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misnomer001

steppe_en tepe anau

misnomer001
Apr 27th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1613969555
  4. read 1073741824 bytes
  5. read 2146675633 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Russia_Steppe_Eneolithic
  11. Russia_HG_Karelia
  12. Turkmenistan_C_TepeAnau
  13. Georgia_Kotias.SG
  14.  
  15. right pops:
  16. Cameroon_SMA.DG
  17. Czech_Vestonice16
  18. Russia_Kostenki14
  19. Italy_North_Villabruna_HG
  20. Russia_MA1_HG.SG
  21. Iberia_ElMiron
  22. Morocco_Iberomaurusian
  23. Anatolia_Epipaleolithic
  24. Iran_GanjDareh_N
  25. Georgia_Satsurblia.SG
  26. Boisman_MN
  27. ONG.SG
  28.  
  29. 0 Russia_Steppe_Eneolithic 3
  30. 1 Russia_HG_Karelia 2
  31. 2 Turkmenistan_C_TepeAnau 3
  32. 3 Georgia_Kotias.SG 1
  33. 4 Cameroon_SMA.DG 1
  34. 5 Czech_Vestonice16 1
  35. 6 Russia_Kostenki14 1
  36. 7 Italy_North_Villabruna_HG 1
  37. 8 Russia_MA1_HG.SG 1
  38. 9 Iberia_ElMiron 1
  39. 10 Morocco_Iberomaurusian 6
  40. 11 Anatolia_Epipaleolithic 1
  41. 12 Iran_GanjDareh_N 8
  42. 13 Georgia_Satsurblia.SG 1
  43. 14 Boisman_MN 12
  44. 15 ONG.SG 6
  45. jackknife block size: 0.050
  46. snps: 1150508 indivs: 49
  47. number of blocks for block jackknife: 713
  48. ## ncols: 1150508
  49. coverage: Russia_Steppe_Eneolithic 1008226
  50. coverage: Russia_HG_Karelia 1010733
  51. coverage: Turkmenistan_C_TepeAnau 930778
  52. coverage: Georgia_Kotias.SG 1149097
  53. coverage: Cameroon_SMA.DG 1140138
  54. coverage: Czech_Vestonice16 732091
  55. coverage: Russia_Kostenki14 1068326
  56. coverage: Italy_North_Villabruna_HG 883779
  57. coverage: Russia_MA1_HG.SG 805960
  58. coverage: Iberia_ElMiron 626974
  59. coverage: Morocco_Iberomaurusian 1101342
  60. coverage: Anatolia_Epipaleolithic 848431
  61. coverage: Iran_GanjDareh_N 1057358
  62. coverage: Georgia_Satsurblia.SG 801311
  63. coverage: Boisman_MN 1031750
  64. coverage: ONG.SG 1143397
  65. dof (jackknife): 618.183
  66. numsnps used: 1150508
  67. codimension 1
  68. f4info:
  69. f4rank: 2 dof: 9 chisq: 13.056 tail: 0.16009626 dofdiff: 11 chisqdiff: -13.056 taildiff: 1
  70. B:
  71. scale 1.000 1.000
  72. Czech_Vestonice16 0.914 0.182
  73. Russia_Kostenki14 0.864 0.205
  74. Italy_North_Villabruna_HG 1.678 0.757
  75. Russia_MA1_HG.SG 1.693 0.011
  76. Iberia_ElMiron 1.006 0.418
  77. Morocco_Iberomaurusian 0.187 0.241
  78. Anatolia_Epipaleolithic 0.361 0.625
  79. Iran_GanjDareh_N -0.946 -1.154
  80. Georgia_Satsurblia.SG -1.061 2.896
  81. Boisman_MN 0.622 -0.098
  82. ONG.SG 0.384 0.012
  83. A:
  84. scale 421.374 1165.227
  85. Russia_HG_Karelia 1.038 0.059
  86. Turkmenistan_C_TepeAnau -0.896 -1.177
  87. Georgia_Kotias.SG -1.058 1.270
  88.  
  89.  
  90. full rank
  91. f4info:
  92. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 13.056 taildiff: 0.16009626
  93. B:
  94. scale 437.941 391.308 347.932
  95. Czech_Vestonice16 1.002 -0.850 -0.747
  96. Russia_Kostenki14 0.645 -0.930 -0.857
  97. Italy_North_Villabruna_HG 1.625 -1.816 -1.327
  98. Russia_MA1_HG.SG 1.465 -1.617 -1.709
  99. Iberia_ElMiron 0.958 -1.081 -0.842
  100. Morocco_Iberomaurusian 0.085 -0.291 -0.150
  101. Anatolia_Epipaleolithic 0.094 -0.707 -0.301
  102. Iran_GanjDareh_N -1.319 1.095 0.194
  103. Georgia_Satsurblia.SG -1.265 -0.360 1.904
  104. Boisman_MN 0.631 -0.518 -0.614
  105. ONG.SG 0.350 -0.387 -0.406
  106. A:
  107. scale 1.732 1.732 1.732
  108. Russia_HG_Karelia 1.732 0.000 0.000
  109. Turkmenistan_C_TepeAnau 0.000 1.732 0.000
  110. Georgia_Kotias.SG 0.000 0.000 1.732
  111.  
  112.  
  113. best coefficients: 0.483 0.280 0.237
  114. Jackknife mean: 0.483312893 0.279901688 0.236785418
  115. std. errors: 0.019 0.032 0.031
  116.  
  117. error covariance (* 1,000,000)
  118. 345 -221 -124
  119. -221 1048 -828
  120. -124 -828 952
  121.  
  122.  
  123. summ: Russia_Steppe_Eneolithic 3 0.160096 0.483 0.280 0.237 345 -221 -124 1048 -828 ...
  124. 952
  125.  
  126. fixed pat wt dof chisq tail prob
  127. 000 0 9 13.056 0.160096 0.483 0.280 0.237
  128. 001 1 10 73.903 7.77515e-12 0.512 0.488 0.000
  129. 010 1 10 69.806 4.83379e-11 0.525 0.000 0.475
  130. 100 1 10 317.098 0 0.000 -1.441 2.441 infeasible
  131. 011 2 11 435.383 0 1.000 0.000 0.000
  132. 101 2 11 616.009 0 0.000 1.000 0.000
  133. 110 2 11 377.714 0 0.000 0.000 1.000
  134. best pat: 000 0.160096 - -
  135. best pat: 010 4.83379e-11 chi(nested): 56.750 p-value for nested model: 4.94929e-14
  136. best pat: 110 3.2701e-74 chi(nested): 307.909 p-value for nested model: 6.23506e-69
  137.  
  138. coeffs: 0.483 0.280 0.237
  139.  
  140. ## dscore:: f_4(Base, Fit, Rbase, right2)
  141. ## genstat:: f_4(Base, Fit, right1, right2)
  142.  
  143. details: Russia_HG_Karelia Czech_Vestonice16 0.002287 5.445828
  144. details: Turkmenistan_C_TepeAnau Czech_Vestonice16 -0.002172 -6.558257
  145. details: Georgia_Kotias.SG Czech_Vestonice16 -0.002148 -4.856560
  146. dscore: Czech_Vestonice16 f4: -0.000012 Z: -0.039566
  147.  
  148. details: Russia_HG_Karelia Russia_Kostenki14 0.001472 3.085564
  149. details: Turkmenistan_C_TepeAnau Russia_Kostenki14 -0.002376 -6.724991
  150. details: Georgia_Kotias.SG Russia_Kostenki14 -0.002464 -5.055528
  151. dscore: Russia_Kostenki14 f4: -0.000537 Z: -1.665746
  152.  
  153. details: Russia_HG_Karelia Italy_North_Villabruna_HG 0.003710 7.778895
  154. details: Turkmenistan_C_TepeAnau Italy_North_Villabruna_HG -0.004642 -12.555984
  155. details: Georgia_Kotias.SG Italy_North_Villabruna_HG -0.003814 -7.647368
  156. dscore: Italy_North_Villabruna_HG f4: -0.000410 Z: -1.228190
  157.  
  158. details: Russia_HG_Karelia Russia_MA1_HG.SG 0.003345 7.533115
  159. details: Turkmenistan_C_TepeAnau Russia_MA1_HG.SG -0.004131 -12.106110
  160. details: Georgia_Kotias.SG Russia_MA1_HG.SG -0.004910 -10.549353
  161. dscore: Russia_MA1_HG.SG f4: -0.000704 Z: -2.255389
  162.  
  163. details: Russia_HG_Karelia Iberia_ElMiron 0.002188 5.774926
  164. details: Turkmenistan_C_TepeAnau Iberia_ElMiron -0.002761 -8.505527
  165. details: Georgia_Kotias.SG Iberia_ElMiron -0.002419 -6.051815
  166. dscore: Iberia_ElMiron f4: -0.000289 Z: -1.073307
  167.  
  168. details: Russia_HG_Karelia Morocco_Iberomaurusian 0.000194 0.561896
  169. details: Turkmenistan_C_TepeAnau Morocco_Iberomaurusian -0.000744 -2.716223
  170. details: Georgia_Kotias.SG Morocco_Iberomaurusian -0.000432 -1.158238
  171. dscore: Morocco_Iberomaurusian f4: -0.000217 Z: -0.887341
  172.  
  173. details: Russia_HG_Karelia Anatolia_Epipaleolithic 0.000214 0.530083
  174. details: Turkmenistan_C_TepeAnau Anatolia_Epipaleolithic -0.001808 -5.223352
  175. details: Georgia_Kotias.SG Anatolia_Epipaleolithic -0.000866 -1.920645
  176. dscore: Anatolia_Epipaleolithic f4: -0.000608 Z: -2.077415
  177.  
  178. details: Russia_HG_Karelia Iran_GanjDareh_N -0.003012 -8.727635
  179. details: Turkmenistan_C_TepeAnau Iran_GanjDareh_N 0.002799 10.017869
  180. details: Georgia_Kotias.SG Iran_GanjDareh_N 0.000557 1.467525
  181. dscore: Iran_GanjDareh_N f4: -0.000540 Z: -2.193396
  182.  
  183. details: Russia_HG_Karelia Georgia_Satsurblia.SG -0.002889 -7.732878
  184. details: Turkmenistan_C_TepeAnau Georgia_Satsurblia.SG -0.000921 -2.938569
  185. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.005473 11.487325
  186. dscore: Georgia_Satsurblia.SG f4: -0.000357 Z: -1.313228
  187.  
  188. details: Russia_HG_Karelia Boisman_MN 0.001441 4.026260
  189. details: Turkmenistan_C_TepeAnau Boisman_MN -0.001325 -4.386821
  190. details: Georgia_Kotias.SG Boisman_MN -0.001764 -4.453690
  191. dscore: Boisman_MN f4: -0.000092 Z: -0.354011
  192.  
  193. details: Russia_HG_Karelia ONG.SG 0.000800 2.160938
  194. details: Turkmenistan_C_TepeAnau ONG.SG -0.000989 -3.393208
  195. details: Georgia_Kotias.SG ONG.SG -0.001167 -2.952769
  196. dscore: ONG.SG f4: -0.000167 Z: -0.645957
  197.  
  198. gendstat: Cameroon_SMA.DG Czech_Vestonice16 -0.040
  199. gendstat: Cameroon_SMA.DG Russia_Kostenki14 -1.666
  200. gendstat: Cameroon_SMA.DG Italy_North_Villabruna_HG -1.228
  201. gendstat: Cameroon_SMA.DG Russia_MA1_HG.SG -2.255
  202. gendstat: Cameroon_SMA.DG Iberia_ElMiron -1.073
  203. gendstat: Cameroon_SMA.DG Morocco_Iberomaurusian -0.887
  204. gendstat: Cameroon_SMA.DG Anatolia_Epipaleolithic -2.077
  205. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N -2.193
  206. gendstat: Cameroon_SMA.DG Georgia_Satsurblia.SG -1.313
  207. gendstat: Cameroon_SMA.DG Boisman_MN -0.354
  208. gendstat: Cameroon_SMA.DG ONG.SG -0.646
  209. gendstat: Czech_Vestonice16 Russia_Kostenki14 -1.559
  210. gendstat: Czech_Vestonice16 Italy_North_Villabruna_HG -1.111
  211. gendstat: Czech_Vestonice16 Russia_MA1_HG.SG -1.970
  212. gendstat: Czech_Vestonice16 Iberia_ElMiron -0.838
  213. gendstat: Czech_Vestonice16 Morocco_Iberomaurusian -0.664
  214. gendstat: Czech_Vestonice16 Anatolia_Epipaleolithic -1.717
  215. gendstat: Czech_Vestonice16 Iran_GanjDareh_N -1.657
  216. gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG -0.970
  217. gendstat: Czech_Vestonice16 Boisman_MN -0.259
  218. gendstat: Czech_Vestonice16 ONG.SG -0.495
  219. gendstat: Russia_Kostenki14 Italy_North_Villabruna_HG 0.346
  220. gendstat: Russia_Kostenki14 Russia_MA1_HG.SG -0.465
  221. gendstat: Russia_Kostenki14 Iberia_ElMiron 0.739
  222. gendstat: Russia_Kostenki14 Morocco_Iberomaurusian 1.000
  223. gendstat: Russia_Kostenki14 Anatolia_Epipaleolithic -0.199
  224. gendstat: Russia_Kostenki14 Iran_GanjDareh_N -0.007
  225. gendstat: Russia_Kostenki14 Georgia_Satsurblia.SG 0.518
  226. gendstat: Russia_Kostenki14 Boisman_MN 1.441
  227. gendstat: Russia_Kostenki14 ONG.SG 1.196
  228. gendstat: Italy_North_Villabruna_HG Russia_MA1_HG.SG -0.779
  229. gendstat: Italy_North_Villabruna_HG Iberia_ElMiron 0.361
  230. gendstat: Italy_North_Villabruna_HG Morocco_Iberomaurusian 0.565
  231. gendstat: Italy_North_Villabruna_HG Anatolia_Epipaleolithic -0.546
  232. gendstat: Italy_North_Villabruna_HG Iran_GanjDareh_N -0.384
  233. gendstat: Italy_North_Villabruna_HG Georgia_Satsurblia.SG 0.143
  234. gendstat: Italy_North_Villabruna_HG Boisman_MN 0.914
  235. gendstat: Italy_North_Villabruna_HG ONG.SG 0.707
  236. gendstat: Russia_MA1_HG.SG Iberia_ElMiron 1.191
  237. gendstat: Russia_MA1_HG.SG Morocco_Iberomaurusian 1.480
  238. gendstat: Russia_MA1_HG.SG Anatolia_Epipaleolithic 0.265
  239. gendstat: Russia_MA1_HG.SG Iran_GanjDareh_N 0.532
  240. gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 0.956
  241. gendstat: Russia_MA1_HG.SG Boisman_MN 1.972
  242. gendstat: Russia_MA1_HG.SG ONG.SG 1.725
  243. gendstat: Iberia_ElMiron Morocco_Iberomaurusian 0.237
  244. gendstat: Iberia_ElMiron Anatolia_Epipaleolithic -0.960
  245. gendstat: Iberia_ElMiron Iran_GanjDareh_N -0.840
  246. gendstat: Iberia_ElMiron Georgia_Satsurblia.SG -0.204
  247. gendstat: Iberia_ElMiron Boisman_MN 0.640
  248. gendstat: Iberia_ElMiron ONG.SG 0.405
  249. gendstat: Morocco_Iberomaurusian Anatolia_Epipaleolithic -1.287
  250. gendstat: Morocco_Iberomaurusian Iran_GanjDareh_N -1.244
  251. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG -0.477
  252. gendstat: Morocco_Iberomaurusian Boisman_MN 0.451
  253. gendstat: Morocco_Iberomaurusian ONG.SG 0.184
  254. gendstat: Anatolia_Epipaleolithic Iran_GanjDareh_N 0.222
  255. gendstat: Anatolia_Epipaleolithic Georgia_Satsurblia.SG 0.738
  256. gendstat: Anatolia_Epipaleolithic Boisman_MN 1.612
  257. gendstat: Anatolia_Epipaleolithic ONG.SG 1.421
  258. gendstat: Iran_GanjDareh_N Georgia_Satsurblia.SG 0.706
  259. gendstat: Iran_GanjDareh_N Boisman_MN 1.781
  260. gendstat: Iran_GanjDareh_N ONG.SG 1.499
  261. gendstat: Georgia_Satsurblia.SG Boisman_MN 0.876
  262. gendstat: Georgia_Satsurblia.SG ONG.SG 0.663
  263. gendstat: Boisman_MN ONG.SG -0.336
  264.  
  265. ##end of qpAdm: 371.211 seconds cpu 1349.874 Mbytes in use
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