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- rank=651 L00: Traceback (most recent call last):
- rank=651 L01: File "/home/lv70811/susit5/.local/lib/python2.7/site-packages/gpaw/__init__.py", line 196, in main
- rank=651 L02: runpy.run_path(gpaw_args.script, run_name='__main__')
- rank=651 L03: File "/opt/sw/x86_64/glibc-2.17/ivybridge-ep/python/2.7.11/intel/16.0.1/lib/python2.7/runpy.py", line 240, in run_path
- rank=651 L04: return _run_module_code(code, init_globals, run_name, path_name)
- rank=651 L05: File "/opt/sw/x86_64/glibc-2.17/ivybridge-ep/python/2.7.11/intel/16.0.1/lib/python2.7/runpy.py", line 82, in _run_module_code
- rank=651 L06: mod_name, mod_fname, mod_loader, pkg_name)
- rank=651 L07: File "/opt/sw/x86_64/glibc-2.17/ivybridge-ep/python/2.7.11/intel/16.0.1/lib/python2.7/runpy.py", line 72, in _run_code
- rank=651 L08: exec code in run_globals
- rank=651 L09: File "xps_script.py", line 110, in <module>
- rank=651 L10: e4 = atoms.get_potential_energy() + calc.get_reference_energy()
- rank=651 L11: File "/home/lv70811/susit5/.local/lib/python2.7/site-packages/ase-3.15.1b1-py2.7.egg/ase/atoms.py", line 685, in get_potential_energy
- rank=651 L12: energy = self._calc.get_potential_energy(self)
- rank=651 L13: File "/home/lv70811/susit5/.local/lib/python2.7/site-packages/ase-3.15.1b1-py2.7.egg/ase/calculators/calculator.py", line 441, in get_potential_energy
- rank=651 L14: energy = self.get_property('energy', atoms)
- rank=651 L15: File "/home/lv70811/susit5/.local/lib/python2.7/site-packages/ase-3.15.1b1-py2.7.egg/ase/calculators/calculator.py", line 486, in get_property
- rank=651 L16: self.calculate(atoms, [name], system_changes)
- rank=651 L17: File "/home/lv70811/susit5/.local/lib/python2.7/site-packages/gpaw/calculator.py", line 292, in calculate
- rank=651 L18: self.log, self.call_observers)
- rank=651 L19: File "/home/lv70811/susit5/.local/lib/python2.7/site-packages/gpaw/scf.py", line 61, in run
- rank=651 L20: wfs.eigensolver.iterate(ham, wfs)
- rank=651 L21: File "/home/lv70811/susit5/.local/lib/python2.7/site-packages/gpaw/eigensolvers/eigensolver.py", line 84, in iterate
- rank=651 L22: wfs.orthonormalize(kpt)
- rank=651 L23: File "/home/lv70811/susit5/.local/lib/python2.7/site-packages/ase-3.15.1b1-py2.7.egg/ase/utils/timing.py", line 173, in new_method
- rank=651 L24: x = method(slf, *args, **kwargs)
- rank=651 L25: File "/home/lv70811/susit5/.local/lib/python2.7/site-packages/gpaw/wavefunctions/fdpw.py", line 454, in orthonormalize
- rank=651 L26: mmm(1.0, P, 'N', P2, 'C', 1.0, S, symmetric=True)
- rank=651 L27: File "/home/lv70811/susit5/.local/lib/python2.7/site-packages/gpaw/matrix.py", line 36, in matrix_matrix_multiply
- rank=651 L28: symmetric)
- rank=651 L29: File "/home/lv70811/susit5/.local/lib/python2.7/site-packages/gpaw/matrix.py", line 159, in multiply
- rank=651 L30: dist.multiply(alpha, self, opa, b, opb, beta, out, symmetric)
- rank=651 L31: File "/home/lv70811/susit5/.local/lib/python2.7/site-packages/gpaw/matrix.py", line 350, in multiply
- rank=651 L32: blas.r2k(0.5 * alpha, a.array, b.array, beta, c.array)
- rank=651 L33: File "/home/lv70811/susit5/.local/lib/python2.7/site-packages/gpaw/utilities/blas.py", line 257, in r2k
- rank=651 L34: assert beta == 0.0 or np.isfinite(np.tril(c)).all()
- rank=651 L35: AssertionError
- GPAW CLEANUP (node 651): <type 'exceptions.AssertionError'> occurred. Calling MPI_Abort!
- application called MPI_Abort(MPI_COMM_WORLD, 42) - process 704
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