russia_Khvalynsk_Eneolithic 1.410 0.704 -0.671
  43. Russia_Shamanka_Eneolithic.SG 0.846 -0.804 1.075
  44. PPN -0.052 0.610 -0.278
  45. Turkey_N -0.009 0.879 -0.318
  46. WSHG 1.984 -0.792 0.658
  47. A:
  48. scale 182.516 507.840 648.227
  49. EHG 0.400 0.745 -0.860
  50. CHG_Kotias -1.215 1.436 1.533
  51. Tarim_EMBA1 0.498 -0.863 0.467
  52. Iran_GanjDareh_N -1.455 -0.799 -0.832
  53.  
  54.  
  55. full rank
  56. f4info:
  57. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 5 chisqdiff: 17.278 taildiff: 0.00400121568
  58. B:
  59. scale 325.221 127.987 298.320 122.266
  60. ONG.SG -0.223 -0.400 0.735 -0.473
  61. CHG_Satsurblia -0.541 1.401 -0.751 0.008
  62. Serbia_IronGates_Mesolithic 2.158 -0.660 -0.599 -1.033
  63. Russia_Khvalynsk_Eneolithic 1.572 -1.191 0.550 -1.438
  64. Russia_Shamanka_Eneolithic.SG -0.238 -0.687 1.325 -0.853
  65. PPN 0.256 0.121 -0.567 -0.075
  66. Turkey_N 0.377 0.150 -0.719 -0.177
  67. WSHG 0.517 -1.874 1.908 -1.969
  68. A:
  69. scale 2.000 2.000 2.000 2.000
  70. EHG 2.000 0.000 0.000 0.000
  71. CHG_Kotias 0.000 2.000 0.000 0.000
  72. Tarim_EMBA1 0.000 0.000 2.000 0.000
  73. Iran_GanjDareh_N 0.000 0.000 0.000 2.000
  74.  
  75.  
  76. best coefficients: 0.341 0.134 0.405 0.121
  77. totmean: 0.341 0.134 0.405 0.121
  78. boot mean: 0.341 0.134 0.405 0.120
  79. std. errors: 0.018 0.034 0.019 0.037
  80.  
  81. error covariance (* 1,000,000)
  82. 342 -172 -286 115
  83. -172 1132 217 -1178
  84. -286 217 372 -304
  85. 115 -1178 -304 1366
  86.  
  87.  
  88. summ: Steppe_EMBA 4 0.004001 0.341 0.134 0.405 0.120 342 -172 -286 115 1132 ...
  89. 217 -1178 372 -304 1366
  90.  
  91. fixed pat wt dof chisq tail prob
  92. 0000 0 5 17.278 0.00400122 0.341 0.134 0.405 0.121
  93. 0001 1 6 32.896 1.09789e-05 0.333 0.239 0.428 0.000
  94. 0010 1 6 273.450 0 0.654 -2.169 0.000 2.515 infeasible
  95. 0100 1 6 36.804 1.92265e-06 0.359 0.000 0.381 0.260
  96. 1000 1 6 232.678 0 0.000 1.320 0.741 -1.061 infeasible
  97. 0011 2 7 431.675 0 0.723 0.277 0.000 0.000
  98. 0101 2 7 437.698 0 0.492 0.000 0.508 0.000
  99. 0110 2 7 362.723 0 0.682 0.000 0.000 0.318
  100. 1001 2 7 309.577 0 0.000 0.322 0.678 0.000
  101. 1010 2 7 306.948 0 0.000 -17.791 0.000 18.791 infeasible
  102. 1100 2 7 406.184 0 0.000 0.000 0.675 0.325
  103. 0111 3 8 793.318 0 1.000 0.000 0.000 0.000
  104. 1011 3 8 1739.627 0 0.000 1.000 0.000 0.000
  105. 1101 3 8 921.763 0 0.000 0.000 1.000 0.000
  106. 1110 3 8 2075.283 0 0.000 0.000 0.000 1.000
  107. best pat: 0000 0.00400122 - -
  108. best pat: 0100 1.92265e-06 chi(nested): 19.526 p-value for nested model: 9.92457e-06
  109. best pat: 1001 5.44558e-63 not nested
  110. best pat: 0111 5.67024e-166 not nested
  111.  
  112. coeffs: 0.341 0.134 0.405 0.121
  113.  
  114. ## dscore:: f_4(Base, Fit, Rbase, right2)
  115. ## genstat:: f_4(Base, Fit, right1, right2)
  116.  
  117. details: EHG ONG.SG -0.000685 -2.121914
  118. details: CHG_Kotias ONG.SG -0.003126 -6.808337
  119. details: Tarim_EMBA1 ONG.SG 0.002465 7.785390
  120. details: Iran_GanjDareh_N ONG.SG -0.003871 -10.797642
  121. dscore: ONG.SG f4: -0.000121 Z: -0.477316
  122.  
  123. details: EHG CHG_Satsurblia -0.001663 -3.913349
  124. details: CHG_Kotias CHG_Satsurblia 0.010943 15.216256
  125. details: Tarim_EMBA1 CHG_Satsurblia -0.002518 -6.313928
  126. details: Iran_GanjDareh_N CHG_Satsurblia 0.000069 0.140751
  127. dscore: CHG_Satsurblia f4: -0.000117 Z: -0.350104
  128.  
  129. details: EHG Serbia_IronGates_Mesolithic 0.006635 21.041269
  130. details: CHG_Kotias Serbia_IronGates_Mesolithic -0.005159 -11.493974
  131. details: Tarim_EMBA1 Serbia_IronGates_Mesolithic -0.002009 -6.615591
  132. details: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.008446 -25.561473
  133. dscore: Serbia_IronGates_Mesolithic f4: -0.000260 Z: -1.088413
  134.  
  135. details: EHG Russia_Khvalynsk_Eneolithic 0.004833 11.444898
  136. details: CHG_Kotias Russia_Khvalynsk_Eneolithic -0.009308 -17.354261
  137. details: Tarim_EMBA1 Russia_Khvalynsk_Eneolithic 0.001843 4.537685
  138. details: Iran_GanjDareh_N Russia_Khvalynsk_Eneolithic -0.011762 -26.527699
  139. dscore: Russia_Khvalynsk_Eneolithic f4: -0.000269 Z: -0.837687
  140.  
  141. details: EHG Russia_Shamanka_Eneolithic.SG -0.000730 -2.272947
  142. details: CHG_Kotias Russia_Shamanka_Eneolithic.SG -0.005371 -12.406025
  143. details: Tarim_EMBA1 Russia_Shamanka_Eneolithic.SG 0.004440 14.016240
  144. details: Iran_GanjDareh_N Russia_Shamanka_Eneolithic.SG -0.006976 -20.417765
  145. dscore: Russia_Shamanka_Eneolithic.SG f4: -0.000011 Z: -0.045003
  146.  
  147. details: EHG PPN 0.000786 2.185259
  148. details: CHG_Kotias PPN 0.000949 1.975863
  149. details: Tarim_EMBA1 PPN -0.001902 -5.510423
  150. details: Iran_GanjDareh_N PPN -0.000611 -1.633689
  151. dscore: PPN f4: -0.000449 Z: -1.616949
  152.  
  153. details: EHG Turkey_N 0.001160 4.179572
  154. details: CHG_Kotias Turkey_N 0.001173 2.964585
  155. details: Tarim_EMBA1 Turkey_N -0.002409 -8.784214
  156. details: Iran_GanjDareh_N Turkey_N -0.001450 -4.953625
  157. dscore: Turkey_N f4: -0.000598 Z: -2.811886
  158.  
  159. details: EHG WSHG 0.001589 3.799445
  160. details: CHG_Kotias WSHG -0.014645 -27.324997
  161. details: Tarim_EMBA1 WSHG 0.006395 15.620963
  162. details: Iran_GanjDareh_N WSHG -0.016104 -37.587591
  163. dscore: WSHG f4: -0.000770 Z: -2.330233
  164.  
  165. gendstat: Mbuti.DG ONG.SG -0.477
  166. gendstat: Mbuti.DG CHG_Satsurblia -0.350
  167. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -1.088
  168. gendstat: Mbuti.DG Russia_Khvalynsk_Eneolithic -0.838
  169. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG -0.045
  170. gendstat: Mbuti.DG PPN -1.617
  171. gendstat: Mbuti.DG Turkey_N -2.812
  172. gendstat: Mbuti.DG WSHG -2.330
  173. gendstat: ONG.SG CHG_Satsurblia 0.011
  174. gendstat: ONG.SG Serbia_IronGates_Mesolithic -0.535
  175. gendstat: ONG.SG Russia_Khvalynsk_Eneolithic -0.449
  176. gendstat: ONG.SG Russia_Shamanka_Eneolithic.SG 0.492
  177. gendstat: ONG.SG PPN -1.076
  178. gendstat: ONG.SG Turkey_N -1.930
  179. gendstat: ONG.SG WSHG -1.921
  180. gendstat: CHG_Satsurblia Serbia_IronGates_Mesolithic -0.438
  181. gendstat: CHG_Satsurblia Russia_Khvalynsk_Eneolithic -0.398
  182. gendstat: CHG_Satsurblia Russia_Shamanka_Eneolithic.SG 0.301
  183. gendstat: CHG_Satsurblia PPN -0.950
  184. gendstat: CHG_Satsurblia Turkey_N -1.570
  185. gendstat: CHG_Satsurblia WSHG -1.648
  186. gendstat: Serbia_IronGates_Mesolithic Russia_Khvalynsk_Eneolithic -0.034
  187. gendstat: Serbia_IronGates_Mesolithic Russia_Shamanka_Eneolithic.SG 0.943
  188. gendstat: Serbia_IronGates_Mesolithic PPN -0.767
  189. gendstat: Serbia_IronGates_Mesolithic Turkey_N -1.920
  190. gendstat: Serbia_IronGates_Mesolithic WSHG -1.661
  191. gendstat: Russia_Khvalynsk_Eneolithic Russia_Shamanka_Eneolithic.SG 0.799
  192. gendstat: Russia_Khvalynsk_Eneolithic PPN -0.532
  193. gendstat: Russia_Khvalynsk_Eneolithic Turkey_N -1.163
  194. gendstat: Russia_Khvalynsk_Eneolithic WSHG -1.579
  195. gendstat: Russia_Shamanka_Eneolithic.SG PPN -1.473
  196. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N -2.429
  197. gendstat: Russia_Shamanka_Eneolithic.SG WSHG -2.404
  198. gendstat: PPN Turkey_N -0.737
  199. gendstat: PPN WSHG -0.880
  200. gendstat: Turkey_N WSHG -0.546
  201.  
  202. ##end of qpAdm: 12.943 seconds cpu 0.971 Mbytes in use
  203.  
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