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- qpAdm: parameter file: parqpadm.txt
- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- fstatsname: fstatsa.txt
- popleft: left.txt
- popright: right.txt
- details: YES
- ## qpAdm version: 1520
- seed: 1186599070
- *** recommended that inbreed be explicitly set ***
- inbreed set NO
- left pops:
- ponticgreek1
- Turkey_N
- CHG
- EHG
- Israel_Natufian
- right pops:
- Mbuti.DG
- Russia_Ust_Ishim.DG
- China_Tianyuan
- Goyet_Neanderthal.SG
- Russia_Sunghir3.SG
- Russia_Kostenki14.SG
- Russia_MA1_HG.SG
- Georgia_Satsurblia.SG
- Russia_DevilsCave_N.SG
- Papuan.DG
- Switzerland_Bichon.SG
- Morocco_Iberomaurusian
- Turkey_Epipaleolithic
- ONG.SG
- codimension 1
- f4info:
- f4rank: 3 dof: 10 chisq: 14.188 tail: 0.164600707 dofdiff: 12 chisqdiff: -14.188 taildiff: 1
- B:
- scale 1.000 1.000 1.000
- Russia_Ust_Ishim.DG 0.468 0.048 0.283
- China_Tianyuan 0.880 -0.120 0.007
- Goyet_Neanderthal.SG 0.051 -0.155 -0.125
- Russia_Sunghir3.SG 0.889 -0.227 0.390
- Russia_Kostenki14.SG 0.854 -0.207 0.329
- Russia_MA1_HG.SG 2.406 -0.445 -1.111
- Georgia_Satsurblia.SG 0.425 3.322 0.232
- Russia_DevilsCave_N.SG 0.869 0.220 -0.190
- Papuan.DG 0.651 0.074 0.025
- Switzerland_Bichon.SG 1.525 -0.707 0.272
- Morocco_Iberomaurusian -0.590 -0.837 0.171
- Turkey_Epipaleolithic -0.211 -0.583 3.346
- ONG.SG 0.785 0.196 0.150
- A:
- scale 341.023 504.091 779.381
- Turkey_N -0.100 -0.642 1.115
- CHG -0.043 1.221 -0.690
- EHG 1.424 -0.927 -0.697
- Israel_Natufian -1.401 -1.113 -1.340
- full rank
- f4info:
- f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 14.188 taildiff: 0.164600707
- B:
- scale 462.675 360.150 195.687 231.037
- Russia_Ust_Ishim.DG 0.412 0.271 0.473 -0.445
- China_Tianyuan 0.349 0.254 0.955 -0.577
- Goyet_Neanderthal.SG 0.151 0.061 0.176 0.125
- Russia_Sunghir3.SG 0.495 -0.152 0.834 -0.766
- Russia_Kostenki14.SG -0.010 -0.563 0.604 -0.971
- Russia_MA1_HG.SG -0.297 0.287 2.526 -1.424
- Georgia_Satsurblia.SG -1.506 3.210 -0.738 -2.013
- Russia_DevilsCave_N.SG -0.255 0.334 0.731 -0.833
- Papuan.DG -0.231 -0.049 0.453 -0.735
- Switzerland_Bichon.SG 0.800 -0.377 1.624 -0.997
- Morocco_Iberomaurusian 1.083 -0.380 -0.027 1.118
- Turkey_Epipaleolithic 2.853 -1.311 -0.425 -0.737
- ONG.SG -0.119 0.124 0.539 -0.907
- A:
- scale 2.000 2.000 2.000 2.000
- Turkey_N 2.000 0.000 0.000 0.000
- CHG 0.000 2.000 0.000 0.000
- EHG 0.000 0.000 2.000 0.000
- Israel_Natufian 0.000 0.000 0.000 2.000
- best coefficients: 0.412 0.384 0.122 0.082
- totmean: 0.412 0.384 0.122 0.082
- boot mean: 0.412 0.384 0.122 0.082
- std. errors: 0.066 0.040 0.037 0.049
- error covariance (* 1,000,000)
- 4363 -717 -1116 -2529
- -717 1577 -638 -221
- -1116 -638 1364 390
- -2529 -221 390 2360
- summ: ponticgreek1 4 0.164601 0.412 0.384 0.122 0.082 4363 -717 -1116 -2529 1577 ...
- -638 -221 1364 390 2360
- fixed pat wt dof chisq tail prob
- 0000 0 10 14.188 0.164601 0.412 0.384 0.122 0.082
- 0001 1 11 17.022 0.107238 0.501 0.392 0.108 0.000
- 0010 1 11 25.229 0.00843953 0.496 0.443 0.000 0.061
- 0100 1 11 119.143 2.69564e-20 0.544 0.000 0.287 0.169
- 1000 1 11 49.617 7.33283e-07 0.000 0.455 0.227 0.318
- 0011 2 12 26.289 0.00976551 0.558 0.442 0.000 0.000
- 0101 2 12 127.464 1.99042e-21 0.742 0.000 0.258 0.000
- 0110 2 12 188.883 0 0.927 0.000 0.000 0.073
- 1001 2 12 132.401 2.03283e-22 0.000 0.711 0.289 0.000
- 1010 2 12 83.989 7.11909e-13 0.000 0.625 0.000 0.375
- 1100 2 12 162.280 1.80157e-28 0.000 0.000 0.440 0.560
- 0111 3 13 190.419 0 1.000 0.000 0.000 0.000
- 1011 3 13 169.505 2.32732e-29 0.000 1.000 0.000 0.000
- 1101 3 13 458.812 0 0.000 0.000 1.000 0.000
- 1110 3 13 283.169 0 0.000 0.000 0.000 1.000
- best pat: 0000 0.164601 - -
- best pat: 0001 0.107238 chi(nested): 2.834 p-value for nested model: 0.0922942
- best pat: 0011 0.00976551 chi(nested): 9.268 p-value for nested model: 0.00233208
- best pat: 1011 2.32732e-29 chi(nested): 143.215 p-value for nested model: 5.27375e-33
- coeffs: 0.412 0.384 0.122 0.082
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Turkey_N Russia_Ust_Ishim.DG 0.000890 1.669119
- details: CHG Russia_Ust_Ishim.DG 0.000753 1.075383
- details: EHG Russia_Ust_Ishim.DG 0.002419 3.527853
- details: Israel_Natufian Russia_Ust_Ishim.DG -0.001925 -2.621746
- dscore: Russia_Ust_Ishim.DG f4: 0.000792 Z: 1.403877
- details: Turkey_N China_Tianyuan 0.000755 1.179534
- details: CHG China_Tianyuan 0.000705 0.898513
- details: EHG China_Tianyuan 0.004882 6.713830
- details: Israel_Natufian China_Tianyuan -0.002497 -2.775504
- dscore: China_Tianyuan f4: 0.000970 Z: 1.487085
- details: Turkey_N Goyet_Neanderthal.SG 0.000327 0.692935
- details: CHG Goyet_Neanderthal.SG 0.000169 0.304631
- details: EHG Goyet_Neanderthal.SG 0.000899 1.686416
- details: Israel_Natufian Goyet_Neanderthal.SG 0.000541 0.802369
- dscore: Goyet_Neanderthal.SG f4: 0.000354 Z: 0.738903
- details: Turkey_N Russia_Sunghir3.SG 0.001070 1.752572
- details: CHG Russia_Sunghir3.SG -0.000422 -0.553101
- details: EHG Russia_Sunghir3.SG 0.004261 6.031141
- details: Israel_Natufian Russia_Sunghir3.SG -0.003315 -3.784856
- dscore: Russia_Sunghir3.SG f4: 0.000525 Z: 0.839614
- details: Turkey_N Russia_Kostenki14.SG -0.000022 -0.030358
- details: CHG Russia_Kostenki14.SG -0.001563 -1.816395
- details: EHG Russia_Kostenki14.SG 0.003088 3.628986
- details: Israel_Natufian Russia_Kostenki14.SG -0.004203 -4.512542
- dscore: Russia_Kostenki14.SG f4: -0.000579 Z: -0.784902
- details: Turkey_N Russia_MA1_HG.SG -0.000643 -0.979842
- details: CHG Russia_MA1_HG.SG 0.000797 0.976324
- details: EHG Russia_MA1_HG.SG 0.012907 15.640948
- details: Israel_Natufian Russia_MA1_HG.SG -0.006164 -6.651253
- dscore: Russia_MA1_HG.SG f4: 0.001103 Z: 1.644321
- details: Turkey_N Georgia_Satsurblia.SG -0.003256 -4.880100
- details: CHG Georgia_Satsurblia.SG 0.008912 9.840102
- details: EHG Georgia_Satsurblia.SG -0.003769 -4.885953
- details: Israel_Natufian Georgia_Satsurblia.SG -0.008714 -9.013035
- dscore: Georgia_Satsurblia.SG f4: 0.000904 Z: 1.288493
- details: Turkey_N Russia_DevilsCave_N.SG -0.000550 -1.090591
- details: CHG Russia_DevilsCave_N.SG 0.000929 1.441187
- details: EHG Russia_DevilsCave_N.SG 0.003735 6.380813
- details: Israel_Natufian Russia_DevilsCave_N.SG -0.003606 -4.981612
- dscore: Russia_DevilsCave_N.SG f4: 0.000287 Z: 0.549506
- details: Turkey_N Papuan.DG -0.000499 -1.116256
- details: CHG Papuan.DG -0.000135 -0.245001
- details: EHG Papuan.DG 0.002317 4.343163
- details: Israel_Natufian Papuan.DG -0.003179 -5.023956
- dscore: Papuan.DG f4: -0.000238 Z: -0.528567
- details: Turkey_N Switzerland_Bichon.SG 0.001728 2.646257
- details: CHG Switzerland_Bichon.SG -0.001047 -1.242281
- details: EHG Switzerland_Bichon.SG 0.008300 10.371564
- details: Israel_Natufian Switzerland_Bichon.SG -0.004313 -4.575815
- dscore: Switzerland_Bichon.SG f4: 0.000965 Z: 1.403305
- details: Turkey_N Morocco_Iberomaurusian 0.002341 5.185096
- details: CHG Morocco_Iberomaurusian -0.001055 -1.828841
- details: EHG Morocco_Iberomaurusian -0.000136 -0.251226
- details: Israel_Natufian Morocco_Iberomaurusian 0.004841 7.353496
- dscore: Morocco_Iberomaurusian f4: 0.000941 Z: 1.990055
- details: Turkey_N Turkey_Epipaleolithic 0.006166 9.353981
- details: CHG Turkey_Epipaleolithic -0.003639 -4.446626
- details: EHG Turkey_Epipaleolithic -0.002169 -2.806951
- details: Israel_Natufian Turkey_Epipaleolithic -0.003188 -3.299393
- dscore: Turkey_Epipaleolithic f4: 0.000619 Z: 0.909939
- details: Turkey_N ONG.SG -0.000258 -0.553200
- details: CHG ONG.SG 0.000344 0.593322
- details: EHG ONG.SG 0.002752 5.062345
- details: Israel_Natufian ONG.SG -0.003925 -5.775500
- dscore: ONG.SG f4: 0.000038 Z: 0.079243
- gendstat: Mbuti.DG Russia_Ust_Ishim.DG 1.404
- gendstat: Mbuti.DG China_Tianyuan 1.487
- gendstat: Mbuti.DG Goyet_Neanderthal.SG 0.739
- gendstat: Mbuti.DG Russia_Sunghir3.SG 0.840
- gendstat: Mbuti.DG Russia_Kostenki14.SG -0.785
- gendstat: Mbuti.DG Russia_MA1_HG.SG 1.644
- gendstat: Mbuti.DG Georgia_Satsurblia.SG 1.288
- gendstat: Mbuti.DG Russia_DevilsCave_N.SG 0.550
- gendstat: Mbuti.DG Papuan.DG -0.529
- gendstat: Mbuti.DG Switzerland_Bichon.SG 1.403
- gendstat: Mbuti.DG Morocco_Iberomaurusian 1.990
- gendstat: Mbuti.DG Turkey_Epipaleolithic 0.910
- gendstat: Mbuti.DG ONG.SG 0.079
- gendstat: Russia_Ust_Ishim.DG China_Tianyuan 0.251
- gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG -0.624
- gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG -0.394
- gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG -1.802
- gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG 0.415
- gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG 0.148
- gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG -0.792
- gendstat: Russia_Ust_Ishim.DG Papuan.DG -1.758
- gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG 0.231
- gendstat: Russia_Ust_Ishim.DG Morocco_Iberomaurusian 0.252
- gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic -0.235
- gendstat: Russia_Ust_Ishim.DG ONG.SG -1.311
- gendstat: China_Tianyuan Goyet_Neanderthal.SG -0.821
- gendstat: China_Tianyuan Russia_Sunghir3.SG -0.607
- gendstat: China_Tianyuan Russia_Kostenki14.SG -1.759
- gendstat: China_Tianyuan Russia_MA1_HG.SG 0.174
- gendstat: China_Tianyuan Georgia_Satsurblia.SG -0.080
- gendstat: China_Tianyuan Russia_DevilsCave_N.SG -1.085
- gendstat: China_Tianyuan Papuan.DG -1.977
- gendstat: China_Tianyuan Switzerland_Bichon.SG -0.007
- gendstat: China_Tianyuan Morocco_Iberomaurusian -0.045
- gendstat: China_Tianyuan Turkey_Epipaleolithic -0.431
- gendstat: China_Tianyuan ONG.SG -1.539
- gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG 0.229
- gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG -1.075
- gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG 0.996
- gendstat: Goyet_Neanderthal.SG Georgia_Satsurblia.SG 0.684
- gendstat: Goyet_Neanderthal.SG Russia_DevilsCave_N.SG -0.104
- gendstat: Goyet_Neanderthal.SG Papuan.DG -0.957
- gendstat: Goyet_Neanderthal.SG Switzerland_Bichon.SG 0.799
- gendstat: Goyet_Neanderthal.SG Morocco_Iberomaurusian 0.944
- gendstat: Goyet_Neanderthal.SG Turkey_Epipaleolithic 0.346
- gendstat: Goyet_Neanderthal.SG ONG.SG -0.515
- gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG -1.391
- gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG 0.768
- gendstat: Russia_Sunghir3.SG Georgia_Satsurblia.SG 0.458
- gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG -0.366
- gendstat: Russia_Sunghir3.SG Papuan.DG -1.236
- gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG 0.612
- gendstat: Russia_Sunghir3.SG Morocco_Iberomaurusian 0.634
- gendstat: Russia_Sunghir3.SG Turkey_Epipaleolithic 0.128
- gendstat: Russia_Sunghir3.SG ONG.SG -0.750
- gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG 1.882
- gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG 1.674
- gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG 1.074
- gendstat: Russia_Kostenki14.SG Papuan.DG 0.464
- gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG 1.662
- gendstat: Russia_Kostenki14.SG Morocco_Iberomaurusian 2.043
- gendstat: Russia_Kostenki14.SG Turkey_Epipaleolithic 1.448
- gendstat: Russia_Kostenki14.SG ONG.SG 0.814
- gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG -0.233
- gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG -1.195
- gendstat: Russia_MA1_HG.SG Papuan.DG -2.035
- gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG -0.187
- gendstat: Russia_MA1_HG.SG Morocco_Iberomaurusian -0.232
- gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic -0.584
- gendstat: Russia_MA1_HG.SG ONG.SG -1.593
- gendstat: Georgia_Satsurblia.SG Russia_DevilsCave_N.SG -0.820
- gendstat: Georgia_Satsurblia.SG Papuan.DG -1.630
- gendstat: Georgia_Satsurblia.SG Switzerland_Bichon.SG 0.072
- gendstat: Georgia_Satsurblia.SG Morocco_Iberomaurusian 0.051
- gendstat: Georgia_Satsurblia.SG Turkey_Epipaleolithic -0.342
- gendstat: Georgia_Satsurblia.SG ONG.SG -1.259
- gendstat: Russia_DevilsCave_N.SG Papuan.DG -1.064
- gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG 0.972
- gendstat: Russia_DevilsCave_N.SG Morocco_Iberomaurusian 1.147
- gendstat: Russia_DevilsCave_N.SG Turkey_Epipaleolithic 0.448
- gendstat: Russia_DevilsCave_N.SG ONG.SG -0.518
- gendstat: Papuan.DG Switzerland_Bichon.SG 1.760
- gendstat: Papuan.DG Morocco_Iberomaurusian 2.271
- gendstat: Papuan.DG Turkey_Epipaleolithic 1.220
- gendstat: Papuan.DG ONG.SG 0.627
- gendstat: Switzerland_Bichon.SG Morocco_Iberomaurusian -0.034
- gendstat: Switzerland_Bichon.SG Turkey_Epipaleolithic -0.422
- gendstat: Switzerland_Bichon.SG ONG.SG -1.356
- gendstat: Morocco_Iberomaurusian Turkey_Epipaleolithic -0.472
- gendstat: Morocco_Iberomaurusian ONG.SG -1.698
- gendstat: Turkey_Epipaleolithic ONG.SG -0.808
- ##end of qpAdm: 21.879 seconds cpu 1.487 Mbytes in use
- ----------------------------------------------------------------------------------------------------------------------------
- qpAdm: parameter file: parqpadm.txt
- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- fstatsname: fstatsa.txt
- popleft: left.txt
- popright: right.txt
- details: YES
- ## qpAdm version: 1520
- seed: 1201719362
- *** recommended that inbreed be explicitly set ***
- inbreed set NO
- left pops:
- ponticgreek2
- Turkey_N
- CHG
- EHG
- Israel_Natufian
- right pops:
- Mbuti.DG
- Russia_Ust_Ishim.DG
- China_Tianyuan
- Goyet_Neanderthal.SG
- Russia_Sunghir3.SG
- Russia_Kostenki14.SG
- Russia_MA1_HG.SG
- Georgia_Satsurblia.SG
- Russia_DevilsCave_N.SG
- Papuan.DG
- Switzerland_Bichon.SG
- Morocco_Iberomaurusian
- Turkey_Epipaleolithic
- ONG.SG
- codimension 1
- f4info:
- f4rank: 3 dof: 10 chisq: 10.535 tail: 0.394896713 dofdiff: 12 chisqdiff: -10.535 taildiff: 1
- B:
- scale 1.000 1.000 1.000
- Russia_Ust_Ishim.DG 0.486 0.051 0.252
- China_Tianyuan 0.865 -0.172 -0.043
- Goyet_Neanderthal.SG 0.040 -0.121 -0.109
- Russia_Sunghir3.SG 0.891 -0.266 0.402
- Russia_Kostenki14.SG 0.825 -0.312 0.387
- Russia_MA1_HG.SG 2.382 -0.654 -1.084
- Georgia_Satsurblia.SG 0.632 3.313 0.013
- Russia_DevilsCave_N.SG 0.885 0.152 -0.220
- Papuan.DG 0.659 0.035 -0.011
- Switzerland_Bichon.SG 1.480 -0.794 0.313
- Morocco_Iberomaurusian -0.650 -0.767 0.180
- Turkey_Epipaleolithic -0.134 -0.343 3.354
- ONG.SG 0.784 0.156 0.092
- A:
- scale 339.106 508.412 741.947
- Turkey_N -0.208 -0.548 0.973
- CHG -0.058 1.269 -0.918
- EHG 1.277 -1.051 -0.811
- Israel_Natufian -1.524 -0.993 -1.246
- full rank
- f4info:
- f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 10.535 taildiff: 0.394896713
- B:
- scale 520.553 343.866 213.293 209.358
- Russia_Ust_Ishim.DG 0.131 0.039 0.380 -0.537
- China_Tianyuan -0.291 -0.209 0.761 -0.798
- Goyet_Neanderthal.SG -0.091 -0.114 0.085 0.008
- Russia_Sunghir3.SG 0.234 -0.358 0.777 -0.824
- Russia_Kostenki14.SG 0.710 -0.061 0.954 -0.590
- Russia_MA1_HG.SG -1.040 -0.192 2.464 -1.574
- Georgia_Satsurblia.SG -1.798 2.997 -0.846 -1.866
- Russia_DevilsCave_N.SG -0.584 0.122 0.675 -0.875
- Papuan.DG -0.359 -0.112 0.454 -0.705
- Switzerland_Bichon.SG 0.473 -0.641 1.596 -1.074
- Morocco_Iberomaurusian 0.861 -0.599 -0.175 0.870
- Turkey_Epipaleolithic 2.498 -1.722 -0.754 -0.954
- ONG.SG -0.585 -0.179 0.402 -1.003
- A:
- scale 2.000 2.000 2.000 2.000
- Turkey_N 2.000 0.000 0.000 0.000
- CHG 0.000 2.000 0.000 0.000
- EHG 0.000 0.000 2.000 0.000
- Israel_Natufian 0.000 0.000 0.000 2.000
- best coefficients: 0.484 0.347 0.135 0.034
- totmean: 0.484 0.347 0.135 0.034
- boot mean: 0.483 0.348 0.135 0.034
- std. errors: 0.074 0.037 0.036 0.052
- error covariance (* 1,000,000)
- 5415 -903 -1280 -3232
- -903 1385 -495 13
- -1280 -495 1263 512
- -3232 13 512 2708
- summ: ponticgreek2 4 0.394897 0.483 0.348 0.135 0.034 5415 -903 -1280 -3232 1385 ...
- -495 13 1263 512 2708
- fixed pat wt dof chisq tail prob
- 0000 0 10 10.535 0.394897 0.484 0.347 0.135 0.034
- 0001 1 11 10.976 0.44525 0.525 0.347 0.128 0.000
- 0010 1 11 25.054 0.00895367 0.592 0.409 0.000 -0.001
- 0100 1 11 103.918 2.98295e-17 0.741 0.000 0.251 0.007
- 1000 1 11 52.743 1.9988e-07 0.000 0.438 0.246 0.316
- 0011 2 12 25.123 0.0142528 0.592 0.408 0.000 0.000
- 0101 2 12 103.632 1.07854e-16 0.757 0.000 0.243 0.000
- 0110 2 12 162.776 1.42671e-28 1.133 0.000 0.000 -0.133 infeasible
- 1001 2 12 144.976 5.90896e-25 0.000 0.678 0.322 0.000
- 1010 2 12 97.049 2.10326e-15 0.000 0.620 0.000 0.380
- 1100 2 12 175.981 0 0.000 0.000 0.446 0.554
- 0111 3 13 167.360 6.34607e-29 1.000 0.000 0.000 0.000
- 1011 3 13 193.560 0 0.000 1.000 0.000 0.000
- 1101 3 13 493.782 0 0.000 0.000 1.000 0.000
- 1110 3 13 320.577 0 0.000 0.000 0.000 1.000
- best pat: 0000 0.394897 - -
- best pat: 0001 0.44525 chi(nested): 0.442 p-value for nested model: 0.506355
- best pat: 0011 0.0142528 chi(nested): 14.146 p-value for nested model: 0.000169136
- best pat: 0111 6.34607e-29 chi(nested): 142.238 p-value for nested model: 8.62727e-33
- coeffs: 0.484 0.347 0.135 0.034
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Turkey_N Russia_Ust_Ishim.DG 0.000251 0.485618
- details: CHG Russia_Ust_Ishim.DG 0.000115 0.171008
- details: EHG Russia_Ust_Ishim.DG 0.001780 2.772709
- details: Israel_Natufian Russia_Ust_Ishim.DG -0.002564 -3.620570
- dscore: Russia_Ust_Ishim.DG f4: 0.000315 Z: 0.593640
- details: Turkey_N China_Tianyuan -0.000559 -0.923358
- details: CHG China_Tianyuan -0.000609 -0.789015
- details: EHG China_Tianyuan 0.003568 5.055368
- details: Israel_Natufian China_Tianyuan -0.003812 -4.430586
- dscore: China_Tianyuan f4: -0.000129 Z: -0.208755
- details: Turkey_N Goyet_Neanderthal.SG -0.000174 -0.378083
- details: CHG Goyet_Neanderthal.SG -0.000332 -0.617444
- details: EHG Goyet_Neanderthal.SG 0.000398 0.775430
- details: Israel_Natufian Goyet_Neanderthal.SG 0.000040 0.061577
- dscore: Goyet_Neanderthal.SG f4: -0.000144 Z: -0.315201
- details: Turkey_N Russia_Sunghir3.SG 0.000450 0.771621
- details: CHG Russia_Sunghir3.SG -0.001042 -1.391489
- details: EHG Russia_Sunghir3.SG 0.003641 5.228201
- details: Israel_Natufian Russia_Sunghir3.SG -0.003935 -4.840493
- dscore: Russia_Sunghir3.SG f4: 0.000214 Z: 0.359925
- details: Turkey_N Russia_Kostenki14.SG 0.001365 2.301715
- details: CHG Russia_Kostenki14.SG -0.000176 -0.234898
- details: EHG Russia_Kostenki14.SG 0.004474 5.958462
- details: Israel_Natufian Russia_Kostenki14.SG -0.002817 -3.356825
- dscore: Russia_Kostenki14.SG f4: 0.001108 Z: 1.831042
- details: Turkey_N Russia_MA1_HG.SG -0.001998 -3.052544
- details: CHG Russia_MA1_HG.SG -0.000558 -0.675923
- details: EHG Russia_MA1_HG.SG 0.011551 14.525366
- details: Israel_Natufian Russia_MA1_HG.SG -0.007519 -8.317789
- dscore: Russia_MA1_HG.SG f4: 0.000145 Z: 0.219159
- details: Turkey_N Georgia_Satsurblia.SG -0.003454 -5.450095
- details: CHG Georgia_Satsurblia.SG 0.008714 10.078352
- details: EHG Georgia_Satsurblia.SG -0.003967 -5.477858
- details: Israel_Natufian Georgia_Satsurblia.SG -0.008912 -9.751238
- dscore: Georgia_Satsurblia.SG f4: 0.000518 Z: 0.798962
- details: Turkey_N Russia_DevilsCave_N.SG -0.001123 -2.392532
- details: CHG Russia_DevilsCave_N.SG 0.000356 0.582244
- details: EHG Russia_DevilsCave_N.SG 0.003163 5.531893
- details: Israel_Natufian Russia_DevilsCave_N.SG -0.004179 -6.182822
- dscore: Russia_DevilsCave_N.SG f4: -0.000134 Z: -0.278189
- details: Turkey_N Papuan.DG -0.000689 -1.540401
- details: CHG Papuan.DG -0.000325 -0.567816
- details: EHG Papuan.DG 0.002127 4.075277
- details: Israel_Natufian Papuan.DG -0.003369 -5.631499
- dscore: Papuan.DG f4: -0.000273 Z: -0.605864
- details: Turkey_N Switzerland_Bichon.SG 0.000910 1.471913
- details: CHG Switzerland_Bichon.SG -0.001865 -2.385305
- details: EHG Switzerland_Bichon.SG 0.007482 9.925638
- details: Israel_Natufian Switzerland_Bichon.SG -0.005132 -5.676693
- dscore: Switzerland_Bichon.SG f4: 0.000629 Z: 1.002365
- details: Turkey_N Morocco_Iberomaurusian 0.001654 3.812726
- details: CHG Morocco_Iberomaurusian -0.001742 -3.221620
- details: EHG Morocco_Iberomaurusian -0.000822 -1.601514
- details: Israel_Natufian Morocco_Iberomaurusian 0.004154 6.400619
- dscore: Morocco_Iberomaurusian f4: 0.000225 Z: 0.511857
- details: Turkey_N Turkey_Epipaleolithic 0.004798 7.097120
- details: CHG Turkey_Epipaleolithic -0.005006 -5.898606
- details: EHG Turkey_Epipaleolithic -0.003537 -4.449784
- details: Israel_Natufian Turkey_Epipaleolithic -0.004556 -4.625699
- dscore: Turkey_Epipaleolithic f4: -0.000050 Z: -0.072416
- details: Turkey_N ONG.SG -0.001124 -2.522795
- details: CHG ONG.SG -0.000521 -0.918878
- details: EHG ONG.SG 0.001886 3.530315
- details: Israel_Natufian ONG.SG -0.004791 -7.323029
- dscore: ONG.SG f4: -0.000632 Z: -1.400353
- gendstat: Mbuti.DG Russia_Ust_Ishim.DG 0.594
- gendstat: Mbuti.DG China_Tianyuan -0.209
- gendstat: Mbuti.DG Goyet_Neanderthal.SG -0.315
- gendstat: Mbuti.DG Russia_Sunghir3.SG 0.360
- gendstat: Mbuti.DG Russia_Kostenki14.SG 1.831
- gendstat: Mbuti.DG Russia_MA1_HG.SG 0.219
- gendstat: Mbuti.DG Georgia_Satsurblia.SG 0.799
- gendstat: Mbuti.DG Russia_DevilsCave_N.SG -0.278
- gendstat: Mbuti.DG Papuan.DG -0.606
- gendstat: Mbuti.DG Switzerland_Bichon.SG 1.002
- gendstat: Mbuti.DG Morocco_Iberomaurusian 0.512
- gendstat: Mbuti.DG Turkey_Epipaleolithic -0.072
- gendstat: Mbuti.DG ONG.SG -1.400
- gendstat: Russia_Ust_Ishim.DG China_Tianyuan -0.656
- gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG -0.699
- gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG -0.159
- gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 1.225
- gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG -0.244
- gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG 0.268
- gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG -0.778
- gendstat: Russia_Ust_Ishim.DG Papuan.DG -1.050
- gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG 0.467
- gendstat: Russia_Ust_Ishim.DG Morocco_Iberomaurusian -0.154
- gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic -0.473
- gendstat: Russia_Ust_Ishim.DG ONG.SG -1.768
- gendstat: China_Tianyuan Goyet_Neanderthal.SG -0.020
- gendstat: China_Tianyuan Russia_Sunghir3.SG 0.461
- gendstat: China_Tianyuan Russia_Kostenki14.SG 1.648
- gendstat: China_Tianyuan Russia_MA1_HG.SG 0.350
- gendstat: China_Tianyuan Georgia_Satsurblia.SG 0.806
- gendstat: China_Tianyuan Russia_DevilsCave_N.SG -0.008
- gendstat: China_Tianyuan Papuan.DG -0.235
- gendstat: China_Tianyuan Switzerland_Bichon.SG 1.037
- gendstat: China_Tianyuan Morocco_Iberomaurusian 0.556
- gendstat: China_Tianyuan Turkey_Epipaleolithic 0.097
- gendstat: China_Tianyuan ONG.SG -0.816
- gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG 0.502
- gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG 1.681
- gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG 0.374
- gendstat: Goyet_Neanderthal.SG Georgia_Satsurblia.SG 0.854
- gendstat: Goyet_Neanderthal.SG Russia_DevilsCave_N.SG 0.016
- gendstat: Goyet_Neanderthal.SG Papuan.DG -0.214
- gendstat: Goyet_Neanderthal.SG Switzerland_Bichon.SG 1.004
- gendstat: Goyet_Neanderthal.SG Morocco_Iberomaurusian 0.621
- gendstat: Goyet_Neanderthal.SG Turkey_Epipaleolithic 0.116
- gendstat: Goyet_Neanderthal.SG ONG.SG -0.815
- gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG 1.339
- gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG -0.090
- gendstat: Russia_Sunghir3.SG Georgia_Satsurblia.SG 0.390
- gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG -0.552
- gendstat: Russia_Sunghir3.SG Papuan.DG -0.805
- gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG 0.604
- gendstat: Russia_Sunghir3.SG Morocco_Iberomaurusian 0.018
- gendstat: Russia_Sunghir3.SG Turkey_Epipaleolithic -0.338
- gendstat: Russia_Sunghir3.SG ONG.SG -1.411
- gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -1.290
- gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG -0.738
- gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG -1.984
- gendstat: Russia_Kostenki14.SG Papuan.DG -2.280
- gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG -0.709
- gendstat: Russia_Kostenki14.SG Morocco_Iberomaurusian -1.374
- gendstat: Russia_Kostenki14.SG Turkey_Epipaleolithic -1.474
- gendstat: Russia_Kostenki14.SG ONG.SG -2.828
- gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 0.444
- gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG -0.400
- gendstat: Russia_MA1_HG.SG Papuan.DG -0.617
- gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG 0.652
- gendstat: Russia_MA1_HG.SG Morocco_Iberomaurusian 0.116
- gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic -0.233
- gendstat: Russia_MA1_HG.SG ONG.SG -1.166
- gendstat: Georgia_Satsurblia.SG Russia_DevilsCave_N.SG -0.924
- gendstat: Georgia_Satsurblia.SG Papuan.DG -1.120
- gendstat: Georgia_Satsurblia.SG Switzerland_Bichon.SG 0.142
- gendstat: Georgia_Satsurblia.SG Morocco_Iberomaurusian -0.429
- gendstat: Georgia_Satsurblia.SG Turkey_Epipaleolithic -0.670
- gendstat: Georgia_Satsurblia.SG ONG.SG -1.614
- gendstat: Russia_DevilsCave_N.SG Papuan.DG -0.289
- gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG 1.165
- gendstat: Russia_DevilsCave_N.SG Morocco_Iberomaurusian 0.656
- gendstat: Russia_DevilsCave_N.SG Turkey_Epipaleolithic 0.115
- gendstat: Russia_DevilsCave_N.SG ONG.SG -1.084
- gendstat: Papuan.DG Switzerland_Bichon.SG 1.396
- gendstat: Papuan.DG Morocco_Iberomaurusian 0.981
- gendstat: Papuan.DG Turkey_Epipaleolithic 0.295
- gendstat: Papuan.DG ONG.SG -0.823
- gendstat: Switzerland_Bichon.SG Morocco_Iberomaurusian -0.626
- gendstat: Switzerland_Bichon.SG Turkey_Epipaleolithic -0.874
- gendstat: Switzerland_Bichon.SG ONG.SG -2.008
- gendstat: Morocco_Iberomaurusian Turkey_Epipaleolithic -0.381
- gendstat: Morocco_Iberomaurusian ONG.SG -1.649
- gendstat: Turkey_Epipaleolithic ONG.SG -0.805
- ##end of qpAdm: 21.489 seconds cpu 1.487 Mbytes in use
- ----------------------------------------------------------------------------------------------------------------------------
- qpAdm: parameter file: parqpadm.txt
- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- fstatsname: fstatsa.txt
- popleft: left.txt
- popright: right.txt
- details: YES
- ## qpAdm version: 1520
- seed: 1154524461
- *** recommended that inbreed be explicitly set ***
- inbreed set NO
- left pops:
- Cretan1.DG
- Greece_Peloponnese_N
- CHG
- EHG
- Israel_Natufian
- right pops:
- Mbuti.DG
- Russia_Ust_Ishim.DG
- China_Tianyuan
- Goyet_Neanderthal.SG
- Russia_Sunghir3.SG
- Russia_Kostenki14.SG
- Russia_MA1_HG.SG
- Georgia_Satsurblia.SG
- Russia_DevilsCave_N.SG
- Papuan.DG
- Switzerland_Bichon.SG
- Turkey_Epipaleolithic
- ONG.SG
- codimension 1
- f4info:
- f4rank: 3 dof: 9 chisq: 8.697 tail: 0.465703317 dofdiff: 11 chisqdiff: -8.697 taildiff: 1
- B:
- scale 1.000 1.000 1.000
- Russia_Ust_Ishim.DG 0.493 0.076 0.103
- China_Tianyuan 0.853 -0.117 -0.100
- Goyet_Neanderthal.SG 0.051 -0.073 -0.202
- Russia_Sunghir3.SG 0.864 -0.314 0.305
- Russia_Kostenki14.SG 0.848 -0.305 0.150
- Russia_MA1_HG.SG 2.342 -0.283 -1.487
- Georgia_Satsurblia.SG 0.396 3.193 0.479
- Russia_DevilsCave_N.SG 0.835 0.171 -0.103
- Papuan.DG 0.630 0.010 0.045
- Switzerland_Bichon.SG 1.499 -0.703 -0.257
- Turkey_Epipaleolithic -0.080 -0.985 3.047
- ONG.SG 0.754 0.112 0.141
- A:
- scale 325.867 510.292 787.368
- Greece_Peloponnese_N -0.118 -0.105 0.854
- CHG -0.066 1.885 -0.322
- EHG 1.283 -0.349 -0.951
- Israel_Natufian -1.528 -0.560 -1.504
- full rank
- f4info:
- f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 8.697 taildiff: 0.465703317
- B:
- scale 770.879 268.828 222.124 216.041
- Russia_Ust_Ishim.DG -0.235 -0.056 0.324 -0.623
- China_Tianyuan -0.226 -0.106 0.840 -0.777
- Goyet_Neanderthal.SG -0.032 0.003 0.165 0.083
- Russia_Sunghir3.SG 0.000 -0.426 0.688 -0.968
- Russia_Kostenki14.SG 0.006 -0.334 0.757 -0.839
- Russia_MA1_HG.SG -1.516 -0.140 2.574 -1.616
- Georgia_Satsurblia.SG -0.249 3.057 -0.291 -1.352
- Russia_DevilsCave_N.SG -0.290 0.157 0.753 -0.854
- Papuan.DG -0.174 -0.030 0.520 -0.682
- Switzerland_Bichon.SG -0.892 -0.871 1.357 -1.405
- Turkey_Epipaleolithic 2.900 -1.243 -0.700 -0.901
- ONG.SG -0.465 -0.058 0.487 -0.969
- A:
- scale 2.000 2.000 2.000 2.000
- Greece_Peloponnese_N 2.000 0.000 0.000 0.000
- CHG 0.000 2.000 0.000 0.000
- EHG 0.000 0.000 2.000 0.000
- Israel_Natufian 0.000 0.000 0.000 2.000
- best coefficients: 0.530 0.111 0.220 0.139
- totmean: 0.530 0.111 0.220 0.139
- boot mean: 0.530 0.111 0.220 0.139
- std. errors: 0.062 0.027 0.027 0.051
- error covariance (* 1,000,000)
- 3817 -575 -627 -2616
- -575 727 -122 -29
- -627 -122 714 35
- -2616 -29 35 2610
- summ: Cretan1.DG 4 0.465703 0.530 0.111 0.220 0.139 3817 -575 -627 -2616 727 ...
- -122 -29 714 35 2610
- fixed pat wt dof chisq tail prob
- 0000 0 9 8.697 0.465703 0.530 0.111 0.220 0.139
- 0001 1 10 16.265 0.0922968 0.664 0.114 0.221 0.000
- 0010 1 10 185.085 0 4.498 0.383 0.000 -3.881 infeasible
- 0100 1 10 25.780 0.00404793 0.606 0.000 0.237 0.157
- 1000 1 10 62.002 1.51182e-09 0.000 0.162 0.277 0.561
- 0011 2 11 83.621 2.93063e-13 0.849 0.151 0.000 0.000
- 0101 2 11 34.850 0.000262319 0.761 0.000 0.239 0.000
- 0110 2 11 104.048 2.81092e-17 0.821 0.000 0.000 0.179
- 1001 2 11 300.063 0 0.000 0.514 0.486 0.000
- 1010 2 11 129.748 1.95798e-22 0.000 0.210 0.000 0.790
- 1100 2 11 80.784 1.04057e-12 0.000 0.000 0.309 0.691
- 0111 3 12 109.270 8.34495e-18 1.000 0.000 0.000 0.000
- 1011 3 12 401.063 0 0.000 1.000 0.000 0.000
- 1101 3 12 563.831 0 0.000 0.000 1.000 0.000
- 1110 3 12 147.682 1.67335e-25 0.000 0.000 0.000 1.000
- best pat: 0000 0.465703 - -
- best pat: 0100 0.00404793 chi(nested): 17.083 p-value for nested model: 3.57847e-05
- best pat: 0101 0.000262319 chi(nested): 9.070 p-value for nested model: 0.00259807
- best pat: 0111 8.34495e-18 chi(nested): 74.420 p-value for nested model: 6.31605e-18
- coeffs: 0.530 0.111 0.220 0.139
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Greece_Peloponnese_N Russia_Ust_Ishim.DG -0.000305 -0.670557
- details: CHG Russia_Ust_Ishim.DG -0.000207 -0.353966
- details: EHG Russia_Ust_Ishim.DG 0.001459 2.577309
- details: Israel_Natufian Russia_Ust_Ishim.DG -0.002885 -4.287332
- dscore: Russia_Ust_Ishim.DG f4: -0.000264 Z: -0.612419
- details: Greece_Peloponnese_N China_Tianyuan -0.000293 -0.636706
- details: CHG China_Tianyuan -0.000396 -0.624008
- details: EHG China_Tianyuan 0.003781 6.524732
- details: Israel_Natufian China_Tianyuan -0.003598 -4.849197
- dscore: China_Tianyuan f4: 0.000132 Z: 0.302795
- details: Greece_Peloponnese_N Goyet_Neanderthal.SG -0.000042 -0.133668
- details: CHG Goyet_Neanderthal.SG 0.000013 0.030759
- details: EHG Goyet_Neanderthal.SG 0.000742 1.891318
- details: Israel_Natufian Goyet_Neanderthal.SG 0.000384 0.673177
- dscore: Goyet_Neanderthal.SG f4: 0.000195 Z: 0.642046
- details: Greece_Peloponnese_N Russia_Sunghir3.SG 0.000000 0.000658
- details: CHG Russia_Sunghir3.SG -0.001585 -2.583754
- details: EHG Russia_Sunghir3.SG 0.003098 5.159572
- details: Israel_Natufian Russia_Sunghir3.SG -0.004478 -5.890937
- dscore: Russia_Sunghir3.SG f4: -0.000117 Z: -0.258349
- details: Greece_Peloponnese_N Russia_Kostenki14.SG 0.000007 0.015349
- details: CHG Russia_Kostenki14.SG -0.001241 -1.844253
- details: EHG Russia_Kostenki14.SG 0.003409 5.467040
- details: Israel_Natufian Russia_Kostenki14.SG -0.003882 -5.086273
- dscore: Russia_Kostenki14.SG f4: 0.000076 Z: 0.162129
- details: Greece_Peloponnese_N Russia_MA1_HG.SG -0.001966 -3.812209
- details: CHG Russia_MA1_HG.SG -0.000521 -0.734117
- details: EHG Russia_MA1_HG.SG 0.011589 18.075856
- details: Israel_Natufian Russia_MA1_HG.SG -0.007482 -9.043801
- dscore: Russia_MA1_HG.SG f4: 0.000407 Z: 0.826745
- details: Greece_Peloponnese_N Georgia_Satsurblia.SG -0.000322 -0.652258
- details: CHG Georgia_Satsurblia.SG 0.011370 15.095995
- details: EHG Georgia_Satsurblia.SG -0.001312 -2.157486
- details: Israel_Natufian Georgia_Satsurblia.SG -0.006256 -7.661777
- dscore: Georgia_Satsurblia.SG f4: -0.000059 Z: -0.126126
- details: Greece_Peloponnese_N Russia_DevilsCave_N.SG -0.000376 -0.928641
- details: CHG Russia_DevilsCave_N.SG 0.000582 1.090275
- details: EHG Russia_DevilsCave_N.SG 0.003389 7.118588
- details: Israel_Natufian Russia_DevilsCave_N.SG -0.003952 -6.203167
- dscore: Russia_DevilsCave_N.SG f4: 0.000062 Z: 0.161437
- details: Greece_Peloponnese_N Papuan.DG -0.000225 -0.593673
- details: CHG Papuan.DG -0.000112 -0.225330
- details: EHG Papuan.DG 0.002340 5.011710
- details: Israel_Natufian Papuan.DG -0.003156 -5.764404
- dscore: Papuan.DG f4: -0.000056 Z: -0.155317
- details: Greece_Peloponnese_N Switzerland_Bichon.SG -0.001157 -2.274819
- details: CHG Switzerland_Bichon.SG -0.003239 -4.771387
- details: EHG Switzerland_Bichon.SG 0.006108 9.405371
- details: Israel_Natufian Switzerland_Bichon.SG -0.006506 -8.368340
- dscore: Switzerland_Bichon.SG f4: -0.000535 Z: -1.104012
- details: Greece_Peloponnese_N Turkey_Epipaleolithic 0.003762 7.596276
- details: CHG Turkey_Epipaleolithic -0.004622 -6.869323
- details: EHG Turkey_Epipaleolithic -0.003152 -5.425489
- details: Israel_Natufian Turkey_Epipaleolithic -0.004171 -5.120816
- dscore: Turkey_Epipaleolithic f4: 0.000210 Z: 0.448982
- details: Greece_Peloponnese_N ONG.SG -0.000603 -1.648991
- details: CHG ONG.SG -0.000217 -0.433569
- details: EHG ONG.SG 0.002191 4.668047
- details: Israel_Natufian ONG.SG -0.004487 -7.508706
- dscore: ONG.SG f4: -0.000485 Z: -1.357705
- gendstat: Mbuti.DG Russia_Ust_Ishim.DG -0.612
- gendstat: Mbuti.DG China_Tianyuan 0.303
- gendstat: Mbuti.DG Goyet_Neanderthal.SG 0.642
- gendstat: Mbuti.DG Russia_Sunghir3.SG -0.258
- gendstat: Mbuti.DG Russia_Kostenki14.SG 0.162
- gendstat: Mbuti.DG Russia_MA1_HG.SG 0.827
- gendstat: Mbuti.DG Georgia_Satsurblia.SG -0.126
- gendstat: Mbuti.DG Russia_DevilsCave_N.SG 0.161
- gendstat: Mbuti.DG Papuan.DG -0.155
- gendstat: Mbuti.DG Switzerland_Bichon.SG -1.104
- gendstat: Mbuti.DG Turkey_Epipaleolithic 0.449
- gendstat: Mbuti.DG ONG.SG -1.358
- gendstat: Russia_Ust_Ishim.DG China_Tianyuan 0.786
- gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG 0.925
- gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG 0.283
- gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 0.652
- gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG 1.165
- gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG 0.396
- gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG 0.726
- gendstat: Russia_Ust_Ishim.DG Papuan.DG 0.481
- gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG -0.477
- gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic 0.859
- gendstat: Russia_Ust_Ishim.DG ONG.SG -0.501
- gendstat: China_Tianyuan Goyet_Neanderthal.SG 0.124
- gendstat: China_Tianyuan Russia_Sunghir3.SG -0.483
- gendstat: China_Tianyuan Russia_Kostenki14.SG -0.107
- gendstat: China_Tianyuan Russia_MA1_HG.SG 0.488
- gendstat: China_Tianyuan Georgia_Satsurblia.SG -0.363
- gendstat: China_Tianyuan Russia_DevilsCave_N.SG -0.169
- gendstat: China_Tianyuan Papuan.DG -0.445
- gendstat: China_Tianyuan Switzerland_Bichon.SG -1.256
- gendstat: China_Tianyuan Turkey_Epipaleolithic 0.141
- gendstat: China_Tianyuan ONG.SG -1.464
- gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG -0.619
- gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG -0.222
- gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG 0.373
- gendstat: Goyet_Neanderthal.SG Georgia_Satsurblia.SG -0.474
- gendstat: Goyet_Neanderthal.SG Russia_DevilsCave_N.SG -0.285
- gendstat: Goyet_Neanderthal.SG Papuan.DG -0.559
- gendstat: Goyet_Neanderthal.SG Switzerland_Bichon.SG -1.312
- gendstat: Goyet_Neanderthal.SG Turkey_Epipaleolithic 0.027
- gendstat: Goyet_Neanderthal.SG ONG.SG -1.520
- gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG 0.400
- gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG 0.951
- gendstat: Russia_Sunghir3.SG Georgia_Satsurblia.SG 0.107
- gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG 0.377
- gendstat: Russia_Sunghir3.SG Papuan.DG 0.131
- gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG -0.791
- gendstat: Russia_Sunghir3.SG Turkey_Epipaleolithic 0.590
- gendstat: Russia_Sunghir3.SG ONG.SG -0.804
- gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG 0.584
- gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG -0.253
- gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG -0.030
- gendstat: Russia_Kostenki14.SG Papuan.DG -0.282
- gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG -1.145
- gendstat: Russia_Kostenki14.SG Turkey_Epipaleolithic 0.240
- gendstat: Russia_Kostenki14.SG ONG.SG -1.192
- gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG -0.799
- gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG -0.678
- gendstat: Russia_MA1_HG.SG Papuan.DG -0.906
- gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG -1.660
- gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic -0.336
- gendstat: Russia_MA1_HG.SG ONG.SG -1.798
- gendstat: Georgia_Satsurblia.SG Russia_DevilsCave_N.SG 0.246
- gendstat: Georgia_Satsurblia.SG Papuan.DG 0.006
- gendstat: Georgia_Satsurblia.SG Switzerland_Bichon.SG -0.890
- gendstat: Georgia_Satsurblia.SG Turkey_Epipaleolithic 0.486
- gendstat: Georgia_Satsurblia.SG ONG.SG -0.887
- gendstat: Russia_DevilsCave_N.SG Papuan.DG -0.337
- gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG -1.161
- gendstat: Russia_DevilsCave_N.SG Turkey_Epipaleolithic 0.293
- gendstat: Russia_DevilsCave_N.SG ONG.SG -1.585
- gendstat: Papuan.DG Switzerland_Bichon.SG -0.943
- gendstat: Papuan.DG Turkey_Epipaleolithic 0.522
- gendstat: Papuan.DG ONG.SG -1.297
- gendstat: Switzerland_Bichon.SG Turkey_Epipaleolithic 1.380
- gendstat: Switzerland_Bichon.SG ONG.SG 0.097
- gendstat: Turkey_Epipaleolithic ONG.SG -1.361
- ##end of qpAdm: 18.110 seconds cpu 1.380 Mbytes in use
- ----------------------------------------------------------------------------------------------------------------------------
- qpAdm: parameter file: parqpadm.txt
- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- fstatsname: fstatsa.txt
- popleft: left.txt
- popright: right.txt
- details: YES
- ## qpAdm version: 1520
- seed: 1155626273
- *** recommended that inbreed be explicitly set ***
- inbreed set NO
- left pops:
- Cretan2.DG
- Greece_Peloponnese_N
- CHG
- EHG
- Israel_Natufian
- right pops:
- Mbuti.DG
- Russia_Ust_Ishim.DG
- China_Tianyuan
- Goyet_Neanderthal.SG
- Russia_Sunghir3.SG
- Russia_Kostenki14.SG
- Russia_MA1_HG.SG
- Georgia_Satsurblia.SG
- Russia_DevilsCave_N.SG
- Papuan.DG
- Switzerland_Bichon.SG
- Turkey_Epipaleolithic
- ONG.SG
- codimension 1
- f4info:
- f4rank: 3 dof: 9 chisq: 26.635 tail: 0.00160722589 dofdiff: 11 chisqdiff: -26.635 taildiff: 1
- B:
- scale 1.000 1.000 1.000
- Russia_Ust_Ishim.DG 0.494 0.105 0.114
- China_Tianyuan 0.865 -0.088 -0.059
- Goyet_Neanderthal.SG 0.070 -0.082 -0.199
- Russia_Sunghir3.SG 0.828 -0.344 0.377
- Russia_Kostenki14.SG 0.848 -0.300 0.210
- Russia_MA1_HG.SG 2.374 -0.471 -1.392
- Georgia_Satsurblia.SG 0.437 3.200 0.230
- Russia_DevilsCave_N.SG 0.835 0.148 -0.055
- Papuan.DG 0.628 0.036 0.044
- Switzerland_Bichon.SG 1.459 -0.778 -0.117
- Turkey_Epipaleolithic -0.159 -0.814 3.118
- ONG.SG 0.727 0.115 0.163
- A:
- scale 322.880 526.296 810.156
- Greece_Peloponnese_N 0.046 -0.145 1.014
- CHG 0.149 1.803 -0.400
- EHG 1.474 -0.537 -0.721
- Israel_Natufian -1.342 -0.665 -1.514
- full rank
- f4info:
- f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 26.635 taildiff: 0.00160722589
- B:
- scale 735.115 283.265 199.688 238.561
- Russia_Ust_Ishim.DG 0.211 0.109 0.409 -0.547
- China_Tianyuan 0.385 0.119 0.918 -0.664
- Goyet_Neanderthal.SG -0.116 -0.029 0.125 0.064
- Russia_Sunghir3.SG 0.275 -0.343 0.693 -0.979
- Russia_Kostenki14.SG 0.863 -0.021 0.914 -0.648
- Russia_MA1_HG.SG -0.522 0.208 2.565 -1.485
- Georgia_Satsurblia.SG -0.428 3.147 -0.314 -1.554
- Russia_DevilsCave_N.SG -0.191 0.198 0.700 -0.915
- Papuan.DG -0.175 -0.035 0.465 -0.756
- Switzerland_Bichon.SG -0.377 -0.735 1.348 -1.399
- Turkey_Epipaleolithic 3.179 -1.150 -0.517 -0.861
- ONG.SG -0.449 -0.064 0.436 -1.072
- A:
- scale 2.000 2.000 2.000 2.000
- Greece_Peloponnese_N 2.000 0.000 0.000 0.000
- CHG 0.000 2.000 0.000 0.000
- EHG 0.000 0.000 2.000 0.000
- Israel_Natufian 0.000 0.000 0.000 2.000
- best coefficients: 0.479 0.160 0.155 0.205
- totmean: 0.479 0.160 0.155 0.205
- boot mean: 0.478 0.160 0.156 0.206
- std. errors: 0.067 0.030 0.028 0.057
- error covariance (* 1,000,000)
- 4462 -555 -696 -3211
- -555 915 -203 -157
- -696 -203 776 123
- -3211 -157 123 3245
- summ: Cretan2.DG 4 0.001607 0.478 0.160 0.156 0.206 4462 -555 -696 -3211 915 ...
- -203 -157 776 123 3245
- fixed pat wt dof chisq tail prob
- 0000 0 9 26.635 0.00160723 0.479 0.160 0.155 0.205
- 0001 1 10 42.497 6.11463e-06 0.678 0.170 0.152 0.000
- 0010 1 10 92.723 1.54214e-15 0.779 0.201 0.000 0.020
- 0100 1 10 54.634 3.69557e-08 0.539 0.000 0.191 0.270
- 1000 1 10 68.722 7.82e-11 0.000 0.192 0.210 0.598
- 0011 2 11 74.978 1.36862e-11 0.793 0.207 0.000 0.000
- 0101 2 11 76.596 6.69267e-12 0.815 0.000 0.185 0.000
- 0110 2 11 102.748 5.09318e-17 0.653 0.000 0.000 0.347
- 1001 2 11 319.024 0 0.000 0.617 0.383 0.000
- 1010 2 11 105.963 1.16903e-17 0.000 0.236 0.000 0.764
- 1100 2 11 90.075 1.61152e-14 0.000 0.000 0.249 0.751
- 0111 3 12 121.451 3.17324e-20 1.000 0.000 0.000 0.000
- 1011 3 12 387.873 0 0.000 1.000 0.000 0.000
- 1101 3 12 648.813 0 0.000 0.000 1.000 0.000
- 1110 3 12 130.468 4.97042e-22 0.000 0.000 0.000 1.000
- best pat: 0000 0.00160723 - -
- best pat: 0001 6.11463e-06 chi(nested): 15.863 p-value for nested model: 6.81103e-05
- best pat: 0011 1.36862e-11 chi(nested): 32.481 p-value for nested model: 1.2037e-08
- best pat: 0111 3.17324e-20 chi(nested): 46.473 p-value for nested model: 9.28777e-12
- coeffs: 0.479 0.160 0.155 0.205
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Greece_Peloponnese_N Russia_Ust_Ishim.DG 0.000287 0.631671
- details: CHG Russia_Ust_Ishim.DG 0.000385 0.675832
- details: EHG Russia_Ust_Ishim.DG 0.002050 3.706167
- details: Israel_Natufian Russia_Ust_Ishim.DG -0.002294 -3.491479
- dscore: Russia_Ust_Ishim.DG f4: 0.000048 Z: 0.113378
- details: Greece_Peloponnese_N China_Tianyuan 0.000524 1.095631
- details: CHG China_Tianyuan 0.000421 0.668833
- details: EHG China_Tianyuan 0.004598 8.015361
- details: Israel_Natufian China_Tianyuan -0.002781 -3.880046
- dscore: China_Tianyuan f4: 0.000464 Z: 1.049446
- details: Greece_Peloponnese_N Goyet_Neanderthal.SG -0.000158 -0.511237
- details: CHG Goyet_Neanderthal.SG -0.000103 -0.259207
- details: EHG Goyet_Neanderthal.SG 0.000627 1.672076
- details: Israel_Natufian Goyet_Neanderthal.SG 0.000269 0.476806
- dscore: Goyet_Neanderthal.SG f4: 0.000060 Z: 0.203206
- details: Greece_Peloponnese_N Russia_Sunghir3.SG 0.000375 0.782222
- details: CHG Russia_Sunghir3.SG -0.001210 -1.946312
- details: EHG Russia_Sunghir3.SG 0.003473 5.995871
- details: Israel_Natufian Russia_Sunghir3.SG -0.004104 -5.483960
- dscore: Russia_Sunghir3.SG f4: -0.000315 Z: -0.694441
- details: Greece_Peloponnese_N Russia_Kostenki14.SG 0.001175 2.435026
- details: CHG Russia_Kostenki14.SG -0.000074 -0.117631
- details: EHG Russia_Kostenki14.SG 0.004576 7.800202
- details: Israel_Natufian Russia_Kostenki14.SG -0.002715 -3.647566
- dscore: Russia_Kostenki14.SG f4: 0.000706 Z: 1.558575
- details: Greece_Peloponnese_N Russia_MA1_HG.SG -0.000710 -1.389492
- details: CHG Russia_MA1_HG.SG 0.000735 1.067710
- details: EHG Russia_MA1_HG.SG 0.012845 20.145715
- details: Israel_Natufian Russia_MA1_HG.SG -0.006226 -7.621227
- dscore: Russia_MA1_HG.SG f4: 0.000498 Z: 1.017295
- details: Greece_Peloponnese_N Georgia_Satsurblia.SG -0.000582 -1.137970
- details: CHG Georgia_Satsurblia.SG 0.011110 15.466109
- details: EHG Georgia_Satsurblia.SG -0.001571 -2.463490
- details: Israel_Natufian Georgia_Satsurblia.SG -0.006516 -7.900699
- dscore: Georgia_Satsurblia.SG f4: -0.000075 Z: -0.155957
- details: Greece_Peloponnese_N Russia_DevilsCave_N.SG -0.000260 -0.645584
- details: CHG Russia_DevilsCave_N.SG 0.000698 1.339047
- details: EHG Russia_DevilsCave_N.SG 0.003504 7.575244
- details: Israel_Natufian Russia_DevilsCave_N.SG -0.003837 -6.027821
- dscore: Russia_DevilsCave_N.SG f4: -0.000254 Z: -0.660133
- details: Greece_Peloponnese_N Papuan.DG -0.000238 -0.624196
- details: CHG Papuan.DG -0.000125 -0.241598
- details: EHG Papuan.DG 0.002327 4.823395
- details: Israel_Natufian Papuan.DG -0.003169 -5.818786
- dscore: Papuan.DG f4: -0.000421 Z: -1.149426
- details: Greece_Peloponnese_N Switzerland_Bichon.SG -0.000513 -0.992005
- details: CHG Switzerland_Bichon.SG -0.002596 -4.055863
- details: EHG Switzerland_Bichon.SG 0.006751 10.503501
- details: Israel_Natufian Switzerland_Bichon.SG -0.005863 -7.615994
- dscore: Switzerland_Bichon.SG f4: -0.000814 Z: -1.695913
- details: Greece_Peloponnese_N Turkey_Epipaleolithic 0.004324 8.509182
- details: CHG Turkey_Epipaleolithic -0.004059 -6.228494
- details: EHG Turkey_Epipaleolithic -0.002589 -4.291466
- details: Israel_Natufian Turkey_Epipaleolithic -0.003608 -4.436505
- dscore: Turkey_Epipaleolithic f4: 0.000281 Z: 0.581446
- details: Greece_Peloponnese_N ONG.SG -0.000611 -1.612476
- details: CHG ONG.SG -0.000225 -0.458481
- details: EHG ONG.SG 0.002183 4.717398
- details: Israel_Natufian ONG.SG -0.004495 -7.823390
- dscore: ONG.SG f4: -0.000910 Z: -2.548939
- gendstat: Mbuti.DG Russia_Ust_Ishim.DG 0.113
- gendstat: Mbuti.DG China_Tianyuan 1.049
- gendstat: Mbuti.DG Goyet_Neanderthal.SG 0.203
- gendstat: Mbuti.DG Russia_Sunghir3.SG -0.694
- gendstat: Mbuti.DG Russia_Kostenki14.SG 1.559
- gendstat: Mbuti.DG Russia_MA1_HG.SG 1.017
- gendstat: Mbuti.DG Georgia_Satsurblia.SG -0.156
- gendstat: Mbuti.DG Russia_DevilsCave_N.SG -0.660
- gendstat: Mbuti.DG Papuan.DG -1.149
- gendstat: Mbuti.DG Switzerland_Bichon.SG -1.696
- gendstat: Mbuti.DG Turkey_Epipaleolithic 0.581
- gendstat: Mbuti.DG ONG.SG -2.549
- gendstat: Russia_Ust_Ishim.DG China_Tianyuan 0.818
- gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG 0.025
- gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG -0.693
- gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 1.270
- gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG 0.834
- gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG -0.226
- gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG -0.664
- gendstat: Russia_Ust_Ishim.DG Papuan.DG -1.079
- gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG -1.591
- gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic 0.431
- gendstat: Russia_Ust_Ishim.DG ONG.SG -2.168
- gendstat: China_Tianyuan Goyet_Neanderthal.SG -0.762
- gendstat: China_Tianyuan Russia_Sunghir3.SG -1.481
- gendstat: China_Tianyuan Russia_Kostenki14.SG 0.463
- gendstat: China_Tianyuan Russia_MA1_HG.SG 0.062
- gendstat: China_Tianyuan Georgia_Satsurblia.SG -0.961
- gendstat: China_Tianyuan Russia_DevilsCave_N.SG -1.717
- gendstat: China_Tianyuan Papuan.DG -2.055
- gendstat: China_Tianyuan Switzerland_Bichon.SG -2.288
- gendstat: China_Tianyuan Turkey_Epipaleolithic -0.325
- gendstat: China_Tianyuan ONG.SG -3.206
- gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG -0.718
- gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG 1.248
- gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG 0.812
- gendstat: Goyet_Neanderthal.SG Georgia_Satsurblia.SG -0.253
- gendstat: Goyet_Neanderthal.SG Russia_DevilsCave_N.SG -0.683
- gendstat: Goyet_Neanderthal.SG Papuan.DG -1.075
- gendstat: Goyet_Neanderthal.SG Switzerland_Bichon.SG -1.586
- gendstat: Goyet_Neanderthal.SG Turkey_Epipaleolithic 0.405
- gendstat: Goyet_Neanderthal.SG ONG.SG -2.203
- gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG 2.135
- gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG 1.469
- gendstat: Russia_Sunghir3.SG Georgia_Satsurblia.SG 0.428
- gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG 0.131
- gendstat: Russia_Sunghir3.SG Papuan.DG -0.231
- gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG -0.910
- gendstat: Russia_Sunghir3.SG Turkey_Epipaleolithic 1.052
- gendstat: Russia_Sunghir3.SG ONG.SG -1.334
- gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -0.387
- gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG -1.392
- gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG -2.098
- gendstat: Russia_Kostenki14.SG Papuan.DG -2.500
- gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG -2.833
- gendstat: Russia_Kostenki14.SG Turkey_Epipaleolithic -0.767
- gendstat: Russia_Kostenki14.SG ONG.SG -3.608
- gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG -0.946
- gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG -1.491
- gendstat: Russia_MA1_HG.SG Papuan.DG -1.891
- gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG -2.413
- gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic -0.372
- gendstat: Russia_MA1_HG.SG ONG.SG -2.814
- gendstat: Georgia_Satsurblia.SG Russia_DevilsCave_N.SG -0.358
- gendstat: Georgia_Satsurblia.SG Papuan.DG -0.688
- gendstat: Georgia_Satsurblia.SG Switzerland_Bichon.SG -1.294
- gendstat: Georgia_Satsurblia.SG Turkey_Epipaleolithic 0.616
- gendstat: Georgia_Satsurblia.SG ONG.SG -1.704
- gendstat: Russia_DevilsCave_N.SG Papuan.DG -0.460
- gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG -1.096
- gendstat: Russia_DevilsCave_N.SG Turkey_Epipaleolithic 1.043
- gendstat: Russia_DevilsCave_N.SG ONG.SG -1.881
- gendstat: Papuan.DG Switzerland_Bichon.SG -0.798
- gendstat: Papuan.DG Turkey_Epipaleolithic 1.355
- gendstat: Papuan.DG ONG.SG -1.433
- gendstat: Switzerland_Bichon.SG Turkey_Epipaleolithic 1.978
- gendstat: Switzerland_Bichon.SG ONG.SG -0.195
- gendstat: Turkey_Epipaleolithic ONG.SG -2.338
- ##end of qpAdm: 18.447 seconds cpu 1.380 Mbytes in use
- ----------------------------------------------------------------------------------------------------------------------------
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