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misnomer001

steppe eneolithic wang right pops geoksyur pass

misnomer001
Feb 20th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1886952337
  4. read 1073741824 bytes
  5. read 1350149235 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Steppe_Eneolithic
  11. EEHG
  12. Geoksyur_EN
  13. Georgia_Kotias.SG
  14.  
  15. right pops:
  16. Mbuti.DG
  17. Ust_Ishim.DG
  18. Russia_Kostenki14
  19. Russia_MA1_HG
  20. Han.DG
  21. Onge.DG
  22. Italy_Villabruna
  23. Czech_Vestonice16
  24. Iberia_ElMiron
  25. Ethiopia_4500BP.SG
  26. Karitiana.DG
  27. Natufian
  28. Pinarbasi
  29. Ganj_Dareh_N
  30. Georgia_Satsurblia.SG
  31.  
  32. 0 Steppe_Eneolithic 3
  33. 1 EEHG 5
  34. 2 Geoksyur_EN 21
  35. 3 Georgia_Kotias.SG 1
  36. 4 Mbuti.DG 5
  37. 5 Ust_Ishim.DG 1
  38. 6 Russia_Kostenki14 1
  39. 7 Russia_MA1_HG 1
  40. 8 Han.DG 4
  41. 9 Onge.DG 2
  42. 10 Italy_Villabruna 1
  43. 11 Czech_Vestonice16 1
  44. 12 Iberia_ElMiron 1
  45. 13 Ethiopia_4500BP.SG 1
  46. 14 Karitiana.DG 4
  47. 15 Natufian 6
  48. 16 Pinarbasi 1
  49. 17 Ganj_Dareh_N 8
  50. 18 Georgia_Satsurblia.SG 1
  51. jackknife block size: 0.050
  52. snps: 1150542 indivs: 68
  53. number of blocks for block jackknife: 552
  54. ## ncols: 1150542
  55. coverage: Steppe_Eneolithic 1017729
  56. coverage: EEHG 1052093
  57. coverage: Geoksyur_EN 1018577
  58. coverage: Georgia_Kotias.SG 1149097
  59. coverage: Mbuti.DG 1150376
  60. coverage: Ust_Ishim.DG 1062044
  61. coverage: Russia_Kostenki14 1068326
  62. coverage: Russia_MA1_HG 805960
  63. coverage: Han.DG 1150414
  64. coverage: Onge.DG 1120748
  65. coverage: Italy_Villabruna 883779
  66. coverage: Czech_Vestonice16 732091
  67. coverage: Iberia_ElMiron 626974
  68. coverage: Ethiopia_4500BP.SG 1149598
  69. coverage: Karitiana.DG 1150373
  70. coverage: Natufian 535079
  71. coverage: Pinarbasi 892975
  72. coverage: Ganj_Dareh_N 1057358
  73. coverage: Georgia_Satsurblia.SG 801311
  74. dof (jackknife): 467.046
  75. numsnps used: 1150542
  76. codimension 1
  77. f4info:
  78. f4rank: 2 dof: 12 chisq: 15.276 tail: 0.226667892 dofdiff: 14 chisqdiff: -15.276 taildiff: 1
  79. B:
  80. scale 1.000 1.000
  81. Ust_Ishim.DG 0.326 0.309
  82. Russia_Kostenki14 0.925 0.423
  83. Russia_MA1_HG 1.729 0.303
  84. Han.DG 0.597 0.075
  85. Onge.DG 0.449 0.082
  86. Italy_Villabruna 1.726 0.936
  87. Czech_Vestonice16 0.891 0.180
  88. Iberia_ElMiron 1.041 0.584
  89. Ethiopia_4500BP.SG 0.006 0.054
  90. Karitiana.DG 1.562 0.247
  91. Natufian 0.038 -0.123
  92. Pinarbasi 0.399 0.640
  93. Ganj_Dareh_N -0.948 -1.297
  94. Georgia_Satsurblia.SG -1.067 3.194
  95. A:
  96. scale 424.734 1243.173
  97. EEHG 1.045 0.026
  98. Geoksyur_EN -0.824 -1.105
  99. Georgia_Kotias.SG -1.109 1.333
  100.  
  101.  
  102. full rank
  103. f4info:
  104. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 15.276 taildiff: 0.226667892
  105. B:
  106. scale 425.036 416.428 352.223
  107. Ust_Ishim.DG 0.127 -0.553 -0.405
  108. Russia_Kostenki14 0.808 -1.013 -0.843
  109. Russia_MA1_HG 1.517 -1.733 -1.747
  110. Han.DG 0.594 -0.565 -0.564
  111. Onge.DG 0.338 -0.504 -0.484
  112. Italy_Villabruna 1.760 -1.798 -1.344
  113. Czech_Vestonice16 0.986 -0.772 -0.746
  114. Iberia_ElMiron 0.942 -1.180 -0.904
  115. Ethiopia_4500BP.SG -0.100 -0.106 -0.042
  116. Karitiana.DG 1.610 -1.433 -1.394
  117. Natufian -0.014 -0.029 -0.160
  118. Pinarbasi 0.357 -0.625 -0.197
  119. Ganj_Dareh_N -1.191 1.112 0.206
  120. Georgia_Satsurblia.SG -1.208 -0.425 2.070
  121. A:
  122. scale 1.732 1.732 1.732
  123. EEHG 1.732 0.000 0.000
  124. Geoksyur_EN 0.000 1.732 0.000
  125. Georgia_Kotias.SG 0.000 0.000 1.732
  126.  
  127.  
  128. best coefficients: 0.476 0.291 0.232
  129. Jackknife mean: 0.476349225 0.291616166 0.232034609
  130. std. errors: 0.017 0.031 0.030
  131.  
  132. error covariance (* 1,000,000)
  133. 273 -158 -114
  134. -158 945 -787
  135. -114 -787 901
  136.  
  137.  
  138. summ: Steppe_Eneolithic 3 0.226668 0.476 0.292 0.232 273 -158 -114 945 -787 ...
  139. 901
  140.  
  141. fixed pat wt dof chisq tail prob
  142. 000 0 12 15.276 0.226668 0.476 0.291 0.232
  143. 001 1 13 76.810 4.37456e-11 0.507 0.493 0.000
  144. 010 1 13 80.692 8.17251e-12 0.511 0.000 0.489
  145. 100 1 13 345.524 0 0.000 -1.749 2.749 infeasible
  146. 011 2 14 660.590 0 1.000 0.000 0.000
  147. 101 2 14 836.590 0 0.000 1.000 0.000
  148. 110 2 14 420.380 0 0.000 0.000 1.000
  149. best pat: 000 0.226668 - -
  150. best pat: 001 4.37456e-11 chi(nested): 61.533 p-value for nested model: 4.35294e-15
  151. best pat: 110 6.40551e-81 not nested
  152.  
  153. coeffs: 0.476 0.291 0.232
  154.  
  155. ## dscore:: f_4(Base, Fit, Rbase, right2)
  156. ## genstat:: f_4(Base, Fit, right1, right2)
  157.  
  158. details: EEHG Ust_Ishim.DG 0.000298 0.896477
  159. details: Geoksyur_EN Ust_Ishim.DG -0.001327 -4.621237
  160. details: Georgia_Kotias.SG Ust_Ishim.DG -0.001150 -2.596037
  161. dscore: Ust_Ishim.DG f4: -0.000512 Z: -1.943605
  162.  
  163. details: EEHG Russia_Kostenki14 0.001901 4.909241
  164. details: Geoksyur_EN Russia_Kostenki14 -0.002432 -8.259900
  165. details: Georgia_Kotias.SG Russia_Kostenki14 -0.002394 -4.919518
  166. dscore: Russia_Kostenki14 f4: -0.000360 Z: -1.266940
  167.  
  168. details: EEHG Russia_MA1_HG 0.003570 9.903214
  169. details: Geoksyur_EN Russia_MA1_HG -0.004161 -13.377991
  170. details: Georgia_Kotias.SG Russia_MA1_HG -0.004959 -10.413107
  171. dscore: Russia_MA1_HG f4: -0.000664 Z: -2.366736
  172.  
  173. details: EEHG Han.DG 0.001397 5.061922
  174. details: Geoksyur_EN Han.DG -0.001357 -5.673982
  175. details: Georgia_Kotias.SG Han.DG -0.001603 -4.329754
  176. dscore: Han.DG f4: -0.000102 Z: -0.473887
  177.  
  178. details: EEHG Onge.DG 0.000796 2.589756
  179. details: Geoksyur_EN Onge.DG -0.001210 -4.643932
  180. details: Georgia_Kotias.SG Onge.DG -0.001374 -3.314238
  181. dscore: Onge.DG f4: -0.000293 Z: -1.207489
  182.  
  183. details: EEHG Italy_Villabruna 0.004140 11.109932
  184. details: Geoksyur_EN Italy_Villabruna -0.004318 -14.299908
  185. details: Georgia_Kotias.SG Italy_Villabruna -0.003817 -8.029942
  186. dscore: Italy_Villabruna f4: -0.000173 Z: -0.615862
  187.  
  188. details: EEHG Czech_Vestonice16 0.002319 7.186652
  189. details: Geoksyur_EN Czech_Vestonice16 -0.001853 -6.729730
  190. details: Georgia_Kotias.SG Czech_Vestonice16 -0.002119 -4.964613
  191. dscore: Czech_Vestonice16 f4: 0.000072 Z: 0.283997
  192.  
  193. details: EEHG Iberia_ElMiron 0.002215 7.602581
  194. details: Geoksyur_EN Iberia_ElMiron -0.002833 -11.175813
  195. details: Georgia_Kotias.SG Iberia_ElMiron -0.002566 -6.760293
  196. dscore: Iberia_ElMiron f4: -0.000367 Z: -1.634581
  197.  
  198. details: EEHG Ethiopia_4500BP.SG -0.000236 -0.971709
  199. details: Geoksyur_EN Ethiopia_4500BP.SG -0.000253 -1.250967
  200. details: Georgia_Kotias.SG Ethiopia_4500BP.SG -0.000119 -0.370267
  201. dscore: Ethiopia_4500BP.SG f4: -0.000214 Z: -1.123225
  202.  
  203. details: EEHG Karitiana.DG 0.003788 11.203594
  204. details: Geoksyur_EN Karitiana.DG -0.003442 -12.635969
  205. details: Georgia_Kotias.SG Karitiana.DG -0.003958 -9.432375
  206. dscore: Karitiana.DG f4: -0.000118 Z: -0.461577
  207.  
  208. details: EEHG Natufian -0.000032 -0.135251
  209. details: Geoksyur_EN Natufian -0.000069 -0.327267
  210. details: Georgia_Kotias.SG Natufian -0.000456 -1.569234
  211. dscore: Natufian f4: -0.000141 Z: -0.761636
  212.  
  213. details: EEHG Pinarbasi 0.000839 2.692032
  214. details: Geoksyur_EN Pinarbasi -0.001501 -5.039757
  215. details: Georgia_Kotias.SG Pinarbasi -0.000560 -1.287554
  216. dscore: Pinarbasi f4: -0.000168 Z: -0.659452
  217.  
  218. details: EEHG Ganj_Dareh_N -0.002801 -10.250849
  219. details: Geoksyur_EN Ganj_Dareh_N 0.002669 11.043607
  220. details: Georgia_Kotias.SG Ganj_Dareh_N 0.000586 1.587623
  221. dscore: Ganj_Dareh_N f4: -0.000420 Z: -1.924455
  222.  
  223. details: EEHG Georgia_Satsurblia.SG -0.002843 -8.751142
  224. details: Geoksyur_EN Georgia_Satsurblia.SG -0.001020 -3.602001
  225. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.005878 11.736852
  226. dscore: Georgia_Satsurblia.SG f4: -0.000285 Z: -1.093114
  227.  
  228. gendstat: Mbuti.DG Ust_Ishim.DG -1.944
  229. gendstat: Mbuti.DG Russia_Kostenki14 -1.267
  230. gendstat: Mbuti.DG Russia_MA1_HG -2.367
  231. gendstat: Mbuti.DG Han.DG -0.474
  232. gendstat: Mbuti.DG Onge.DG -1.207
  233. gendstat: Mbuti.DG Italy_Villabruna -0.616
  234. gendstat: Mbuti.DG Czech_Vestonice16 0.284
  235. gendstat: Mbuti.DG Iberia_ElMiron -1.635
  236. gendstat: Mbuti.DG Ethiopia_4500BP.SG -1.123
  237. gendstat: Mbuti.DG Karitiana.DG -0.462
  238. gendstat: Mbuti.DG Natufian -0.762
  239. gendstat: Mbuti.DG Pinarbasi -0.659
  240. gendstat: Mbuti.DG Ganj_Dareh_N -1.924
  241. gendstat: Mbuti.DG Georgia_Satsurblia.SG -1.093
  242. gendstat: Ust_Ishim.DG Russia_Kostenki14 0.460
  243. gendstat: Ust_Ishim.DG Russia_MA1_HG -0.445
  244. gendstat: Ust_Ishim.DG Han.DG 1.494
  245. gendstat: Ust_Ishim.DG Onge.DG 0.756
  246. gendstat: Ust_Ishim.DG Italy_Villabruna 1.011
  247. gendstat: Ust_Ishim.DG Czech_Vestonice16 1.833
  248. gendstat: Ust_Ishim.DG Iberia_ElMiron 0.477
  249. gendstat: Ust_Ishim.DG Ethiopia_4500BP.SG 0.976
  250. gendstat: Ust_Ishim.DG Karitiana.DG 1.260
  251. gendstat: Ust_Ishim.DG Natufian 1.280
  252. gendstat: Ust_Ishim.DG Pinarbasi 1.032
  253. gendstat: Ust_Ishim.DG Ganj_Dareh_N 0.324
  254. gendstat: Ust_Ishim.DG Georgia_Satsurblia.SG 0.679
  255. gendstat: Russia_Kostenki14 Russia_MA1_HG -0.897
  256. gendstat: Russia_Kostenki14 Han.DG 0.913
  257. gendstat: Russia_Kostenki14 Onge.DG 0.212
  258. gendstat: Russia_Kostenki14 Italy_Villabruna 0.551
  259. gendstat: Russia_Kostenki14 Czech_Vestonice16 1.339
  260. gendstat: Russia_Kostenki14 Iberia_ElMiron -0.023
  261. gendstat: Russia_Kostenki14 Ethiopia_4500BP.SG 0.447
  262. gendstat: Russia_Kostenki14 Karitiana.DG 0.781
  263. gendstat: Russia_Kostenki14 Natufian 0.731
  264. gendstat: Russia_Kostenki14 Pinarbasi 0.597
  265. gendstat: Russia_Kostenki14 Ganj_Dareh_N -0.211
  266. gendstat: Russia_Kostenki14 Georgia_Satsurblia.SG 0.213
  267. gendstat: Russia_MA1_HG Han.DG 1.990
  268. gendstat: Russia_MA1_HG Onge.DG 1.220
  269. gendstat: Russia_MA1_HG Italy_Villabruna 1.487
  270. gendstat: Russia_MA1_HG Czech_Vestonice16 2.332
  271. gendstat: Russia_MA1_HG Iberia_ElMiron 0.940
  272. gendstat: Russia_MA1_HG Ethiopia_4500BP.SG 1.403
  273. gendstat: Russia_MA1_HG Karitiana.DG 1.850
  274. gendstat: Russia_MA1_HG Natufian 1.718
  275. gendstat: Russia_MA1_HG Pinarbasi 1.509
  276. gendstat: Russia_MA1_HG Ganj_Dareh_N 0.823
  277. gendstat: Russia_MA1_HG Georgia_Satsurblia.SG 1.079
  278. gendstat: Han.DG Onge.DG -0.866
  279. gendstat: Han.DG Italy_Villabruna -0.236
  280. gendstat: Han.DG Czech_Vestonice16 0.638
  281. gendstat: Han.DG Iberia_ElMiron -0.965
  282. gendstat: Han.DG Ethiopia_4500BP.SG -0.438
  283. gendstat: Han.DG Karitiana.DG -0.073
  284. gendstat: Han.DG Natufian -0.159
  285. gendstat: Han.DG Pinarbasi -0.226
  286. gendstat: Han.DG Ganj_Dareh_N -1.398
  287. gendstat: Han.DG Georgia_Satsurblia.SG -0.616
  288. gendstat: Onge.DG Italy_Villabruna 0.361
  289. gendstat: Onge.DG Czech_Vestonice16 1.229
  290. gendstat: Onge.DG Iberia_ElMiron -0.254
  291. gendstat: Onge.DG Ethiopia_4500BP.SG 0.288
  292. gendstat: Onge.DG Karitiana.DG 0.633
  293. gendstat: Onge.DG Natufian 0.592
  294. gendstat: Onge.DG Pinarbasi 0.419
  295. gendstat: Onge.DG Ganj_Dareh_N -0.496
  296. gendstat: Onge.DG Georgia_Satsurblia.SG 0.024
  297. gendstat: Italy_Villabruna Czech_Vestonice16 0.745
  298. gendstat: Italy_Villabruna Iberia_ElMiron -0.641
  299. gendstat: Italy_Villabruna Ethiopia_4500BP.SG -0.124
  300. gendstat: Italy_Villabruna Karitiana.DG 0.167
  301. gendstat: Italy_Villabruna Natufian 0.109
  302. gendstat: Italy_Villabruna Pinarbasi 0.017
  303. gendstat: Italy_Villabruna Ganj_Dareh_N -0.800
  304. gendstat: Italy_Villabruna Georgia_Satsurblia.SG -0.313
  305. gendstat: Czech_Vestonice16 Iberia_ElMiron -1.560
  306. gendstat: Czech_Vestonice16 Ethiopia_4500BP.SG -0.979
  307. gendstat: Czech_Vestonice16 Karitiana.DG -0.597
  308. gendstat: Czech_Vestonice16 Natufian -0.788
  309. gendstat: Czech_Vestonice16 Pinarbasi -0.767
  310. gendstat: Czech_Vestonice16 Ganj_Dareh_N -1.690
  311. gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG -1.072
  312. gendstat: Iberia_ElMiron Ethiopia_4500BP.SG 0.557
  313. gendstat: Iberia_ElMiron Karitiana.DG 0.831
  314. gendstat: Iberia_ElMiron Natufian 0.894
  315. gendstat: Iberia_ElMiron Pinarbasi 0.684
  316. gendstat: Iberia_ElMiron Ganj_Dareh_N -0.190
  317. gendstat: Iberia_ElMiron Georgia_Satsurblia.SG 0.252
  318. gendstat: Ethiopia_4500BP.SG Karitiana.DG 0.321
  319. gendstat: Ethiopia_4500BP.SG Natufian 0.288
  320. gendstat: Ethiopia_4500BP.SG Pinarbasi 0.156
  321. gendstat: Ethiopia_4500BP.SG Ganj_Dareh_N -0.792
  322. gendstat: Ethiopia_4500BP.SG Georgia_Satsurblia.SG -0.231
  323. gendstat: Karitiana.DG Natufian -0.082
  324. gendstat: Karitiana.DG Pinarbasi -0.154
  325. gendstat: Karitiana.DG Ganj_Dareh_N -1.117
  326. gendstat: Karitiana.DG Georgia_Satsurblia.SG -0.493
  327. gendstat: Natufian Pinarbasi -0.100
  328. gendstat: Natufian Ganj_Dareh_N -1.154
  329. gendstat: Natufian Georgia_Satsurblia.SG -0.492
  330. gendstat: Pinarbasi Ganj_Dareh_N -0.901
  331. gendstat: Pinarbasi Georgia_Satsurblia.SG -0.361
  332. gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG 0.509
  333.  
  334. ##end of qpAdm: 241.692 seconds cpu 1478.062 Mbytes in use
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