<In-Universe Chronology (as of June 2017)>
(Frank Herbert = F.H.; Brian Herbert = B.H.; Kevin J. Anderson = K.J.A.)

"The Butlerian Jihad"
Legends of Dune: Hunting Harkonnens (Short-Story) by B.H. & K.J.A
Legends of Dune: The Butlerian Jihad by B.H. & K.J.A
Legends of Dune: Whipping Mek (Short-Story) by B.H. & K.J.A
Legends of Dune: The Machine Crusade by B.H. & K.J.A
Legends of Dune: The Faces of a Martyr (Short-Story) by B.H. & K.J.A
Legends of Dune: The Battle of Corrin by B.H. & K.J.A
Great Schools of Dune: Sisterhood of Dune by B.H. & K.J.A
Great Schools of Dune: Mentats of Dune by B.H. & K.J.A
Great Schools of Dune: Red Plague (Short-Story) by B.H. & K.J.A
Great Schools of Dune: Navigators of Dune by B.H. & K.J.A

"The Corrino-led Imperium:"
Prelude to Dune: House Atreides by B.H. & K.J.A
Prelude to Dune: House Harkonnen by B.H. & K.J.A
Prelude to Dune: House Corrino by B.H. & K.J.A
Heroes of Dune: Paul of Dune (parts II, IV, VI) by B.H. & K.J.A
Wedding Silk (Short-Story, in "Tales of Dune") by B.H. & K.J.A
Heroes of Dune: The Winds of Dune (Part II) by B.H. & K.J.A

"The rise of the Atreides"
Original series: Dune by F.H.
A Whisper of Caladan Seas (Short-Story, in the companion book "The Road to Dune") by B.H. & K.J.A
Heroes of Dune: Paul of Dune by B.H. & K.J.A
Heroes of Dune: The Winds of Dune (part IV) by B.H. & K.J.A
The Road to Dune (Short-Story, in "Eye") by F.H.
Original series: Dune Messiah by F.H.
Heroes of Dune: The Winds of Dune (parts I, III, V) by B.H. & K.J.A
Original series: Children of Dune by F.H.

"The reign the God Emperor"
Original series: God Emperor of Dune by F.H.

"The return from the Scattering"
Original series: Heretics of Dune by F.H.
Sea Child (Short-Story, in "Tales of Dune") by B.H. & K.J.A
Original series: Chapterhouse: Dune by F.H.
Dune Chronicles - Hunters of Dune by B.H. & K.J.A
Treasure in the Sand (Short-Story, in "Tales of Dune") by B.H. & K.J.A
Dune Chronicles - Sandworms of Dune by B.H. & K.J.A