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misnomer001

spgt_o sintashta

misnomer001
Mar 14th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1620409338
  4. read 1073741824 bytes
  5. read 2057898697 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. SPGT_o
  11. Uzbekistan_BA_Dzharkutan1
  12. Russia_MLBA_Sintashta
  13. SPGT
  14.  
  15. right pops:
  16. Cameroon_SMA.DG
  17. EEHG
  18. WSHG
  19. PPN
  20. WEHG
  21. Anatolia_N
  22. Iran_GanjDareh_N
  23. Russia_UstBelaya_Angara
  24. ONG.SG
  25. Botai
  26.  
  27. 0 SPGT_o 2
  28. 1 Uzbekistan_BA_Dzharkutan1 7
  29. 2 Russia_MLBA_Sintashta 36
  30. 3 SPGT 78
  31. 4 Cameroon_SMA.DG 1
  32. 5 EEHG 5
  33. 6 WSHG 3
  34. 7 PPN 11
  35. 8 WEHG 33
  36. 9 Anatolia_N 22
  37. 10 Iran_GanjDareh_N 8
  38. 11 Russia_UstBelaya_Angara 8
  39. 12 ONG.SG 6
  40. 13 Botai 2
  41. jackknife block size: 0.050
  42. snps: 1150508 indivs: 222
  43. number of blocks for block jackknife: 713
  44. ## ncols: 1150508
  45. coverage: SPGT_o 673520
  46. coverage: Uzbekistan_BA_Dzharkutan1 1054006
  47. coverage: Russia_MLBA_Sintashta 1128449
  48. coverage: SPGT 1133349
  49. coverage: Cameroon_SMA.DG 1140138
  50. coverage: EEHG 1052093
  51. coverage: WSHG 858019
  52. coverage: PPN 847771
  53. coverage: WEHG 1140599
  54. coverage: Anatolia_N 1139031
  55. coverage: Iran_GanjDareh_N 1057358
  56. coverage: Russia_UstBelaya_Angara 1072574
  57. coverage: ONG.SG 1143397
  58. coverage: Botai 926654
  59. dof (jackknife): 624.100
  60. numsnps used: 1150508
  61. codimension 1
  62. f4info:
  63. f4rank: 2 dof: 7 chisq: 3.723 tail: 0.811059746 dofdiff: 9 chisqdiff: -3.723 taildiff: 1
  64. B:
  65. scale 1.000 1.000
  66. EEHG 1.351 -0.307
  67. WSHG 0.829 -0.432
  68. PPN 0.829 1.045
  69. WEHG 1.951 -0.308
  70. Anatolia_N 1.135 0.958
  71. Iran_GanjDareh_N -0.427 1.959
  72. Russia_UstBelaya_Angara 0.038 -1.079
  73. ONG.SG -0.260 -1.149
  74. Botai 0.676 -0.540
  75. A:
  76. scale 682.604 1773.402
  77. Uzbekistan_BA_Dzharkutan1 -0.391 1.699
  78. Russia_MLBA_Sintashta 1.590 0.191
  79. SPGT -0.564 -0.278
  80.  
  81.  
  82. full rank
  83. f4info:
  84. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 3.723 taildiff: 0.811059746
  85. B:
  86. scale 887.047 405.505 1338.387
  87. EEHG -0.925 1.287 -1.393
  88. WSHG -0.762 0.789 -0.785
  89. PPN 0.811 1.003 -0.618
  90. WEHG -1.102 1.912 -1.885
  91. Anatolia_N 0.463 1.238 -1.113
  92. Iran_GanjDareh_N 1.952 -0.273 0.170
  93. Russia_UstBelaya_Angara -0.722 0.102 0.514
  94. ONG.SG -0.696 -0.211 0.761
  95. Botai -0.812 0.630 -0.629
  96. A:
  97. scale 1.732 1.732 1.732
  98. Uzbekistan_BA_Dzharkutan1 1.732 0.000 0.000
  99. Russia_MLBA_Sintashta 0.000 1.732 0.000
  100. SPGT 0.000 0.000 1.732
  101.  
  102.  
  103. best coefficients: 0.080 0.255 0.664
  104. Jackknife mean: 0.080074308 0.255308927 0.664616765
  105. std. errors: 0.064 0.031 0.070
  106.  
  107. error covariance (* 1,000,000)
  108. 4152 -93 -4058
  109. -93 934 -841
  110. -4058 -841 4900
  111.  
  112.  
  113. summ: SPGT_o 3 0.811060 0.080 0.255 0.665 4152 -93 -4058 934 -841 ...
  114. 4900
  115.  
  116. fixed pat wt dof chisq tail prob
  117. 000 0 7 3.723 0.81106 0.080 0.255 0.664
  118. 001 1 8 89.501 5.87248e-16 0.631 0.369 0.000
  119. 010 1 8 70.494 3.91782e-12 0.088 0.000 0.912
  120. 100 1 8 5.717 0.678889 0.000 0.255 0.745
  121. 011 2 9 227.309 0 1.000 0.000 0.000
  122. 101 2 9 483.564 0 0.000 1.000 0.000
  123. 110 2 9 71.823 6.67907e-12 0.000 0.000 1.000
  124. best pat: 000 0.81106 - -
  125. best pat: 100 0.678889 chi(nested): 1.994 p-value for nested model: 0.157927
  126. best pat: 110 6.67907e-12 chi(nested): 66.106 p-value for nested model: 4.27363e-16
  127.  
  128. coeffs: 0.080 0.255 0.664
  129.  
  130. ## dscore:: f_4(Base, Fit, Rbase, right2)
  131. ## genstat:: f_4(Base, Fit, right1, right2)
  132.  
  133. details: Uzbekistan_BA_Dzharkutan1 EEHG -0.001043 -3.218341
  134. details: Russia_MLBA_Sintashta EEHG 0.003174 10.077780
  135. details: SPGT EEHG -0.001041 -3.419945
  136. dscore: EEHG f4: 0.000036 Z: 0.118493
  137.  
  138. details: Uzbekistan_BA_Dzharkutan1 WSHG -0.000859 -2.336316
  139. details: Russia_MLBA_Sintashta WSHG 0.001947 5.348337
  140. details: SPGT WSHG -0.000587 -1.677966
  141. dscore: WSHG f4: 0.000039 Z: 0.111875
  142.  
  143. details: Uzbekistan_BA_Dzharkutan1 PPN 0.000914 2.801542
  144. details: Russia_MLBA_Sintashta PPN 0.002474 7.655752
  145. details: SPGT PPN -0.000462 -1.509189
  146. dscore: PPN f4: 0.000398 Z: 1.307035
  147.  
  148. details: Uzbekistan_BA_Dzharkutan1 WEHG -0.001243 -3.893087
  149. details: Russia_MLBA_Sintashta WEHG 0.004715 15.090753
  150. details: SPGT WEHG -0.001409 -4.759589
  151. dscore: WEHG f4: 0.000169 Z: 0.574295
  152.  
  153. details: Uzbekistan_BA_Dzharkutan1 Anatolia_N 0.000522 1.888514
  154. details: Russia_MLBA_Sintashta Anatolia_N 0.003052 11.254273
  155. details: SPGT Anatolia_N -0.000832 -3.241714
  156. dscore: Anatolia_N f4: 0.000269 Z: 1.057656
  157.  
  158. details: Uzbekistan_BA_Dzharkutan1 Iran_GanjDareh_N 0.002200 7.587555
  159. details: Russia_MLBA_Sintashta Iran_GanjDareh_N -0.000672 -2.441759
  160. details: SPGT Iran_GanjDareh_N 0.000127 0.473797
  161. dscore: Iran_GanjDareh_N f4: 0.000089 Z: 0.336137
  162.  
  163. details: Uzbekistan_BA_Dzharkutan1 Russia_UstBelaya_Angara -0.000814 -2.819694
  164. details: Russia_MLBA_Sintashta Russia_UstBelaya_Angara 0.000253 0.888369
  165. details: SPGT Russia_UstBelaya_Angara 0.000384 1.385735
  166. dscore: Russia_UstBelaya_Angara f4: 0.000255 Z: 0.931905
  167.  
  168. details: Uzbekistan_BA_Dzharkutan1 ONG.SG -0.000784 -2.663287
  169. details: Russia_MLBA_Sintashta ONG.SG -0.000519 -1.753352
  170. details: SPGT ONG.SG 0.000568 2.017080
  171. dscore: ONG.SG f4: 0.000182 Z: 0.652759
  172.  
  173. details: Uzbekistan_BA_Dzharkutan1 Botai -0.000915 -2.716611
  174. details: Russia_MLBA_Sintashta Botai 0.001553 4.623674
  175. details: SPGT Botai -0.000470 -1.439448
  176. dscore: Botai f4: 0.000011 Z: 0.035219
  177.  
  178. gendstat: Cameroon_SMA.DG EEHG 0.118
  179. gendstat: Cameroon_SMA.DG WSHG 0.112
  180. gendstat: Cameroon_SMA.DG PPN 1.307
  181. gendstat: Cameroon_SMA.DG WEHG 0.574
  182. gendstat: Cameroon_SMA.DG Anatolia_N 1.058
  183. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N 0.336
  184. gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara 0.932
  185. gendstat: Cameroon_SMA.DG ONG.SG 0.653
  186. gendstat: Cameroon_SMA.DG Botai 0.035
  187. gendstat: EEHG WSHG 0.012
  188. gendstat: EEHG PPN 1.244
  189. gendstat: EEHG WEHG 0.584
  190. gendstat: EEHG Anatolia_N 0.970
  191. gendstat: EEHG Iran_GanjDareh_N 0.203
  192. gendstat: EEHG Russia_UstBelaya_Angara 0.840
  193. gendstat: EEHG ONG.SG 0.495
  194. gendstat: EEHG Botai -0.091
  195. gendstat: WSHG PPN 1.090
  196. gendstat: WSHG WEHG 0.439
  197. gendstat: WSHG Anatolia_N 0.765
  198. gendstat: WSHG Iran_GanjDareh_N 0.164
  199. gendstat: WSHG Russia_UstBelaya_Angara 0.777
  200. gendstat: WSHG ONG.SG 0.436
  201. gendstat: WSHG Botai -0.100
  202. gendstat: PPN WEHG -0.924
  203. gendstat: PPN Anatolia_N -0.687
  204. gendstat: PPN Iran_GanjDareh_N -1.168
  205. gendstat: PPN Russia_UstBelaya_Angara -0.492
  206. gendstat: PPN ONG.SG -0.684
  207. gendstat: PPN Botai -1.209
  208. gendstat: WEHG Anatolia_N 0.515
  209. gendstat: WEHG Iran_GanjDareh_N -0.304
  210. gendstat: WEHG Russia_UstBelaya_Angara 0.330
  211. gendstat: WEHG ONG.SG 0.045
  212. gendstat: WEHG Botai -0.548
  213. gendstat: Anatolia_N Iran_GanjDareh_N -0.815
  214. gendstat: Anatolia_N Russia_UstBelaya_Angara -0.059
  215. gendstat: Anatolia_N ONG.SG -0.323
  216. gendstat: Anatolia_N Botai -0.909
  217. gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara 0.648
  218. gendstat: Iran_GanjDareh_N ONG.SG 0.336
  219. gendstat: Iran_GanjDareh_N Botai -0.268
  220. gendstat: Russia_UstBelaya_Angara ONG.SG -0.307
  221. gendstat: Russia_UstBelaya_Angara Botai -0.957
  222. gendstat: ONG.SG Botai -0.557
  223.  
  224. ##end of qpAdm: 375.112 seconds cpu 1257.619 Mbytes in use
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