API tools faq
paste
Advertisement
Guest User

Untitled

a guest
May 19th, 2019
94
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 8.18 KB | None | 0 0
raw download clone embed print report
  1. == 2019-05-09 15:28:20,438 easyblock.py:279 INFO This is EasyBuild 3.9.1.dev0 (framework: 3.9.1.dev0, easyblocks: 3.9.1.dev0) on host nic72.
  2. == 2019-05-09 15:28:20,438 easyblock.py:285 INFO This is easyblock Tarball from module easybuild.easyblocks.generic.tarball (/dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/easybuild-easyblocks/easybuild/easyblocks/generic/tarball.py)
  3. == 2019-05-09 15:28:20,438 easyblock.py:840 INFO Build dir set to /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/metaWRAP/1.2/foss-2018b-Python-2.7.15
  4. == 2019-05-09 15:28:20,439 easyblock.py:900 INFO Software install dir set to /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/software/metaWRAP/1.2-foss-2018b-Python-2.7.15
  5. == 2019-05-09 15:28:20,439 easyblock.py:905 INFO Module install dir set to /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/modules/all
  6. == 2019-05-09 15:28:20,439 easyblock.py:264 INFO Init completed for application name metaWRAP version 1.2
  7. == 2019-05-09 15:28:20,439 easyblock.py:2999 INFO Obtained application instance of for metaWRAP (easyblock: Tarball)
  8. == 2019-05-09 15:28:20,440 one.py:146 INFO Skipping reformatting value for parameter 'toolchain'
  9. == 2019-05-09 15:28:20,441 filetools.py:1207 INFO Creating directory /dev/shm/vsc10042/2090320/eb-qF5pjw/reprod_20190509152820_1961 (parents: True, set_gid: False, sticky: False)
  10. == 2019-05-09 15:28:20,441 easyblock.py:3169 INFO Dumped easyconfig instance to /dev/shm/vsc10042/2090320/eb-qF5pjw/reprod_20190509152820_1961/metaWRAP-1.2-foss-2018b-Python-2.7.15.eb
  11. == 2019-05-09 15:28:20,441 filetools.py:1207 INFO Creating directory /dev/shm/vsc10042/2090320/eb-qF5pjw/reprod_20190509152820_1961/easyblocks (parents: True, set_gid: False, sticky: False)
  12. == 2019-05-09 15:28:20,442 filetools.py:1677 INFO /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/easybuild-easyblocks/easybuild/easyblocks/generic/tarball.py copied to /dev/shm/vsc10042/2090320/eb-qF5pjw/reprod_20190509152820_1961/easyblocks/tarball.py
  13. == 2019-05-09 15:28:20,442 easyblock.py:3184 INFO Dumped easyblock tarball.py required for reproduction to /dev/shm/vsc10042/2090320/eb-qF5pjw/reprod_20190509152820_1961/easyblocks
  14. == 2019-05-09 15:28:20,442 easyblock.py:1599 INFO Number of iterations to perform for central part of installation procedure: 1
  15. == 2019-05-09 15:28:20,442 build_log.py:252 INFO building and installing metaWRAP/1.2-foss-2018b-Python-2.7.15...
  16. == 2019-05-09 15:28:20,442 build_log.py:252 INFO fetching files...
  17. == 2019-05-09 15:28:20,442 easyblock.py:2779 INFO Starting fetch step
  18. == 2019-05-09 15:28:20,443 easyblock.py:2785 INFO Running method fetch_step part of step fetch
  19. == 2019-05-09 15:28:20,443 easyblock.py:1680 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
  20. == 2019-05-09 15:28:20,443 filetools.py:394 INFO Command eb found at /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/easybuild-framework/eb
  21. == 2019-05-09 15:28:20,459 easyblock.py:668 INFO Found file metaWRAP-1.2.tar.gz at /apps/gent/source/m/metaWRAP/metaWRAP-1.2.tar.gz
  22. == 2019-05-09 15:28:20,464 easyblock.py:393 INFO Added sources: [{'path': '/apps/gent/source/m/metaWRAP/metaWRAP-1.2.tar.gz', 'cmd': None, 'finalpath': '/dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/metaWRAP/1.2/foss-2018b-Python-2.7.15', 'name': 'metaWRAP-1.2.tar.gz', 'checksum': '31688b02bf74871973569ce685985687277a9466078a3786b64f5504917ebc17'}]
  23. == 2019-05-09 15:28:20,464 easyblock.py:1721 INFO no patches provided
  24. == 2019-05-09 15:28:20,544 easyblock.py:1731 INFO md5 checksum for /apps/gent/source/m/metaWRAP/metaWRAP-1.2.tar.gz: a27f3968d7534b6989eacf391771942b
  25. == 2019-05-09 15:28:20,557 easyblock.py:1731 INFO sha256 checksum for /apps/gent/source/m/metaWRAP/metaWRAP-1.2.tar.gz: 31688b02bf74871973569ce685985687277a9466078a3786b64f5504917ebc17
  26. == 2019-05-09 15:28:20,558 easyblock.py:1766 INFO Checking dirs that need to be created: ['/dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/software/metaWRAP/1.2-foss-2018b-Python-2.7.15', '/dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/modules/all/metaWRAP', '/dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/modules/bio/metaWRAP']
  27. == 2019-05-09 15:28:20,558 filetools.py:1207 INFO Creating directory /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/software/metaWRAP/1.2-foss-2018b-Python-2.7.15 (parents: True, set_gid: False, sticky: False)
  28. == 2019-05-09 15:28:20,558 filetools.py:1207 INFO Creating directory /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/modules/all/metaWRAP (parents: True, set_gid: False, sticky: False)
  29. == 2019-05-09 15:28:20,558 filetools.py:1207 INFO Creating directory /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/modules/bio/metaWRAP (parents: True, set_gid: False, sticky: False)
  30. == 2019-05-09 15:28:20,558 build_log.py:252 INFO creating build dir, resetting environment...
  31. == 2019-05-09 15:28:20,559 easyblock.py:2779 INFO Starting ready step
  32. == 2019-05-09 15:28:20,559 easyblock.py:2785 INFO Running method check_readiness_step part of step ready
  33. == 2019-05-09 15:28:20,560 easyblock.py:1618 INFO Setting parallelism: 4
  34. == 2019-05-09 15:28:20,617 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '')
  35. == 2019-05-09 15:28:20,617 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
  36. == 2019-05-09 15:28:20,618 easyblock.py:2785 INFO Running method make_builddir part of step ready
  37. == 2019-05-09 15:28:20,618 filetools.py:1207 INFO Creating directory /dev/shm/vsc10042/2090320/eb_sandbox_20190509_14-56-22_40FHR/metaWRAP/1.2/foss-2018b-Python-2.7.15 (parents: True, set_gid: False, sticky: False)
  38. == 2019-05-09 15:28:20,618 easyblock.py:2785 INFO Running method reset_env part of step ready
  39. == 2019-05-09 15:28:20,618 easyblock.py:2785 INFO Running method handle_iterate_opts part of step ready
  40. == 2019-05-09 15:28:20,619 build_log.py:252 INFO unpacking...
  41. == 2019-05-09 15:28:20,619 easyblock.py:2779 INFO Starting source step
  42. == 2019-05-09 15:28:20,619 easyblock.py:2785 INFO Running method checksum_step part of step source
  43. == 2019-05-09 15:28:20,634 easyblock.py:1782 INFO Checksum verification for /apps/gent/source/m/metaWRAP/metaWRAP-1.2.tar.gz using 31688b02bf74871973569ce685985687277a9466078a3786b64f5504917ebc17 passed.
  44. == 2019-05-09 15:28:20,634 easyblock.py:2785 INFO Running method extract_step part of step source
  45. == 2019-05-09 15:28:20,634 easyblock.py:1850 INFO Unpacking source metaWRAP-1.2.tar.gz
  46. == 2019-05-09 15:28:20,634 run.py:141 INFO Auto-enabling streaming output of 'tar xzf /apps/gent/source/m/metaWRAP/metaWRAP-1.2.tar.gz' command because logging to stdout is enabled
  47. == 2019-05-09 15:28:20,635 run.py:192 INFO running cmd: tar xzf /apps/gent/source/m/metaWRAP/metaWRAP-1.2.tar.gz
  48. == 2019-05-09 15:28:20,685 build_log.py:252 INFO patching...
  49. == 2019-05-09 15:28:20,685 easyblock.py:2779 INFO Starting patch step
  50. == 2019-05-09 15:28:20,687 easyblock.py:2785 INFO Running method patch_step part of step patch
  51. == 2019-05-09 15:28:20,687 build_log.py:252 INFO preparing...
  52. == 2019-05-09 15:28:20,687 easyblock.py:2779 INFO Starting prepare step
  53. == 2019-05-09 15:28:20,687 easyblock.py:2785 INFO Running method prepare_step part of step prepare
  54. == 2019-05-09 15:28:21,494 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '')
  55. == 2019-05-09 15:28:21,494 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
  56. == 2019-05-09 15:28:24,722 build_log.py:163 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Missing modules for dependencies (use --robot?): Perl/5.28.0-GCCcore-7.3.0, CONCOCT/1.0.0-foss-2018b-Python-2.7.15, Kraken/1.1-foss-2018b-Perl-5.28.0, Trim_Galore/0.6.0-foss-2018b-Python-2.7.15, prokka/1.13.4-foss-2018b (at easybuild/tools/toolchain/toolchain.py:420 in _check_dependencies)
  57. == 2019-05-09 15:28:24,723 easyblock.py:3029 WARNING build failed (first 300 chars): Missing modules for dependencies (use --robot?): Perl/5.28.0-GCCcore-7.3.0, CONCOCT/1.0.0-foss-2018b-Python-2.7.15, Kraken/1.1-foss-2018b-Perl-5.28.0, Trim_Galore/0.6.0-foss-2018b-Python-2.7.15, prokka/1.13.4-foss-2018b
  58. == 2019-05-09 15:28:24,723 easyblock.py:294 INFO Closing log for application name metaWRAP version 1.2
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement
Public Pastes
Advertisement
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!