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misnomer001

Hasanlu_LBA_A = MBA + Sarazm + IVC pass great p-value

misnomer001
Sep 20th, 2022
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  1. qpAdm: parameter file: parqpa3
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: fstats13.txt
  5. popleft: left
  6. popright: right
  7. details: YES
  8. allsnps: YES
  9. inbreed: NO
  10. oldallsnps: NO
  11. ## qpAdm version: 1520
  12. seed: 2115827478
  13. inbreed set NO
  14. inbreed set NO
  15.  
  16. left pops:
  17. IRN_Hasanlu_LBA_A
  18. IRN_Hasanlu_MBA
  19. Tajikistan_C_Sarazm
  20. IVCp
  21.  
  22. right pops:
  23. Mbuti.DG
  24. IRQ_PPN
  25. EHG
  26. CHG
  27. Iran_GanjDareh_N
  28. Serbia_IronGates_Mesolithic
  29. Turkey_N
  30. ONG.SG
  31. Tarim_EMBA1
  32. Uzbekistan_SappaliTepe_BA
  33. Iran_BA1_ShahrISokhta
  34.  
  35. codimension 1
  36. f4info:
  37. f4rank: 2 dof: 8 chisq: 9.547 tail: 0.298302378 dofdiff: 10 chisqdiff: -9.547 taildiff: 1
  38. B:
  39. scale 1.000 1.000
  40. IRQ_PPN 1.260 -0.195
  41. EHG 0.755 0.608
  42. CHG 0.946 0.502
  43. Iran_GanjDareh_N 0.525 1.066
  44. Serbia_IronGates_Mesolithic 1.231 -0.604
  45. Turkey_N 1.790 -1.333
  46. ONG.SG -1.094 0.339
  47. Tarim_EMBA1 0.058 2.131
  48. Uzbekistan_SappaliTepe_BA 0.760 0.772
  49. Iran_BA1_ShahrISokhta 0.419 0.899
  50. A:
  51. scale 606.588 997.226
  52. IRN_Hasanlu_MBA 0.454 -1.010
  53. Tajikistan_C_Sarazm 0.020 1.358
  54. IVCp -1.671 -0.367
  55.  
  56.  
  57. full rank
  58. f4info:
  59. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 8 chisqdiff: 9.547 taildiff: 0.298302378
  60. B:
  61. scale 686.129 688.322 385.848
  62. IRQ_PPN 1.145 0.288 -1.134
  63. EHG -0.003 0.702 -0.867
  64. CHG -0.006 0.427 -1.122
  65. Iran_GanjDareh_N -0.446 1.120 -0.678
  66. Serbia_IronGates_Mesolithic 1.239 -0.278 -1.131
  67. Turkey_N 2.023 -0.951 -1.625
  68. ONG.SG -0.684 0.485 1.175
  69. Tarim_EMBA1 -1.542 1.974 -0.386
  70. Uzbekistan_SappaliTepe_BA 0.100 1.026 -0.806
  71. Iran_BA1_ShahrISokhta 0.081 1.349 -0.376
  72. A:
  73. scale 1.732 1.732 1.732
  74. IRN_Hasanlu_MBA 1.732 0.000 0.000
  75. Tajikistan_C_Sarazm 0.000 1.732 0.000
  76. IVCp 0.000 0.000 1.732
  77.  
  78.  
  79. best coefficients: 0.476 0.390 0.134
  80. totmean: 0.476 0.390 0.134
  81. boot mean: 0.476 0.390 0.134
  82. std. errors: 0.039 0.064 0.055
  83.  
  84. error covariance (* 1,000,000)
  85. 1516 -1279 -236
  86. -1279 4088 -2808
  87. -236 -2808 3045
  88.  
  89.  
  90. summ: IRN_Hasanlu_LBA_A 3 0.298302 0.476 0.390 0.134 1516 -1279 -236 4088 -2808 ...
  91. 3045
  92.  
  93. fixed pat wt dof chisq tail prob
  94. 000 0 8 9.547 0.298302 0.476 0.390 0.134
  95. 001 1 9 15.463 0.0789839 0.490 0.510 0.000
  96. 010 1 9 45.515 7.40947e-07 0.623 0.000 0.377
  97. 100 1 9 152.065 3.29281e-28 0.000 0.934 0.066
  98. 011 2 10 122.773 1.38373e-21 1.000 0.000 0.000
  99. 101 2 10 152.918 9.34875e-28 0.000 1.000 0.000
  100. 110 2 10 365.451 0 0.000 0.000 1.000
  101. best pat: 000 0.298302 - -
  102. best pat: 001 0.0789839 chi(nested): 5.916 p-value for nested model: 0.0150023
  103. best pat: 011 1.38373e-21 chi(nested): 107.310 p-value for nested model: 3.80697e-25
  104.  
  105. coeffs: 0.476 0.390 0.134
  106.  
  107. ## dscore:: f_4(Base, Fit, Rbase, right2)
  108. ## genstat:: f_4(Base, Fit, right1, right2)
  109.  
  110. details: IRN_Hasanlu_MBA IRQ_PPN 0.001669 2.646913
  111. details: Tajikistan_C_Sarazm IRQ_PPN 0.000419 0.718612
  112. details: IVCp IRQ_PPN -0.002939 -5.712683
  113. dscore: IRQ_PPN f4: 0.000564 Z: 1.091831
  114.  
  115. details: IRN_Hasanlu_MBA EHG -0.000004 -0.007108
  116. details: Tajikistan_C_Sarazm EHG 0.001020 2.021733
  117. details: IVCp EHG -0.002247 -4.946809
  118. dscore: EHG f4: 0.000095 Z: 0.206445
  119.  
  120. details: IRN_Hasanlu_MBA CHG -0.000009 -0.015500
  121. details: Tajikistan_C_Sarazm CHG 0.000620 1.181306
  122. details: IVCp CHG -0.002908 -6.313712
  123. dscore: CHG f4: -0.000152 Z: -0.315507
  124.  
  125. details: IRN_Hasanlu_MBA Iran_GanjDareh_N -0.000650 -1.328192
  126. details: Tajikistan_C_Sarazm Iran_GanjDareh_N 0.001627 3.747480
  127. details: IVCp Iran_GanjDareh_N -0.001758 -4.504236
  128. dscore: Iran_GanjDareh_N f4: 0.000090 Z: 0.231204
  129.  
  130. details: IRN_Hasanlu_MBA Serbia_IronGates_Mesolithic 0.001806 3.510510
  131. details: Tajikistan_C_Sarazm Serbia_IronGates_Mesolithic -0.000404 -0.861193
  132. details: IVCp Serbia_IronGates_Mesolithic -0.002931 -7.031766
  133. dscore: Serbia_IronGates_Mesolithic f4: 0.000309 Z: 0.726079
  134.  
  135. details: IRN_Hasanlu_MBA Turkey_N 0.002949 6.459024
  136. details: Tajikistan_C_Sarazm Turkey_N -0.001381 -3.425900
  137. details: IVCp Turkey_N -0.004212 -11.809975
  138. dscore: Turkey_N f4: 0.000300 Z: 0.814758
  139.  
  140. details: IRN_Hasanlu_MBA ONG.SG -0.000997 -1.933405
  141. details: Tajikistan_C_Sarazm ONG.SG 0.000704 1.494238
  142. details: IVCp ONG.SG 0.003047 7.340836
  143. dscore: ONG.SG f4: 0.000208 Z: 0.505524
  144.  
  145. details: IRN_Hasanlu_MBA Tarim_EMBA1 -0.002247 -3.671157
  146. details: Tajikistan_C_Sarazm Tarim_EMBA1 0.002868 5.161954
  147. details: IVCp Tarim_EMBA1 -0.001001 -2.058728
  148. dscore: Tarim_EMBA1 f4: -0.000085 Z: -0.169734
  149.  
  150. details: IRN_Hasanlu_MBA Uzbekistan_SappaliTepe_BA 0.000145 0.334402
  151. details: Tajikistan_C_Sarazm Uzbekistan_SappaliTepe_BA 0.001491 3.730219
  152. details: IVCp Uzbekistan_SappaliTepe_BA -0.002090 -6.173016
  153. dscore: Uzbekistan_SappaliTepe_BA f4: 0.000371 Z: 1.048657
  154.  
  155. details: IRN_Hasanlu_MBA Iran_BA1_ShahrISokhta 0.000117 0.257070
  156. details: Tajikistan_C_Sarazm Iran_BA1_ShahrISokhta 0.001960 4.523901
  157. details: IVCp Iran_BA1_ShahrISokhta -0.000975 -2.592022
  158. dscore: Iran_BA1_ShahrISokhta f4: 0.000690 Z: 1.824806
  159.  
  160. gendstat: Mbuti.DG IRQ_PPN 1.092
  161. gendstat: Mbuti.DG EHG 0.206
  162. gendstat: Mbuti.DG CHG -0.316
  163. gendstat: Mbuti.DG Iran_GanjDareh_N 0.231
  164. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 0.726
  165. gendstat: Mbuti.DG Turkey_N 0.815
  166. gendstat: Mbuti.DG ONG.SG 0.506
  167. gendstat: Mbuti.DG Tarim_EMBA1 -0.170
  168. gendstat: Mbuti.DG Uzbekistan_SappaliTepe_BA 1.049
  169. gendstat: Mbuti.DG Iran_BA1_ShahrISokhta 1.825
  170. gendstat: IRQ_PPN EHG -0.865
  171. gendstat: IRQ_PPN CHG -1.347
  172. gendstat: IRQ_PPN Iran_GanjDareh_N -0.993
  173. gendstat: IRQ_PPN Serbia_IronGates_Mesolithic -0.547
  174. gendstat: IRQ_PPN Turkey_N -0.634
  175. gendstat: IRQ_PPN ONG.SG -0.680
  176. gendstat: IRQ_PPN Tarim_EMBA1 -1.127
  177. gendstat: IRQ_PPN Uzbekistan_SappaliTepe_BA -0.464
  178. gendstat: IRQ_PPN Iran_BA1_ShahrISokhta 0.275
  179. gendstat: EHG CHG -0.511
  180. gendstat: EHG Iran_GanjDareh_N -0.011
  181. gendstat: EHG Serbia_IronGates_Mesolithic 0.605
  182. gendstat: EHG Turkey_N 0.524
  183. gendstat: EHG ONG.SG 0.254
  184. gendstat: EHG Tarim_EMBA1 -0.456
  185. gendstat: EHG Uzbekistan_SappaliTepe_BA 0.725
  186. gendstat: EHG Iran_BA1_ShahrISokhta 1.446
  187. gendstat: CHG Iran_GanjDareh_N 0.552
  188. gendstat: CHG Serbia_IronGates_Mesolithic 1.060
  189. gendstat: CHG Turkey_N 1.092
  190. gendstat: CHG ONG.SG 0.747
  191. gendstat: CHG Tarim_EMBA1 0.127
  192. gendstat: CHG Uzbekistan_SappaliTepe_BA 1.393
  193. gendstat: CHG Iran_BA1_ShahrISokhta 2.099
  194. gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic 0.533
  195. gendstat: Iran_GanjDareh_N Turkey_N 0.609
  196. gendstat: Iran_GanjDareh_N ONG.SG 0.289
  197. gendstat: Iran_GanjDareh_N Tarim_EMBA1 -0.365
  198. gendstat: Iran_GanjDareh_N Uzbekistan_SappaliTepe_BA 1.016
  199. gendstat: Iran_GanjDareh_N Iran_BA1_ShahrISokhta 1.902
  200. gendstat: Serbia_IronGates_Mesolithic Turkey_N -0.032
  201. gendstat: Serbia_IronGates_Mesolithic ONG.SG -0.244
  202. gendstat: Serbia_IronGates_Mesolithic Tarim_EMBA1 -0.896
  203. gendstat: Serbia_IronGates_Mesolithic Uzbekistan_SappaliTepe_BA 0.189
  204. gendstat: Serbia_IronGates_Mesolithic Iran_BA1_ShahrISokhta 1.083
  205. gendstat: Turkey_N ONG.SG -0.225
  206. gendstat: Turkey_N Tarim_EMBA1 -0.813
  207. gendstat: Turkey_N Uzbekistan_SappaliTepe_BA 0.270
  208. gendstat: Turkey_N Iran_BA1_ShahrISokhta 1.311
  209. gendstat: ONG.SG Tarim_EMBA1 -0.664
  210. gendstat: ONG.SG Uzbekistan_SappaliTepe_BA 0.450
  211. gendstat: ONG.SG Iran_BA1_ShahrISokhta 1.273
  212. gendstat: Tarim_EMBA1 Uzbekistan_SappaliTepe_BA 1.106
  213. gendstat: Tarim_EMBA1 Iran_BA1_ShahrISokhta 1.807
  214. gendstat: Uzbekistan_SappaliTepe_BA Iran_BA1_ShahrISokhta 1.317
  215.  
  216. ##end of qpAdm: 6.573 seconds cpu 0.889 Mbytes in use
  217.  
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