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- allsnps: YES
- ## qpAdm version: 1000
- seed: 1848567057
- read 1073741824 bytes
- read 2146675633 bytes
- packed geno read OK
- end of inpack
- left pops:
- Turkmenistan_C_Parkhai
- Iran_GanjDareh_N
- Georgia_Kotias.SG
- WSHG
- Anatolia_N
- right pops:
- Mbuti.DG
- Russia_Ust_Ishim.DG
- Russia_Kostenki14.SG
- Russia_MA1_HG.SG
- Han.DG
- ONG.SG
- Papuan.DG
- Italy_North_Villabruna_HG
- Czech_Vestonice16
- Iberia_ElMiron
- Ethiopia_4500BP_published.SG
- Karitiana.DG
- Israel_Natufian
- Georgia_Satsurblia.SG
- Russia_HG_Karelia
- 0 Turkmenistan_C_Parkhai 4
- 1 Iran_GanjDareh_N 8
- 2 Georgia_Kotias.SG 1
- 3 WSHG 3
- 4 Anatolia_N 22
- 5 Mbuti.DG 4
- 6 Russia_Ust_Ishim.DG 1
- 7 Russia_Kostenki14.SG 1
- 8 Russia_MA1_HG.SG 1
- 9 Han.DG 3
- 10 ONG.SG 6
- 11 Papuan.DG 15
- 12 Italy_North_Villabruna_HG 1
- 13 Czech_Vestonice16 1
- 14 Iberia_ElMiron 1
- 15 Ethiopia_4500BP_published.SG 1
- 16 Karitiana.DG 3
- 17 Israel_Natufian 6
- 18 Georgia_Satsurblia.SG 1
- 19 Russia_HG_Karelia 2
- jackknife block size: 0.050
- snps: 1150509 indivs: 85
- number of blocks for block jackknife: 713
- ## ncols: 1150509
- coverage: Turkmenistan_C_Parkhai 995807
- coverage: Iran_GanjDareh_N 1057358
- coverage: Georgia_Kotias.SG 1149097
- coverage: WSHG 858019
- coverage: Anatolia_N 1139031
- coverage: Mbuti.DG 1121438
- coverage: Russia_Ust_Ishim.DG 1062044
- coverage: Russia_Kostenki14.SG 1048972
- coverage: Russia_MA1_HG.SG 805960
- coverage: Han.DG 1121416
- coverage: ONG.SG 1143397
- coverage: Papuan.DG 1121459
- coverage: Italy_North_Villabruna_HG 883779
- coverage: Czech_Vestonice16 732091
- coverage: Iberia_ElMiron 626974
- coverage: Ethiopia_4500BP_published.SG 1149598
- coverage: Karitiana.DG 1121394
- coverage: Israel_Natufian 535079
- coverage: Georgia_Satsurblia.SG 801311
- coverage: Russia_HG_Karelia 1010733
- dof (jackknife): 618.828
- numsnps used: 1150509
- codimension 1
- f4info:
- f4rank: 3 dof: 11 chisq: 6.671 tail: 0.825084041 dofdiff: 13 chisqdiff: -6.671 taildiff: 1
- B:
- scale 1.000 1.000 1.000
- Russia_Ust_Ishim.DG 0.404 0.030 0.014
- Russia_Kostenki14.SG 0.561 0.609 0.195
- Russia_MA1_HG.SG 1.705 -1.071 -0.639
- Han.DG 0.842 -0.465 -0.190
- ONG.SG 0.520 -0.305 -0.104
- Papuan.DG 0.563 -0.378 -0.299
- Italy_North_Villabruna_HG 0.882 1.509 0.379
- Czech_Vestonice16 0.635 1.008 0.136
- Iberia_ElMiron 0.759 1.123 0.188
- Ethiopia_4500BP_published.SG -0.031 0.085 0.011
- Karitiana.DG 1.681 -1.103 -0.560
- Israel_Natufian -0.006 2.238 0.308
- Georgia_Satsurblia.SG -0.329 -1.001 3.564
- Russia_HG_Karelia 2.151 -0.489 -0.332
- A:
- scale 332.596 889.623 1020.997
- Iran_GanjDareh_N -0.317 -0.395 -0.347
- Georgia_Kotias.SG 0.211 -0.301 1.943
- WSHG 1.940 -0.275 -0.181
- Anatolia_N 0.301 1.918 0.269
- full rank
- f4info:
- f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 6.671 taildiff: 0.825084041
- B:
- scale 1056.365 522.824 166.001 450.386
- Russia_Ust_Ishim.DG -0.361 0.190 0.410 0.241
- Russia_Kostenki14.SG -0.612 0.415 0.548 0.947
- Russia_MA1_HG.SG -1.082 0.060 1.736 -0.432
- Han.DG -0.416 0.229 0.879 -0.069
- ONG.SG -0.422 0.110 0.539 -0.089
- Papuan.DG -0.285 -0.036 0.588 -0.161
- Italy_North_Villabruna_HG -1.695 0.445 0.782 1.882
- Czech_Vestonice16 -1.450 0.055 0.534 1.181
- Iberia_ElMiron -1.113 0.360 0.717 1.521
- Ethiopia_4500BP_published.SG 0.112 0.035 -0.017 0.114
- Karitiana.DG -0.775 0.253 1.737 -0.386
- Israel_Natufian -1.187 -0.107 -0.116 2.198
- Georgia_Satsurblia.SG -0.456 3.621 -0.355 -0.667
- Russia_HG_Karelia -1.857 0.454 2.132 0.362
- A:
- scale 2.000 2.000 2.000 2.000
- Iran_GanjDareh_N 2.000 0.000 0.000 0.000
- Georgia_Kotias.SG 0.000 2.000 0.000 0.000
- WSHG 0.000 0.000 2.000 0.000
- Anatolia_N 0.000 0.000 0.000 2.000
- best coefficients: 0.663 0.103 0.072 0.163
- Jackknife mean: 0.661756474 0.103077220 0.071959256 0.163207051
- std. errors: 0.040 0.031 0.013 0.022
- error covariance (* 1,000,000)
- 1586 -951 -193 -442
- -951 948 40 -36
- -193 40 179 -25
- -442 -36 -25 503
- summ: Turkmenistan_C_Parkhai 4 0.825084 0.662 0.103 0.072 0.163 1586 -951 -193 -442 948 ...
- 40 -36 179 -25 503
- fixed pat wt dof chisq tail prob
- 0000 0 11 6.671 0.825084 0.663 0.103 0.072 0.163
- 0001 1 12 52.195 5.72549e-07 0.850 0.078 0.073 0.000
- 0010 1 12 32.795 0.00104177 0.759 0.077 0.000 0.165
- 0100 1 12 17.963 0.116814 0.773 0.000 0.066 0.161
- 1000 1 12 184.821 0 0.000 0.616 0.116 0.268
- 0011 2 13 75.189 8.7783e-11 0.962 0.038 0.000 0.000
- 0101 2 13 58.632 9.21626e-08 0.930 0.000 0.070 0.000
- 0110 2 13 39.988 0.000138847 0.838 0.000 0.000 0.162
- 1001 2 13 252.121 0 0.000 0.889 0.111 0.000
- 1010 2 13 222.272 0 0.000 0.742 0.000 0.258
- 1100 2 13 664.184 0 0.000 0.000 0.197 0.803
- 0111 3 14 76.629 1.18796e-10 1.000 0.000 0.000 0.000
- 1011 3 14 271.151 0 0.000 1.000 0.000 0.000
- 1101 3 14 1971.885 0 0.000 0.000 1.000 0.000
- 1110 3 14 792.355 0 0.000 0.000 0.000 1.000
- best pat: 0000 0.825084 - -
- best pat: 0100 0.116814 chi(nested): 11.292 p-value for nested model: 0.000778254
- best pat: 0110 0.000138847 chi(nested): 22.025 p-value for nested model: 2.69133e-06
- best pat: 0111 1.18796e-10 chi(nested): 36.640 p-value for nested model: 1.42055e-09
- coeffs: 0.663 0.103 0.072 0.163
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Iran_GanjDareh_N Russia_Ust_Ishim.DG -0.000342 -1.235486
- details: Georgia_Kotias.SG Russia_Ust_Ishim.DG 0.000364 0.870050
- details: WSHG Russia_Ust_Ishim.DG 0.002470 6.554325
- details: Anatolia_N Russia_Ust_Ishim.DG 0.000536 1.865456
- dscore: Russia_Ust_Ishim.DG f4: 0.000075 Z: 0.312729
- details: Iran_GanjDareh_N Russia_Kostenki14.SG -0.000579 -1.954863
- details: Georgia_Kotias.SG Russia_Kostenki14.SG 0.000795 1.764634
- details: WSHG Russia_Kostenki14.SG 0.003301 8.453970
- details: Anatolia_N Russia_Kostenki14.SG 0.002103 6.657663
- dscore: Russia_Kostenki14.SG f4: 0.000278 Z: 1.083542
- details: Iran_GanjDareh_N Russia_MA1_HG.SG -0.001024 -3.490555
- details: Georgia_Kotias.SG Russia_MA1_HG.SG 0.000115 0.269713
- details: WSHG Russia_MA1_HG.SG 0.010456 25.382512
- details: Anatolia_N Russia_MA1_HG.SG -0.000959 -3.240163
- dscore: Russia_MA1_HG.SG f4: -0.000072 Z: -0.284543
- details: Iran_GanjDareh_N Han.DG -0.000394 -1.581376
- details: Georgia_Kotias.SG Han.DG 0.000437 1.239385
- details: WSHG Han.DG 0.005293 15.646092
- details: Anatolia_N Han.DG -0.000153 -0.645095
- dscore: Han.DG f4: 0.000139 Z: 0.648329
- details: Iran_GanjDareh_N ONG.SG -0.000399 -1.585272
- details: Georgia_Kotias.SG ONG.SG 0.000211 0.601513
- details: WSHG ONG.SG 0.003249 9.912964
- details: Anatolia_N ONG.SG -0.000198 -0.852303
- dscore: ONG.SG f4: -0.000042 Z: -0.195236
- details: Iran_GanjDareh_N Papuan.DG -0.000270 -1.095384
- details: Georgia_Kotias.SG Papuan.DG -0.000068 -0.189493
- details: WSHG Papuan.DG 0.003541 10.238629
- details: Anatolia_N Papuan.DG -0.000358 -1.555144
- dscore: Papuan.DG f4: 0.000010 Z: 0.049486
- details: Iran_GanjDareh_N Italy_North_Villabruna_HG -0.001604 -5.306228
- details: Georgia_Kotias.SG Italy_North_Villabruna_HG 0.000851 1.932668
- details: WSHG Italy_North_Villabruna_HG 0.004708 11.237131
- details: Anatolia_N Italy_North_Villabruna_HG 0.004178 14.100013
- dscore: Italy_North_Villabruna_HG f4: 0.000043 Z: 0.171409
- details: Iran_GanjDareh_N Czech_Vestonice16 -0.001373 -4.835488
- details: Georgia_Kotias.SG Czech_Vestonice16 0.000106 0.251238
- details: WSHG Czech_Vestonice16 0.003218 8.559161
- details: Anatolia_N Czech_Vestonice16 0.002622 8.559317
- dscore: Czech_Vestonice16 f4: -0.000240 Z: -0.970651
- details: Iran_GanjDareh_N Iberia_ElMiron -0.001054 -4.005518
- details: Georgia_Kotias.SG Iberia_ElMiron 0.000688 1.851745
- details: WSHG Iberia_ElMiron 0.004317 11.511038
- details: Anatolia_N Iberia_ElMiron 0.003377 12.393569
- dscore: Iberia_ElMiron f4: 0.000233 Z: 1.026592
- details: Iran_GanjDareh_N Ethiopia_4500BP_published.SG 0.000106 0.503885
- details: Georgia_Kotias.SG Ethiopia_4500BP_published.SG 0.000067 0.217539
- details: WSHG Ethiopia_4500BP_published.SG -0.000102 -0.409713
- details: Anatolia_N Ethiopia_4500BP_published.SG 0.000253 1.239644
- dscore: Ethiopia_4500BP_published.SG f4: 0.000111 Z: 0.613509
- details: Iran_GanjDareh_N Karitiana.DG -0.000733 -2.628337
- details: Georgia_Kotias.SG Karitiana.DG 0.000484 1.222854
- details: WSHG Karitiana.DG 0.010462 27.361859
- details: Anatolia_N Karitiana.DG -0.000858 -3.132459
- dscore: Karitiana.DG f4: 0.000176 Z: 0.733793
- details: Iran_GanjDareh_N Israel_Natufian -0.001124 -5.295235
- details: Georgia_Kotias.SG Israel_Natufian -0.000205 -0.677149
- details: WSHG Israel_Natufian -0.000700 -2.515948
- details: Anatolia_N Israel_Natufian 0.004881 19.433842
- dscore: Israel_Natufian f4: -0.000021 Z: -0.113586
- details: Iran_GanjDareh_N Georgia_Satsurblia.SG -0.000431 -1.550330
- details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.006925 15.120983
- details: WSHG Georgia_Satsurblia.SG -0.002138 -5.776504
- details: Anatolia_N Georgia_Satsurblia.SG -0.001481 -4.960540
- dscore: Georgia_Satsurblia.SG f4: 0.000030 Z: 0.123664
- details: Iran_GanjDareh_N Russia_HG_Karelia -0.001758 -5.742022
- details: Georgia_Kotias.SG Russia_HG_Karelia 0.000868 1.852911
- details: WSHG Russia_HG_Karelia 0.012843 31.384560
- details: Anatolia_N Russia_HG_Karelia 0.000803 2.669155
- dscore: Russia_HG_Karelia f4: -0.000022 Z: -0.084441
- gendstat: Mbuti.DG Russia_Ust_Ishim.DG 0.313
- gendstat: Mbuti.DG Russia_Kostenki14.SG 1.084
- gendstat: Mbuti.DG Russia_MA1_HG.SG -0.285
- gendstat: Mbuti.DG Han.DG 0.648
- gendstat: Mbuti.DG ONG.SG -0.195
- gendstat: Mbuti.DG Papuan.DG 0.049
- gendstat: Mbuti.DG Italy_North_Villabruna_HG 0.171
- gendstat: Mbuti.DG Czech_Vestonice16 -0.971
- gendstat: Mbuti.DG Iberia_ElMiron 1.027
- gendstat: Mbuti.DG Ethiopia_4500BP_published.SG 0.614
- gendstat: Mbuti.DG Karitiana.DG 0.734
- gendstat: Mbuti.DG Israel_Natufian -0.114
- gendstat: Mbuti.DG Georgia_Satsurblia.SG 0.124
- gendstat: Mbuti.DG Russia_HG_Karelia -0.084
- gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 0.715
- gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG -0.503
- gendstat: Russia_Ust_Ishim.DG Han.DG 0.250
- gendstat: Russia_Ust_Ishim.DG ONG.SG -0.477
- gendstat: Russia_Ust_Ishim.DG Papuan.DG -0.258
- gendstat: Russia_Ust_Ishim.DG Italy_North_Villabruna_HG -0.110
- gendstat: Russia_Ust_Ishim.DG Czech_Vestonice16 -1.082
- gendstat: Russia_Ust_Ishim.DG Iberia_ElMiron 0.585
- gendstat: Russia_Ust_Ishim.DG Ethiopia_4500BP_published.SG 0.132
- gendstat: Russia_Ust_Ishim.DG Karitiana.DG 0.367
- gendstat: Russia_Ust_Ishim.DG Israel_Natufian -0.369
- gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG -0.157
- gendstat: Russia_Ust_Ishim.DG Russia_HG_Karelia -0.329
- gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -1.188
- gendstat: Russia_Kostenki14.SG Han.DG -0.526
- gendstat: Russia_Kostenki14.SG ONG.SG -1.204
- gendstat: Russia_Kostenki14.SG Papuan.DG -1.046
- gendstat: Russia_Kostenki14.SG Italy_North_Villabruna_HG -0.787
- gendstat: Russia_Kostenki14.SG Czech_Vestonice16 -1.811
- gendstat: Russia_Kostenki14.SG Iberia_ElMiron -0.168
- gendstat: Russia_Kostenki14.SG Ethiopia_4500BP_published.SG -0.568
- gendstat: Russia_Kostenki14.SG Karitiana.DG -0.367
- gendstat: Russia_Kostenki14.SG Israel_Natufian -1.108
- gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG -0.830
- gendstat: Russia_Kostenki14.SG Russia_HG_Karelia -1.014
- gendstat: Russia_MA1_HG.SG Han.DG 0.826
- gendstat: Russia_MA1_HG.SG ONG.SG 0.115
- gendstat: Russia_MA1_HG.SG Papuan.DG 0.316
- gendstat: Russia_MA1_HG.SG Italy_North_Villabruna_HG 0.390
- gendstat: Russia_MA1_HG.SG Czech_Vestonice16 -0.565
- gendstat: Russia_MA1_HG.SG Iberia_ElMiron 1.067
- gendstat: Russia_MA1_HG.SG Ethiopia_4500BP_published.SG 0.642
- gendstat: Russia_MA1_HG.SG Karitiana.DG 0.953
- gendstat: Russia_MA1_HG.SG Israel_Natufian 0.191
- gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 0.355
- gendstat: Russia_MA1_HG.SG Russia_HG_Karelia 0.186
- gendstat: Han.DG ONG.SG -0.924
- gendstat: Han.DG Papuan.DG -0.653
- gendstat: Han.DG Italy_North_Villabruna_HG -0.369
- gendstat: Han.DG Czech_Vestonice16 -1.420
- gendstat: Han.DG Iberia_ElMiron 0.367
- gendstat: Han.DG Ethiopia_4500BP_published.SG -0.112
- gendstat: Han.DG Karitiana.DG 0.186
- gendstat: Han.DG Israel_Natufian -0.672
- gendstat: Han.DG Georgia_Satsurblia.SG -0.412
- gendstat: Han.DG Russia_HG_Karelia -0.636
- gendstat: ONG.SG Papuan.DG 0.268
- gendstat: ONG.SG Italy_North_Villabruna_HG 0.317
- gendstat: ONG.SG Czech_Vestonice16 -0.740
- gendstat: ONG.SG Iberia_ElMiron 1.095
- gendstat: ONG.SG Ethiopia_4500BP_published.SG 0.629
- gendstat: ONG.SG Karitiana.DG 0.930
- gendstat: ONG.SG Israel_Natufian 0.087
- gendstat: ONG.SG Georgia_Satsurblia.SG 0.276
- gendstat: ONG.SG Russia_HG_Karelia 0.075
- gendstat: Papuan.DG Italy_North_Villabruna_HG 0.124
- gendstat: Papuan.DG Czech_Vestonice16 -0.954
- gendstat: Papuan.DG Iberia_ElMiron 0.898
- gendstat: Papuan.DG Ethiopia_4500BP_published.SG 0.417
- gendstat: Papuan.DG Karitiana.DG 0.723
- gendstat: Papuan.DG Israel_Natufian -0.132
- gendstat: Papuan.DG Georgia_Satsurblia.SG 0.074
- gendstat: Papuan.DG Russia_HG_Karelia -0.126
- gendstat: Italy_North_Villabruna_HG Czech_Vestonice16 -1.008
- gendstat: Italy_North_Villabruna_HG Iberia_ElMiron 0.718
- gendstat: Italy_North_Villabruna_HG Ethiopia_4500BP_published.SG 0.235
- gendstat: Italy_North_Villabruna_HG Karitiana.DG 0.484
- gendstat: Italy_North_Villabruna_HG Israel_Natufian -0.242
- gendstat: Italy_North_Villabruna_HG Georgia_Satsurblia.SG -0.043
- gendstat: Italy_North_Villabruna_HG Russia_HG_Karelia -0.237
- gendstat: Czech_Vestonice16 Iberia_ElMiron 1.712
- gendstat: Czech_Vestonice16 Ethiopia_4500BP_published.SG 1.237
- gendstat: Czech_Vestonice16 Karitiana.DG 1.465
- gendstat: Czech_Vestonice16 Israel_Natufian 0.814
- gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG 0.871
- gendstat: Czech_Vestonice16 Russia_HG_Karelia 0.736
- gendstat: Iberia_ElMiron Ethiopia_4500BP_published.SG -0.460
- gendstat: Iberia_ElMiron Karitiana.DG -0.216
- gendstat: Iberia_ElMiron Israel_Natufian -1.020
- gendstat: Iberia_ElMiron Georgia_Satsurblia.SG -0.731
- gendstat: Iberia_ElMiron Russia_HG_Karelia -0.895
- gendstat: Ethiopia_4500BP_published.SG Karitiana.DG 0.241
- gendstat: Ethiopia_4500BP_published.SG Israel_Natufian -0.558
- gendstat: Ethiopia_4500BP_published.SG Georgia_Satsurblia.SG -0.285
- gendstat: Ethiopia_4500BP_published.SG Russia_HG_Karelia -0.449
- gendstat: Karitiana.DG Israel_Natufian -0.730
- gendstat: Karitiana.DG Georgia_Satsurblia.SG -0.513
- gendstat: Karitiana.DG Russia_HG_Karelia -0.755
- gendstat: Israel_Natufian Georgia_Satsurblia.SG 0.191
- gendstat: Israel_Natufian Russia_HG_Karelia -0.004
- gendstat: Georgia_Satsurblia.SG Russia_HG_Karelia -0.173
- ##end of qpAdm: 393.309 seconds cpu 1534.497 Mbytes in use
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