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  1. ---------------------------------------------------------------------------
  2. RemoteTraceback                           Traceback (most recent call last)
  3. RemoteTraceback:
  4. """
  5. Traceback (most recent call last):
  6.  File "/home/simon/miniconda3/envs/caiman/lib/python3.9/multiprocessing/pool.py", line 125, in worker
  7.    result = (True, func(*args, **kwds))
  8.  File "/home/simon/miniconda3/envs/caiman/lib/python3.9/multiprocessing/pool.py", line 48, in mapstar
  9.    return list(map(*args))
  10.  File "/home/simon/miniconda3/envs/caiman/lib/python3.9/site-packages/caiman/source_extraction/cnmf/map_reduce.py", line 137, in cnmf_patches
  11.    cnm = cnm.fit(images)
  12.  File "/home/simon/miniconda3/envs/caiman/lib/python3.9/site-packages/caiman/source_extraction/cnmf/cnmf.py", line 507, in fit
  13.    self.initialize(Y)
  14.  File "/home/simon/miniconda3/envs/caiman/lib/python3.9/site-packages/caiman/source_extraction/cnmf/cnmf.py", line 977, in initialize
  15.    initialize_components(Y, sn=estim.sn, options_total=self.params.to_dict(),
  16.  File "/home/simon/miniconda3/envs/caiman/lib/python3.9/site-packages/caiman/source_extraction/cnmf/initialization.py", line 342, in initialize_components
  17.    Ain, Cin, _, b_in, f_in = greedyROI(
  18.  File "/home/simon/miniconda3/envs/caiman/lib/python3.9/site-packages/caiman/source_extraction/cnmf/initialization.py", line 801, in greedyROI
  19.    rho = imblur(Y, sig=gSig, siz=gSiz, nDimBlur=Y.ndim - 1, kernel=kernel)
  20.  File "/home/simon/miniconda3/envs/caiman/lib/python3.9/site-packages/caiman/source_extraction/cnmf/initialization.py", line 1057, in imblur
  21.    X[:, :, frame] = cv2.GaussianBlur(X[:, :, frame], tuple(
  22. cv2.error: OpenCV(4.5.3) :-1: error: (-5:Bad argument) in function 'GaussianBlur'
  23. > Overload resolution failed:
  24. >  - Can't parse 'ksize'. Expected sequence length 2, got 3
  25. >  - Can't parse 'ksize'. Expected sequence length 2, got 3
  26.  
  27. """
  28.  
  29. The above exception was the direct cause of the following exception:
  30.  
  31. error                                     Traceback (most recent call last)
  32. /tmp/ipykernel_1833755/888080461.py in <module>
  33.       4                 rf=rf, stride=stride, only_init_patch=True)
  34.       5 cnm.params.set('spatial', {'se': np.ones((3,3,1), dtype=np.uint8)})
  35. ----> 6 cnm = cnm.fit(images)
  36.       7
  37.       8 print(('Number of components:' + str(cnm.estimates.A.shape[-1])))
  38.  
  39. ~/miniconda3/envs/caiman/lib/python3.9/site-packages/caiman/source_extraction/cnmf/cnmf.py in fit(self, images, indices)
  40.     599
  41.     600             self.estimates.A, self.estimates.C, self.estimates.YrA, self.estimates.b, self.estimates.f, \
  42. --> 601                 self.estimates.sn, self.estimates.optional_outputs = run_CNMF_patches(
  43.     602                     images.filename, self.dims + (T,), self.params,
  44.     603                     dview=self.dview, memory_fact=self.params.get('patch', 'memory_fact'),
  45.  
  46. ~/miniconda3/envs/caiman/lib/python3.9/site-packages/caiman/source_extraction/cnmf/map_reduce.py in run_CNMF_patches(file_name, shape, params, gnb, dview, memory_fact, border_pix, low_rank_background, del_duplicates, indices)
  47.     245     if dview is not None:
  48.     246         if 'multiprocessing' in str(type(dview)):
  49. --> 247             file_res = dview.map_async(cnmf_patches, args_in).get(4294967)
  50.     248         else:
  51.     249             try:
  52.  
  53. ~/miniconda3/envs/caiman/lib/python3.9/multiprocessing/pool.py in get(self, timeout)
  54.     769             return self._value
  55.     770         else:
  56. --> 771             raise self._value
  57.     772
  58.     773     def _set(self, i, obj):
  59.  
  60. error: OpenCV(4.5.3) :-1: error: (-5:Bad argument) in function 'GaussianBlur'
  61. > Overload resolution failed:
  62. >  - Can't parse 'ksize'. Expected sequence length 2, got 3
  63. >  - Can't parse 'ksize'. Expected sequence length 2, got 3
  64.  
  65.  
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