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AMASS Module

Sep 23rd, 2023
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  1.  
  2. /home/manjula/Documents/Slicer_temp_AMASSS
  3. parameters : {'inputVolume': '/home/manjula/Downloads/MG_test_scan.nii.gz', 'modelDirectory': '/none/AI Models/AMASS', 'highDefinition': False, 'skullStructure': 'MAND', 'merge': 'MERGE', 'genVtk': False, 'save_in_folder': False, 'output_folder': '/home/manjula/Downloads', 'precision': 50, 'vtk_smooth': 5, 'prediction_ID': 'Pred', 'gpu_usage': 1, 'cpu_usage': 1, 'temp_fold': '/home/manjula/Documents/Slicer_temp_AMASSS', 'SegmentInput': False, 'DCMInput': False}
  4. [VTK] AMASSS_CLI standard error:
  5. [VTK] In the future `np.bool` will be defined as the corresponding NumPy scalar.
  6. [VTK] In the future `np.bool` will be defined as the corresponding NumPy scalar.
  7. [VTK] Traceback (most recent call last):
  8. [VTK] File "/home/manjula/Documents/Software/Slicer-5.3.0-2023-08-02-linux-amd64/slicer.org/Extensions-31916/SlicerAutomatedDentalTools/lib/Slicer-5.3/cli-modules/AMASSS_CLI.py", line 99, in <module>
  9. [VTK] import itk
  10. [VTK] File "/home/manjula/Documents/Software/Slicer-5.3.0-2023-08-02-linux-amd64/lib/Python/lib/python3.9/site-packages/itk/__init__.py", line 28, in <module>
  11. [VTK] from itk.support.extras import *
  12. [VTK] File "/home/manjula/Documents/Software/Slicer-5.3.0-2023-08-02-linux-amd64/lib/Python/lib/python3.9/site-packages/itk/support/extras.py", line 35, in <module>
  13. [VTK] import itk.support.types as itkt
  14. [VTK] File "/home/manjula/Documents/Software/Slicer-5.3.0-2023-08-02-linux-amd64/lib/Python/lib/python3.9/site-packages/itk/support/types.py", line 175, in <module>
  15. [VTK] ) = itkCType.initialize_c_types_once()
  16. [VTK] File "/home/manjula/Documents/Software/Slicer-5.3.0-2023-08-02-linux-amd64/lib/Python/lib/python3.9/site-packages/itk/support/types.py", line 140, in initialize_c_types_once
  17. [VTK] _B: "itkCType" = itkCType("bool", "B", np.bool)
  18. [VTK] File "/home/manjula/Documents/Software/Slicer-5.3.0-2023-08-02-linux-amd64/lib/Python/lib/python3.9/site-packages/numpy/__init__.py", line 313, in __getattr__
  19. [VTK] raise AttributeError(__former_attrs__[attr])
  20. [VTK] AttributeError: module 'numpy' has no attribute 'bool'.
  21. [VTK] `np.bool` was a deprecated alias for the builtin `bool`. To avoid this error in existing code, use `bool` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.bool_` here.
  22. [VTK] The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
  23. [VTK] https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
  24. [VTK] AMASSS_CLI completed with errors
  25. Importing librairies...
  26. No module named 'logic'
  27.  
  28.  
  29.  
  30. ========= ERROR =========
  31.  
  32. CLI execution failed:
  33.  
  34. In the future `np.bool` will be defined as the corresponding NumPy scalar.
  35. In the future `np.bool` will be defined as the corresponding NumPy scalar.
  36. Traceback (most recent call last):
  37. File "/home/manjula/Documents/Software/Slicer-5.3.0-2023-08-02-linux-amd64/slicer.org/Extensions-31916/SlicerAutomatedDentalTools/lib/Slicer-5.3/cli-modules/AMASSS_CLI.py", line 99, in <module>
  38. import itk
  39. File "/home/manjula/Documents/Software/Slicer-5.3.0-2023-08-02-linux-amd64/lib/Python/lib/python3.9/site-packages/itk/__init__.py", line 28, in <module>
  40. from itk.support.extras import *
  41. File "/home/manjula/Documents/Software/Slicer-5.3.0-2023-08-02-linux-amd64/lib/Python/lib/python3.9/site-packages/itk/support/extras.py", line 35, in <module>
  42. import itk.support.types as itkt
  43. File "/home/manjula/Documents/Software/Slicer-5.3.0-2023-08-02-linux-amd64/lib/Python/lib/python3.9/site-packages/itk/support/types.py", line 175, in <module>
  44. ) = itkCType.initialize_c_types_once()
  45. File "/home/manjula/Documents/Software/Slicer-5.3.0-2023-08-02-linux-amd64/lib/Python/lib/python3.9/site-packages/itk/support/types.py", line 140, in initialize_c_types_once
  46. _B: "itkCType" = itkCType("bool", "B", np.bool)
  47. File "/home/manjula/Documents/Software/Slicer-5.3.0-2023-08-02-linux-amd64/lib/Python/lib/python3.9/site-packages/numpy/__init__.py", line 313, in __getattr__
  48. raise AttributeError(__former_attrs__[attr])
  49. AttributeError: module 'numpy' has no attribute 'bool'.
  50. `np.bool` was a deprecated alias for the builtin `bool`. To avoid this error in existing code, use `bool` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.bool_` here.
  51. The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
  52. https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
  53.  
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