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misnomer001

megiddo outlier ukr_catacomb

misnomer001
May 31st, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1827748494
  4. read 1073741824 bytes
  5. read 2147483648 bytes
  6. read 2202161218 bytes
  7. packed geno read OK
  8. end of inpack
  9.  
  10. left pops:
  11. Megiddo_MLBA_outlierfamily
  12. Megiddo_MLBA
  13. Ukraine_BA_Catacomb.SG
  14.  
  15. right pops:
  16. Cameroon_SMA.DG
  17. EEHG
  18. WSHG
  19. PPN
  20. WEHG
  21. Anatolia_N
  22. Iran_GanjDareh_N
  23. Russia_UstBelaya_Angara
  24. ONG.SG
  25. Botai
  26. Russia_MLBA_Sintashta
  27. Uzbekistan_BA_Dzharkutan1
  28.  
  29. 0 Megiddo_MLBA_outlierfamily 2
  30. 1 Megiddo_MLBA 22
  31. 2 Ukraine_BA_Catacomb.SG 1
  32. 3 Cameroon_SMA.DG 1
  33. 4 EEHG 5
  34. 5 WSHG 3
  35. 6 PPN 11
  36. 7 WEHG 33
  37. 8 Anatolia_N 22
  38. 9 Iran_GanjDareh_N 8
  39. 10 Russia_UstBelaya_Angara 8
  40. 11 ONG.SG 6
  41. 12 Botai 2
  42. 13 Russia_MLBA_Sintashta 36
  43. 14 Uzbekistan_BA_Dzharkutan1 7
  44. jackknife block size: 0.050
  45. snps: 1150507 indivs: 167
  46. number of blocks for block jackknife: 713
  47. ## ncols: 1150507
  48. coverage: Megiddo_MLBA_outlierfamily 625041
  49. coverage: Megiddo_MLBA 989505
  50. coverage: Ukraine_BA_Catacomb.SG 168783
  51. coverage: Cameroon_SMA.DG 1140138
  52. coverage: EEHG 1052093
  53. coverage: WSHG 858019
  54. coverage: PPN 847771
  55. coverage: WEHG 1140599
  56. coverage: Anatolia_N 1139031
  57. coverage: Iran_GanjDareh_N 1057358
  58. coverage: Russia_UstBelaya_Angara 1072574
  59. coverage: ONG.SG 1143397
  60. coverage: Botai 926654
  61. coverage: Russia_MLBA_Sintashta 1128449
  62. coverage: Uzbekistan_BA_Dzharkutan1 1054006
  63. dof (jackknife): 618.503
  64. numsnps used: 1150507
  65. codimension 1
  66. f4info:
  67. f4rank: 1 dof: 10 chisq: 8.456 tail: 0.584343913 dofdiff: 12 chisqdiff: -8.456 taildiff: 1
  68. B:
  69. scale 1.000
  70. EEHG 1.348
  71. WSHG 1.549
  72. PPN -1.158
  73. WEHG 1.348
  74. Anatolia_N -0.673
  75. Iran_GanjDareh_N 0.173
  76. Russia_UstBelaya_Angara 0.666
  77. ONG.SG 0.471
  78. Botai 1.232
  79. Russia_MLBA_Sintashta 0.979
  80. Uzbekistan_BA_Dzharkutan1 -0.021
  81. A:
  82. scale 1315.102
  83. Megiddo_MLBA -1.134
  84. Ukraine_BA_Catacomb.SG 0.846
  85.  
  86.  
  87. full rank
  88. f4info:
  89. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 8.456 taildiff: 0.584343913
  90. B:
  91. scale 1024.807 1623.100
  92. EEHG -1.340 1.354
  93. WSHG -1.647 1.471
  94. PPN 1.047 -1.201
  95. WEHG -1.142 1.475
  96. Anatolia_N 0.593 -0.699
  97. Iran_GanjDareh_N -0.276 0.108
  98. Russia_UstBelaya_Angara -0.842 0.537
  99. ONG.SG -0.310 0.592
  100. Botai -1.416 1.093
  101. Russia_MLBA_Sintashta -0.905 1.007
  102. Uzbekistan_BA_Dzharkutan1 -0.188 -0.191
  103. A:
  104. scale 1.414 1.414
  105. Megiddo_MLBA 1.414 0.000
  106. Ukraine_BA_Catacomb.SG 0.000 1.414
  107.  
  108.  
  109. best coefficients: 0.427 0.573
  110. Jackknife mean: 0.426696459 0.573303541
  111. std. errors: 0.031 0.031
  112.  
  113. error covariance (* 1,000,000)
  114. 986 -986
  115. -986 986
  116.  
  117.  
  118. summ: Megiddo_MLBA_outlierfamily 2 0.584344 0.427 0.573 986 -986 986
  119.  
  120. fixed pat wt dof chisq tail prob
  121. 00 0 10 8.456 0.584344 0.427 0.573
  122. 01 1 11 147.130 5.74509e-26 1.000 0.000
  123. 10 1 11 240.777 0 0.000 1.000
  124. best pat: 00 0.584344 - -
  125. best pat: 01 5.74509e-26 chi(nested): 138.674 p-value for nested model: 5.1913e-32
  126.  
  127. coeffs: 0.427 0.573
  128.  
  129. ## dscore:: f_4(Base, Fit, Rbase, right2)
  130. ## genstat:: f_4(Base, Fit, right1, right2)
  131.  
  132. details: Megiddo_MLBA EEHG -0.001307 -4.454911
  133. details: Ukraine_BA_Catacomb.SG EEHG 0.000834 5.474420
  134. dscore: EEHG f4: -0.000081 Z: -0.462004
  135.  
  136. details: Megiddo_MLBA WSHG -0.001607 -4.786635
  137. details: Ukraine_BA_Catacomb.SG WSHG 0.000906 5.180457
  138. dscore: WSHG f4: -0.000168 Z: -0.818182
  139.  
  140. details: Megiddo_MLBA PPN 0.001022 3.418417
  141. details: Ukraine_BA_Catacomb.SG PPN -0.000740 -4.270700
  142. dscore: PPN f4: 0.000013 Z: 0.066629
  143.  
  144. details: Megiddo_MLBA WEHG -0.001115 -3.904301
  145. details: Ukraine_BA_Catacomb.SG WEHG 0.000909 4.535500
  146. dscore: WEHG f4: 0.000044 Z: 0.225797
  147.  
  148. details: Megiddo_MLBA Anatolia_N 0.000578 2.193265
  149. details: Ukraine_BA_Catacomb.SG Anatolia_N -0.000431 -2.348388
  150. dscore: Anatolia_N f4: 0.000000 Z: 0.002247
  151.  
  152. details: Megiddo_MLBA Iran_GanjDareh_N -0.000269 -1.027962
  153. details: Ukraine_BA_Catacomb.SG Iran_GanjDareh_N 0.000067 0.449752
  154. dscore: Iran_GanjDareh_N f4: -0.000077 Z: -0.467125
  155.  
  156. details: Megiddo_MLBA Russia_UstBelaya_Angara -0.000822 -2.996525
  157. details: Ukraine_BA_Catacomb.SG Russia_UstBelaya_Angara 0.000331 2.077882
  158. dscore: Russia_UstBelaya_Angara f4: -0.000162 Z: -0.940460
  159.  
  160. details: Megiddo_MLBA ONG.SG -0.000302 -1.106258
  161. details: Ukraine_BA_Catacomb.SG ONG.SG 0.000365 2.457473
  162. dscore: ONG.SG f4: 0.000080 Z: 0.475912
  163.  
  164. details: Megiddo_MLBA Botai -0.001381 -4.417262
  165. details: Ukraine_BA_Catacomb.SG Botai 0.000673 4.054571
  166. dscore: Botai f4: -0.000205 Z: -1.074542
  167.  
  168. details: Megiddo_MLBA Russia_MLBA_Sintashta -0.000883 -3.454044
  169. details: Ukraine_BA_Catacomb.SG Russia_MLBA_Sintashta 0.000621 3.321932
  170. dscore: Russia_MLBA_Sintashta f4: -0.000022 Z: -0.120419
  171.  
  172. details: Megiddo_MLBA Uzbekistan_BA_Dzharkutan1 -0.000183 -0.753999
  173. details: Ukraine_BA_Catacomb.SG Uzbekistan_BA_Dzharkutan1 -0.000118 -0.770604
  174. dscore: Uzbekistan_BA_Dzharkutan1 f4: -0.000146 Z: -0.924580
  175.  
  176. gendstat: Cameroon_SMA.DG EEHG -0.462
  177. gendstat: Cameroon_SMA.DG WSHG -0.818
  178. gendstat: Cameroon_SMA.DG PPN 0.067
  179. gendstat: Cameroon_SMA.DG WEHG 0.226
  180. gendstat: Cameroon_SMA.DG Anatolia_N 0.002
  181. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N -0.467
  182. gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara -0.940
  183. gendstat: Cameroon_SMA.DG ONG.SG 0.476
  184. gendstat: Cameroon_SMA.DG Botai -1.075
  185. gendstat: Cameroon_SMA.DG Russia_MLBA_Sintashta -0.120
  186. gendstat: Cameroon_SMA.DG Uzbekistan_BA_Dzharkutan1 -0.925
  187. gendstat: EEHG WSHG -0.540
  188. gendstat: EEHG PPN 0.548
  189. gendstat: EEHG WEHG 0.918
  190. gendstat: EEHG Anatolia_N 0.551
  191. gendstat: EEHG Iran_GanjDareh_N 0.025
  192. gendstat: EEHG Russia_UstBelaya_Angara -0.570
  193. gendstat: EEHG ONG.SG 0.975
  194. gendstat: EEHG Botai -0.787
  195. gendstat: EEHG Russia_MLBA_Sintashta 0.458
  196. gendstat: EEHG Uzbekistan_BA_Dzharkutan1 -0.455
  197. gendstat: WSHG PPN 0.899
  198. gendstat: WSHG WEHG 1.264
  199. gendstat: WSHG Anatolia_N 0.915
  200. gendstat: WSHG Iran_GanjDareh_N 0.508
  201. gendstat: WSHG Russia_UstBelaya_Angara 0.037
  202. gendstat: WSHG ONG.SG 1.414
  203. gendstat: WSHG Botai -0.232
  204. gendstat: WSHG Russia_MLBA_Sintashta 0.941
  205. gendstat: WSHG Uzbekistan_BA_Dzharkutan1 0.131
  206. gendstat: PPN WEHG 0.205
  207. gendstat: PPN Anatolia_N -0.095
  208. gendstat: PPN Iran_GanjDareh_N -0.535
  209. gendstat: PPN Russia_UstBelaya_Angara -1.059
  210. gendstat: PPN ONG.SG 0.388
  211. gendstat: PPN Botai -1.164
  212. gendstat: PPN Russia_MLBA_Sintashta -0.246
  213. gendstat: PPN Uzbekistan_BA_Dzharkutan1 -1.080
  214. gendstat: WEHG Anatolia_N -0.363
  215. gendstat: WEHG Iran_GanjDareh_N -0.770
  216. gendstat: WEHG Russia_UstBelaya_Angara -1.428
  217. gendstat: WEHG ONG.SG 0.220
  218. gendstat: WEHG Botai -1.507
  219. gendstat: WEHG Russia_MLBA_Sintashta -0.634
  220. gendstat: WEHG Uzbekistan_BA_Dzharkutan1 -1.394
  221. gendstat: Anatolia_N Iran_GanjDareh_N -0.562
  222. gendstat: Anatolia_N Russia_UstBelaya_Angara -1.160
  223. gendstat: Anatolia_N ONG.SG 0.528
  224. gendstat: Anatolia_N Botai -1.177
  225. gendstat: Anatolia_N Russia_MLBA_Sintashta -0.231
  226. gendstat: Anatolia_N Uzbekistan_BA_Dzharkutan1 -1.269
  227. gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara -0.616
  228. gendstat: Iran_GanjDareh_N ONG.SG 1.079
  229. gendstat: Iran_GanjDareh_N Botai -0.752
  230. gendstat: Iran_GanjDareh_N Russia_MLBA_Sintashta 0.418
  231. gendstat: Iran_GanjDareh_N Uzbekistan_BA_Dzharkutan1 -0.639
  232. gendstat: Russia_UstBelaya_Angara ONG.SG 1.888
  233. gendstat: Russia_UstBelaya_Angara Botai -0.283
  234. gendstat: Russia_UstBelaya_Angara Russia_MLBA_Sintashta 1.094
  235. gendstat: Russia_UstBelaya_Angara Uzbekistan_BA_Dzharkutan1 0.126
  236. gendstat: ONG.SG Botai -1.690
  237. gendstat: ONG.SG Russia_MLBA_Sintashta -0.710
  238. gendstat: ONG.SG Uzbekistan_BA_Dzharkutan1 -1.694
  239. gendstat: Botai Russia_MLBA_Sintashta 1.193
  240. gendstat: Botai Uzbekistan_BA_Dzharkutan1 0.371
  241. gendstat: Russia_MLBA_Sintashta Uzbekistan_BA_Dzharkutan1 -1.114
  242.  
  243. ##end of qpAdm: 388.842 seconds cpu 1294.426 Mbytes in use
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