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misnomer001

swat_nosteppe pass

misnomer001
Aug 12th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: NO
  9. oldallsnps: NO
  10. S1: newpush
  11. S1X: newpush
  12. indivname: newpush.ind
  13. snpname: newpush.snp
  14. genotypename: newpush.geno
  15. ## qpAdm version: 1520
  16. seed: 1088206360
  17. inbreed set NO
  18. inbreed set NO
  19. tmp: /tmp/fsx.19366
  20.  
  21. left pops:
  22. Swat_nosteppe
  23. IVCp1
  24. Tarim_EMBA1
  25. Uzbekistan_Dzharkutan_BA_1
  26.  
  27. right pops:
  28. Mbuti.DG
  29. CHG
  30. EHG
  31. China_YR_MN
  32. Turkey_Boncuklu_N
  33. Russia_Shamanka_Eneolithic.SG
  34. WSHG
  35. Turkey_N
  36. PPN
  37. Serbia_IronGates_Mesolithic
  38. Russia_MLBA_Sintashta
  39. Iran_GanjDareh_N
  40. ONG.SG
  41.  
  42. codimension 1
  43. f4info:
  44. f4rank: 2 dof: 10 chisq: 16.253 tail: 0.0926163268 dofdiff: 12 chisqdiff: -16.253 taildiff: 1
  45. B:
  46. scale 1.000 1.000
  47. CHG 0.018 1.204
  48. EHG 1.926 0.047
  49. China_YR_MN 0.609 -1.137
  50. Turkey_Boncuklu_N 0.056 0.963
  51. Russia_Shamanka_Eneolithic.SG 0.927 -1.073
  52. WSHG 2.466 -0.420
  53. Turkey_N -0.088 1.227
  54. PPN -0.116 1.247
  55. Serbia_IronGates_Mesolithic 0.647 0.541
  56. Russia_MLBA_Sintashta 0.632 0.771
  57. Iran_GanjDareh_N -0.219 1.365
  58. ONG.SG 0.299 -1.090
  59. A:
  60. scale 64.879 174.844
  61. IVCp1 -0.108 -0.500
  62. Tarim_EMBA1 1.721 0.211
  63. Uzbekistan_Dzharkutan_BA_1 0.166 1.645
  64.  
  65.  
  66. full rank
  67. f4info:
  68. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 16.253 taildiff: 0.0926163268
  69. B:
  70. scale 270.039 38.033 106.702
  71. CHG -0.738 0.094 1.299
  72. EHG -1.217 1.947 0.578
  73. China_YR_MN -0.031 0.552 -1.016
  74. Turkey_Boncuklu_N -1.029 0.102 1.020
  75. Russia_Shamanka_Eneolithic.SG 0.055 0.889 -0.826
  76. WSHG -0.887 2.472 0.284
  77. Turkey_N -1.306 -0.038 1.205
  78. PPN -1.253 -0.063 1.237
  79. Serbia_IronGates_Mesolithic -1.329 0.661 0.689
  80. Russia_MLBA_Sintashta -1.227 0.671 0.950
  81. Iran_GanjDareh_N -1.002 -0.139 1.360
  82. ONG.SG 0.758 0.268 -0.966
  83. A:
  84. scale 1.732 1.732 1.732
  85. IVCp1 1.732 0.000 0.000
  86. Tarim_EMBA1 0.000 1.732 0.000
  87. Uzbekistan_Dzharkutan_BA_1 0.000 0.000 1.732
  88.  
  89.  
  90. best coefficients: 0.750 0.025 0.225
  91. totmean: 0.750 0.025 0.225
  92. boot mean: 0.751 0.025 0.224
  93. std. errors: 0.031 0.011 0.028
  94.  
  95. error covariance (* 1,000,000)
  96. 962 -155 -807
  97. -155 112 43
  98. -807 43 764
  99.  
  100.  
  101. summ: Swat_nosteppe 3 0.092616 0.751 0.025 0.224 962 -155 -807 112 43 ...
  102. 764
  103.  
  104. fixed pat wt dof chisq tail prob
  105. 000 0 10 16.253 0.0926163 0.750 0.025 0.225
  106. 001 1 11 74.738 1.52141e-11 0.998 0.002 0.000
  107. 010 1 11 23.158 0.016789 0.792 0.000 0.208
  108. 100 1 11 1098.592 0 0.000 0.164 0.836
  109. 011 2 12 64.454 3.43865e-09 1.000 0.000 0.000
  110. 101 2 12 4693.514 0 0.000 1.000 0.000
  111. 110 2 12 1331.845 0 0.000 0.000 1.000
  112. best pat: 000 0.0926163 - -
  113. best pat: 010 0.016789 chi(nested): 6.905 p-value for nested model: 0.00859464
  114. best pat: 011 3.43865e-09 chi(nested): 41.296 p-value for nested model: 1.3083e-10
  115.  
  116. coeffs: 0.750 0.025 0.225
  117.  
  118. ## dscore:: f_4(Base, Fit, Rbase, right2)
  119. ## genstat:: f_4(Base, Fit, right1, right2)
  120.  
  121. details: IVCp1 CHG -0.002735 -2.273588
  122. details: Tarim_EMBA1 CHG 0.002466 2.155469
  123. details: Uzbekistan_Dzharkutan_BA_1 CHG 0.012170 13.619817
  124. dscore: CHG f4: 0.000746 Z: 0.756915
  125.  
  126. details: IVCp1 EHG -0.004506 -3.685053
  127. details: Tarim_EMBA1 EHG 0.051199 39.014192
  128. details: Uzbekistan_Dzharkutan_BA_1 EHG 0.005418 6.442814
  129. dscore: EHG f4: -0.000860 Z: -0.866014
  130.  
  131. details: IVCp1 China_YR_MN -0.000115 -0.098828
  132. details: Tarim_EMBA1 China_YR_MN 0.014506 12.754905
  133. details: Uzbekistan_Dzharkutan_BA_1 China_YR_MN -0.009524 -12.044413
  134. dscore: China_YR_MN f4: -0.001857 Z: -1.982812
  135.  
  136. details: IVCp1 Turkey_Boncuklu_N -0.003809 -3.276482
  137. details: Tarim_EMBA1 Turkey_Boncuklu_N 0.002673 2.573657
  138. details: Uzbekistan_Dzharkutan_BA_1 Turkey_Boncuklu_N 0.009563 12.345545
  139. dscore: Turkey_Boncuklu_N f4: -0.000640 Z: -0.680088
  140.  
  141. details: IVCp1 Russia_Shamanka_Eneolithic.SG 0.000205 0.204908
  142. details: Tarim_EMBA1 Russia_Shamanka_Eneolithic.SG 0.023369 21.803200
  143. details: Uzbekistan_Dzharkutan_BA_1 Russia_Shamanka_Eneolithic.SG -0.007743 -10.096184
  144. dscore: Russia_Shamanka_Eneolithic.SG f4: -0.000992 Z: -1.221484
  145.  
  146. details: IVCp1 WSHG -0.003286 -2.572386
  147. details: Tarim_EMBA1 WSHG 0.065000 48.702062
  148. details: Uzbekistan_Dzharkutan_BA_1 WSHG 0.002663 3.009342
  149. dscore: WSHG f4: -0.000213 Z: -0.206577
  150.  
  151. details: IVCp1 Turkey_N -0.004836 -4.918467
  152. details: Tarim_EMBA1 Turkey_N -0.000998 -1.093240
  153. details: Uzbekistan_Dzharkutan_BA_1 Turkey_N 0.011297 17.312813
  154. dscore: Turkey_N f4: -0.001114 Z: -1.412744
  155.  
  156. details: IVCp1 PPN -0.004638 -3.633895
  157. details: Tarim_EMBA1 PPN -0.001653 -1.488960
  158. details: Uzbekistan_Dzharkutan_BA_1 PPN 0.011593 14.064503
  159. dscore: PPN f4: -0.000916 Z: -0.892610
  160.  
  161. details: IVCp1 Serbia_IronGates_Mesolithic -0.004922 -4.482930
  162. details: Tarim_EMBA1 Serbia_IronGates_Mesolithic 0.017386 16.249889
  163. details: Uzbekistan_Dzharkutan_BA_1 Serbia_IronGates_Mesolithic 0.006454 9.025210
  164. dscore: Serbia_IronGates_Mesolithic f4: -0.001799 Z: -2.031056
  165.  
  166. details: IVCp1 Russia_MLBA_Sintashta -0.004543 -4.676737
  167. details: Tarim_EMBA1 Russia_MLBA_Sintashta 0.017630 19.074323
  168. details: Uzbekistan_Dzharkutan_BA_1 Russia_MLBA_Sintashta 0.008907 14.162315
  169. dscore: Russia_MLBA_Sintashta f4: -0.000958 Z: -1.217022
  170.  
  171. details: IVCp1 Iran_GanjDareh_N -0.003711 -3.429702
  172. details: Tarim_EMBA1 Iran_GanjDareh_N -0.003662 -3.610106
  173. details: Uzbekistan_Dzharkutan_BA_1 Iran_GanjDareh_N 0.012742 17.056219
  174. dscore: Iran_GanjDareh_N f4: -0.000014 Z: -0.016016
  175.  
  176. details: IVCp1 ONG.SG 0.002806 2.545085
  177. details: Tarim_EMBA1 ONG.SG 0.007051 6.663329
  178. details: Uzbekistan_Dzharkutan_BA_1 ONG.SG -0.009053 -12.118809
  179. dscore: ONG.SG f4: 0.000250 Z: 0.278770
  180.  
  181. gendstat: Mbuti.DG CHG 0.757
  182. gendstat: Mbuti.DG EHG -0.866
  183. gendstat: Mbuti.DG China_YR_MN -1.983
  184. gendstat: Mbuti.DG Turkey_Boncuklu_N -0.680
  185. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG -1.221
  186. gendstat: Mbuti.DG WSHG -0.207
  187. gendstat: Mbuti.DG Turkey_N -1.413
  188. gendstat: Mbuti.DG PPN -0.893
  189. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -2.031
  190. gendstat: Mbuti.DG Russia_MLBA_Sintashta -1.217
  191. gendstat: Mbuti.DG Iran_GanjDareh_N -0.016
  192. gendstat: Mbuti.DG ONG.SG 0.279
  193. gendstat: CHG EHG -1.490
  194. gendstat: CHG China_YR_MN -2.222
  195. gendstat: CHG Turkey_Boncuklu_N -1.440
  196. gendstat: CHG Russia_Shamanka_Eneolithic.SG -1.710
  197. gendstat: CHG WSHG -0.869
  198. gendstat: CHG Turkey_N -2.076
  199. gendstat: CHG PPN -1.448
  200. gendstat: CHG Serbia_IronGates_Mesolithic -2.686
  201. gendstat: CHG Russia_MLBA_Sintashta -1.967
  202. gendstat: CHG Iran_GanjDareh_N -0.839
  203. gendstat: CHG ONG.SG -0.439
  204. gendstat: EHG China_YR_MN -0.935
  205. gendstat: EHG Turkey_Boncuklu_N 0.235
  206. gendstat: EHG Russia_Shamanka_Eneolithic.SG -0.142
  207. gendstat: EHG WSHG 0.737
  208. gendstat: EHG Turkey_N -0.319
  209. gendstat: EHG PPN -0.053
  210. gendstat: EHG Serbia_IronGates_Mesolithic -1.253
  211. gendstat: EHG Russia_MLBA_Sintashta -0.140
  212. gendstat: EHG Iran_GanjDareh_N 0.886
  213. gendstat: EHG ONG.SG 1.026
  214. gendstat: China_YR_MN Turkey_Boncuklu_N 1.170
  215. gendstat: China_YR_MN Russia_Shamanka_Eneolithic.SG 1.312
  216. gendstat: China_YR_MN WSHG 1.503
  217. gendstat: China_YR_MN Turkey_N 0.809
  218. gendstat: China_YR_MN PPN 0.850
  219. gendstat: China_YR_MN Serbia_IronGates_Mesolithic 0.061
  220. gendstat: China_YR_MN Russia_MLBA_Sintashta 1.028
  221. gendstat: China_YR_MN Iran_GanjDareh_N 1.805
  222. gendstat: China_YR_MN ONG.SG 2.441
  223. gendstat: Turkey_Boncuklu_N Russia_Shamanka_Eneolithic.SG -0.395
  224. gendstat: Turkey_Boncuklu_N WSHG 0.424
  225. gendstat: Turkey_Boncuklu_N Turkey_N -0.816
  226. gendstat: Turkey_Boncuklu_N PPN -0.296
  227. gendstat: Turkey_Boncuklu_N Serbia_IronGates_Mesolithic -1.575
  228. gendstat: Turkey_Boncuklu_N Russia_MLBA_Sintashta -0.483
  229. gendstat: Turkey_Boncuklu_N Iran_GanjDareh_N 0.703
  230. gendstat: Turkey_Boncuklu_N ONG.SG 0.870
  231. gendstat: Russia_Shamanka_Eneolithic.SG WSHG 0.813
  232. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N -0.160
  233. gendstat: Russia_Shamanka_Eneolithic.SG PPN 0.074
  234. gendstat: Russia_Shamanka_Eneolithic.SG Serbia_IronGates_Mesolithic -1.038
  235. gendstat: Russia_Shamanka_Eneolithic.SG Russia_MLBA_Sintashta 0.046
  236. gendstat: Russia_Shamanka_Eneolithic.SG Iran_GanjDareh_N 1.104
  237. gendstat: Russia_Shamanka_Eneolithic.SG ONG.SG 1.615
  238. gendstat: WSHG Turkey_N -1.020
  239. gendstat: WSHG PPN -0.593
  240. gendstat: WSHG Serbia_IronGates_Mesolithic -1.830
  241. gendstat: WSHG Russia_MLBA_Sintashta -0.930
  242. gendstat: WSHG Iran_GanjDareh_N 0.194
  243. gendstat: WSHG ONG.SG 0.430
  244. gendstat: Turkey_N PPN 0.256
  245. gendstat: Turkey_N Serbia_IronGates_Mesolithic -1.109
  246. gendstat: Turkey_N Russia_MLBA_Sintashta 0.325
  247. gendstat: Turkey_N Iran_GanjDareh_N 1.506
  248. gendstat: Turkey_N ONG.SG 1.481
  249. gendstat: PPN Serbia_IronGates_Mesolithic -0.954
  250. gendstat: PPN Russia_MLBA_Sintashta -0.050
  251. gendstat: PPN Iran_GanjDareh_N 0.937
  252. gendstat: PPN ONG.SG 1.037
  253. gendstat: Serbia_IronGates_Mesolithic Russia_MLBA_Sintashta 1.600
  254. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N 2.163
  255. gendstat: Serbia_IronGates_Mesolithic ONG.SG 2.187
  256. gendstat: Russia_MLBA_Sintashta Iran_GanjDareh_N 1.333
  257. gendstat: Russia_MLBA_Sintashta ONG.SG 1.385
  258. gendstat: Iran_GanjDareh_N ONG.SG 0.271
  259.  
  260. removing /tmp/fsx.19366
  261. ##end of qpAdm: 9.447 seconds cpu 1.040 Mbytes in use
  262.  
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