55) Error:
TypeError: can't convert Array into String
    /Users/agrimm/ruby/jruby/jruby-1.4.0/lib/ruby/gems/1.8/gems/bio-1.4.0.5000/lib/bio/command.rb:188:in `call_command_popen'
    /Users/agrimm/ruby/jruby/jruby-1.4.0/lib/ruby/gems/1.8/gems/bio-1.4.0.5000/lib/bio/command.rb:147:in `call_command'
    /Users/agrimm/ruby/jruby/jruby-1.4.0/lib/ruby/gems/1.8/gems/bio-1.4.0.5000/lib/bio/appl/clustalw.rb:209:in `exec_local'
    /Users/agrimm/ruby/jruby/jruby-1.4.0/lib/ruby/gems/1.8/gems/bio-1.4.0.5000/lib/bio/appl/clustalw.rb:177:in `query_by_filename'
    /Users/agrimm/ruby/jruby/jruby-1.4.0/lib/ruby/gems/1.8/gems/bio-1.4.0.5000/lib/bio/appl/clustalw.rb:151:in `query_string'
    /Users/agrimm/ruby/jruby/jruby-1.4.0/lib/ruby/gems/1.8/gems/bio-1.4.0.5000/lib/bio/appl/clustalw.rb:127:in `query_align'
    /Users/agrimm/ruby/jruby/jruby-1.4.0/lib/ruby/gems/1.8/gems/bio-1.4.0.5000/lib/bio/appl/clustalw.rb:110:in `query'
    /Users/agrimm/ruby/jruby/jruby-1.4.0/lib/ruby/gems/1.8/gems/bio-1.4.0.5000/lib/bio/alignment.rb:2079:in `do_align'

jruby --1.9 -J-Djruby.fork.enabled=true test/test_all.rb