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  1. cat dirac.sh.e196 dirac.sh.o196
  2. + set -e
  3. + nodefile=/tmp/196.cmbcluster.nodelist
  4. + echo group main
  5. ++ cat /var/spool/torque/aux//196.cmbcluster
  6. + nodes='node034
  7. node034
  8. node034
  9. node034
  10. node034
  11. node034
  12. node034
  13. node034
  14. node034
  15. node034
  16. node034
  17. node034
  18. node033
  19. node033
  20. node033
  21. node033
  22. node033
  23. node033
  24. node033
  25. node033
  26. node033
  27. node033
  28. node033
  29. node033'
  30. + for node in '$nodes'
  31. + echo host node034
  32. + for node in '$nodes'
  33. + echo host node034
  34. + for node in '$nodes'
  35. + echo host node034
  36. + for node in '$nodes'
  37. + echo host node034
  38. + for node in '$nodes'
  39. + echo host node034
  40. + for node in '$nodes'
  41. + echo host node034
  42. + for node in '$nodes'
  43. + echo host node034
  44. + for node in '$nodes'
  45. + echo host node034
  46. + for node in '$nodes'
  47. + echo host node034
  48. + for node in '$nodes'
  49. + echo host node034
  50. + for node in '$nodes'
  51. + echo host node034
  52. + for node in '$nodes'
  53. + echo host node034
  54. + for node in '$nodes'
  55. + echo host node033
  56. + for node in '$nodes'
  57. + echo host node033
  58. + for node in '$nodes'
  59. + echo host node033
  60. + for node in '$nodes'
  61. + echo host node033
  62. + for node in '$nodes'
  63. + echo host node033
  64. + for node in '$nodes'
  65. + echo host node033
  66. + for node in '$nodes'
  67. + echo host node033
  68. + for node in '$nodes'
  69. + echo host node033
  70. + for node in '$nodes'
  71. + echo host node033
  72. + for node in '$nodes'
  73. + echo host node033
  74. + for node in '$nodes'
  75. + echo host node033
  76. + for node in '$nodes'
  77. + echo host node033
  78. ++ which mpiexec
  79. + MPIEXEC=/shared/openmpi-1.6.1/gcc/bin/mpiexec
  80. + NAMD_HOME=/home/mgx/testing/namd-ibverbs/2.9-ibverbs
  81. + CHARMARGS='+p48 ++nodelist /tmp/196.cmbcluster.nodelist'
  82. + /home/mgx/testing/namd-ibverbs/2.9-ibverbs/charmrun +p48 ++nodelist /tmp/196.cmbcluster.nodelist ++verbose ++mpiexec ++remote-shell /shared/openmpi-1.6.1/gcc/bin/mpiexec /home/mgx/testing/namd-ibverbs/2.9-ibverbs/namd2
  83. Charmrun> charmrun started...
  84. Charmrun> mpiexec started
  85. Charmrun> node programs all started
  86. Charmrun> node programs all connected
  87. Charmrun> started all node programs in 3.777 seconds.
  88. Charmrun: error on request socket--
  89. Socket closed before recv.
  90. mpiexec: killing job...
  91.  
  92. Charmrun remote shell(127.0.0.1.0)> remote responding...
  93. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  94. Charmrun remote shell(127.0.0.1.0)> remote responding...
  95. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  96. Charmrun remote shell(127.0.0.1.0)> remote responding...
  97. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  98. Charmrun remote shell(127.0.0.1.0)> remote responding...
  99. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  100. Charmrun remote shell(127.0.0.1.0)> remote responding...
  101. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  102. Charmrun remote shell(127.0.0.1.0)> remote responding...
  103. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  104. Charmrun remote shell(127.0.0.1.0)> remote responding...
  105. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  106. Charmrun remote shell(127.0.0.1.0)> remote responding...
  107. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  108. Charmrun remote shell(127.0.0.1.0)> remote responding...
  109. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  110. Charmrun remote shell(127.0.0.1.0)> remote responding...
  111. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  112. Charmrun remote shell(127.0.0.1.0)> remote responding...
  113. Charmrun remote shell(127.0.0.1.0)> remote responding...
  114. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  115. Charmrun remote shell(127.0.0.1.0)> remote responding...
  116. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  117. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  118. Charmrun remote shell(127.0.0.1.0)> remote responding...
  119. Charmrun remote shell(127.0.0.1.0)> remote responding...
  120. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  121. Charmrun remote shell(127.0.0.1.0)> remote responding...
  122. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  123. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  124. Charmrun remote shell(127.0.0.1.0)> remote responding...
  125. Charmrun remote shell(127.0.0.1.0)> remote responding...
  126. Charmrun remote shell(127.0.0.1.0)> remote responding...
  127. Charmrun remote shell(127.0.0.1.0)> remote responding...
  128. Charmrun remote shell(127.0.0.1.0)> remote responding...
  129. Charmrun remote shell(127.0.0.1.0)> remote responding...
  130. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  131. Charmrun remote shell(127.0.0.1.0)> remote responding...
  132. Charmrun remote shell(127.0.0.1.0)> remote responding...
  133. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  134. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  135. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  136. Charmrun remote shell(127.0.0.1.0)> remote responding...
  137. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  138. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  139. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  140. Charmrun remote shell(127.0.0.1.0)> remote responding...
  141. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  142. Charmrun remote shell(127.0.0.1.0)> remote responding...
  143. Charmrun remote shell(127.0.0.1.0)> remote responding...
  144. Charmrun remote shell(127.0.0.1.0)> remote responding...
  145. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  146. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  147. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  148. Charmrun remote shell(127.0.0.1.0)> remote responding...
  149. Charmrun remote shell(127.0.0.1.0)> remote responding...
  150. Charmrun remote shell(127.0.0.1.0)> remote responding...
  151. Charmrun remote shell(127.0.0.1.0)> remote responding...
  152. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  153. Charmrun remote shell(127.0.0.1.0)> remote responding...
  154. Charmrun remote shell(127.0.0.1.0)> remote responding...
  155. Charmrun remote shell(127.0.0.1.0)> remote responding...
  156. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  157. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  158. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  159. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  160. Charmrun remote shell(127.0.0.1.0)> remote responding...
  161. Charmrun remote shell(127.0.0.1.0)> remote responding...
  162. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  163. Charmrun remote shell(127.0.0.1.0)> remote responding...
  164. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  165. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  166. Charmrun remote shell(127.0.0.1.0)> remote responding...
  167. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  168. Charmrun remote shell(127.0.0.1.0)> remote responding...
  169. Charmrun remote shell(127.0.0.1.0)> remote responding...
  170. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  171. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  172. Charmrun remote shell(127.0.0.1.0)> remote responding...
  173. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  174. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  175. Charmrun remote shell(127.0.0.1.0)> remote responding...
  176. Charmrun remote shell(127.0.0.1.0)> remote responding...
  177. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  178. Charmrun remote shell(127.0.0.1.0)> remote responding...
  179. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  180. Charmrun remote shell(127.0.0.1.0)> remote responding...
  181. Charmrun remote shell(127.0.0.1.0)> remote responding...
  182. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  183. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  184. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  185. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  186. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  187. Charmrun remote shell(127.0.0.1.0)> starting node-program...
  188. Charmrun> adding client 0: "127.0.0.1", IP:127.0.0.1
  189. Charmrun> adding client 1: "127.0.0.1", IP:127.0.0.1
  190. Charmrun> adding client 2: "127.0.0.1", IP:127.0.0.1
  191. Charmrun> adding client 3: "127.0.0.1", IP:127.0.0.1
  192. Charmrun> adding client 4: "127.0.0.1", IP:127.0.0.1
  193. Charmrun> adding client 5: "127.0.0.1", IP:127.0.0.1
  194. Charmrun> adding client 6: "127.0.0.1", IP:127.0.0.1
  195. Charmrun> adding client 7: "127.0.0.1", IP:127.0.0.1
  196. Charmrun> adding client 8: "127.0.0.1", IP:127.0.0.1
  197. Charmrun> adding client 9: "127.0.0.1", IP:127.0.0.1
  198. Charmrun> adding client 10: "127.0.0.1", IP:127.0.0.1
  199. Charmrun> adding client 11: "127.0.0.1", IP:127.0.0.1
  200. Charmrun> adding client 12: "127.0.0.1", IP:127.0.0.1
  201. Charmrun> adding client 13: "127.0.0.1", IP:127.0.0.1
  202. Charmrun> adding client 14: "127.0.0.1", IP:127.0.0.1
  203. Charmrun> adding client 15: "127.0.0.1", IP:127.0.0.1
  204. Charmrun> adding client 16: "127.0.0.1", IP:127.0.0.1
  205. Charmrun> adding client 17: "127.0.0.1", IP:127.0.0.1
  206. Charmrun> adding client 18: "127.0.0.1", IP:127.0.0.1
  207. Charmrun> adding client 19: "127.0.0.1", IP:127.0.0.1
  208. Charmrun> adding client 20: "127.0.0.1", IP:127.0.0.1
  209. Charmrun> adding client 21: "127.0.0.1", IP:127.0.0.1
  210. Charmrun> adding client 22: "127.0.0.1", IP:127.0.0.1
  211. Charmrun> adding client 23: "127.0.0.1", IP:127.0.0.1
  212. Charmrun> adding client 24: "127.0.0.1", IP:127.0.0.1
  213. Charmrun> adding client 25: "127.0.0.1", IP:127.0.0.1
  214. Charmrun> adding client 26: "127.0.0.1", IP:127.0.0.1
  215. Charmrun> adding client 27: "127.0.0.1", IP:127.0.0.1
  216. Charmrun> adding client 28: "127.0.0.1", IP:127.0.0.1
  217. Charmrun> adding client 29: "127.0.0.1", IP:127.0.0.1
  218. Charmrun> adding client 30: "127.0.0.1", IP:127.0.0.1
  219. Charmrun> adding client 31: "127.0.0.1", IP:127.0.0.1
  220. Charmrun> adding client 32: "127.0.0.1", IP:127.0.0.1
  221. Charmrun> adding client 33: "127.0.0.1", IP:127.0.0.1
  222. Charmrun> adding client 34: "127.0.0.1", IP:127.0.0.1
  223. Charmrun> adding client 35: "127.0.0.1", IP:127.0.0.1
  224. Charmrun> adding client 36: "127.0.0.1", IP:127.0.0.1
  225. Charmrun> adding client 37: "127.0.0.1", IP:127.0.0.1
  226. Charmrun> adding client 38: "127.0.0.1", IP:127.0.0.1
  227. Charmrun> adding client 39: "127.0.0.1", IP:127.0.0.1
  228. Charmrun> adding client 40: "127.0.0.1", IP:127.0.0.1
  229. Charmrun> adding client 41: "127.0.0.1", IP:127.0.0.1
  230. Charmrun> adding client 42: "127.0.0.1", IP:127.0.0.1
  231. Charmrun> adding client 43: "127.0.0.1", IP:127.0.0.1
  232. Charmrun> adding client 44: "127.0.0.1", IP:127.0.0.1
  233. Charmrun> adding client 45: "127.0.0.1", IP:127.0.0.1
  234. Charmrun> adding client 46: "127.0.0.1", IP:127.0.0.1
  235. Charmrun> adding client 47: "127.0.0.1", IP:127.0.0.1
  236. Charmrun> Charmrun = 172.16.0.34, port = 38961
  237. Charmrun> IBVERBS version of charmrun
  238. Charmrun> Sending "$CmiMyNode 172.16.0.34 38961 23206 0" to client 0.
  239. Charmrun> find the node program "/home/mgx/testing/namd-ibverbs/2.9-ibverbs/namd2" at "/home/mgx" for 0.
  240. Charmrun> Starting /shared/openmpi-1.6.1/gcc/bin/mpiexec ./charmrun.23206
  241. Charmrun> Waiting for 0-th client to connect.
  242. Charmrun> Waiting for 1-th client to connect.
  243. Charmrun> Waiting for 2-th client to connect.
  244. Charmrun> Waiting for 3-th client to connect.
  245. Charmrun> Waiting for 4-th client to connect.
  246. Charmrun> Waiting for 5-th client to connect.
  247. Charmrun> Waiting for 6-th client to connect.
  248. Charmrun> Waiting for 7-th client to connect.
  249. Charmrun> Waiting for 8-th client to connect.
  250. Charmrun> Waiting for 9-th client to connect.
  251. Charmrun> Waiting for 10-th client to connect.
  252. Charmrun> Waiting for 11-th client to connect.
  253. Charmrun> Waiting for 12-th client to connect.
  254. Charmrun> Waiting for 13-th client to connect.
  255. Charmrun> Waiting for 14-th client to connect.
  256. Charmrun> Waiting for 15-th client to connect.
  257. Charmrun> Waiting for 16-th client to connect.
  258. Charmrun> Waiting for 17-th client to connect.
  259. Charmrun> Waiting for 18-th client to connect.
  260. Charmrun> Waiting for 19-th client to connect.
  261. Charmrun> Waiting for 20-th client to connect.
  262. Charmrun> Waiting for 21-th client to connect.
  263. Charmrun> Waiting for 22-th client to connect.
  264. Charmrun> Waiting for 23-th client to connect.
  265. Charmrun> Waiting for 24-th client to connect.
  266. Charmrun> Waiting for 25-th client to connect.
  267. Charmrun> Waiting for 26-th client to connect.
  268. Charmrun> Waiting for 27-th client to connect.
  269. Charmrun> Waiting for 28-th client to connect.
  270. Charmrun> Waiting for 29-th client to connect.
  271. Charmrun> Waiting for 30-th client to connect.
  272. Charmrun> Waiting for 31-th client to connect.
  273. Charmrun> Waiting for 32-th client to connect.
  274. Charmrun> Waiting for 33-th client to connect.
  275. Charmrun> Waiting for 34-th client to connect.
  276. Charmrun> Waiting for 35-th client to connect.
  277. Charmrun> Waiting for 36-th client to connect.
  278. Charmrun> Waiting for 37-th client to connect.
  279. Charmrun> Waiting for 38-th client to connect.
  280. Charmrun> Waiting for 39-th client to connect.
  281. Charmrun> Waiting for 40-th client to connect.
  282. Charmrun> Waiting for 41-th client to connect.
  283. Charmrun> Waiting for 42-th client to connect.
  284. Charmrun> Waiting for 43-th client to connect.
  285. Charmrun> Waiting for 44-th client to connect.
  286. Charmrun> Waiting for 45-th client to connect.
  287. Charmrun> Waiting for 46-th client to connect.
  288. Charmrun> Waiting for 47-th client to connect.
  289. Charmrun> All clients connected.
  290. Charmrun> IP tables sent.
  291. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  292. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  293. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  294. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  295. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  296. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  297. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  298. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  299. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  300. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  301. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  302. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  303. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  304. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  305. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  306. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  307. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  308. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  309. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  310. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  311. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  312. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  313. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  314. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  315. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  316. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  317. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  318. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  319. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  320. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  321. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  322. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  323. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  324. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  325. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  326. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  327. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  328. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  329. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  330. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  331. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  332. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  333. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  334. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  335. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  336. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  337. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
  338. Charmrun remote shell(127.0.0.1.0)> rsh phase successful.
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