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  1. os.environ["_ModuleTable_Sz_"] = "9";
  2. ; stderr:
  3. == 2019-03-14 13:57:27,710 modules.py:1204 DEBUG Output found in stdout, seems like '/opt/easybuild/lmod/lmod/libexec/lmod python load NGS/2.9.3-Java-1.8' ran fine
  4. == 2019-03-14 13:57:27,712 modules.py:769 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64', '/opt/easybuild/software/Core/Java/1.8.0_181/lib'] to ['/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64', '/opt/easybuild/software/Core/Java/1.8.0_181/lib', '/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib', '/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib', '/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib', '/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib', '/opt/easybuild/software/Compiler/GCCcore/7.3.0/hwloc/1.11.10/lib', '/opt/easybuild/software/Compiler/GCCcore/7.3.0/numactl/2.0.11/lib', '/opt/easybuild/software/Compiler/GCCcore/7.3.0/zlib/1.2.11/lib', '/opt/easybuild/software/Compiler/GCCcore/7.3.0/binutils/2.30/lib', '/opt/easybuild/software/Core/GCCcore/7.3.0/lib/gcc/x86_64-pc-linux-gnu/7.3.0', '/opt/easybuild/software/Core/GCCcore/7.3.0/lib64', '/opt/easybuild/software/Core/GCCcore/7.3.0/lib']
  5. == 2019-03-14 13:57:27,712 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64:/opt/easybuild/software/Core/Java/1.8.0_181/lib:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib:/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib:/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/hwloc/1.11.10/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/numactl/2.0.11/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/zlib/1.2.11/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/binutils/2.30/lib:/opt/easybuild/software/Core/GCCcore/7.3.0/lib/gcc/x86_64-pc-linux-gnu/7.3.0:/opt/easybuild/software/Core/GCCcore/7.3.0/lib64:/opt/easybuild/software/Core/GCCcore/7.3.0/lib (previous value: '/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64:/opt/easybuild/software/Core/Java/1.8.0_181/lib')
  6. == 2019-03-14 13:57:27,712 modules.py:769 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
  7. == 2019-03-14 13:57:27,712 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
  8. == 2019-03-14 13:57:27,713 modules.py:715 DEBUG Current MODULEPATH: /opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all
  9. == 2019-03-14 13:57:27,714 modules.py:722 DEBUG Changing LD_LIBRARY_PATH from '/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64:/opt/easybuild/software/Core/Java/1.8.0_181/lib:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib:/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib:/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib:/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/hwloc/1.11.10/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/numactl/2.0.11/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/zlib/1.2.11/lib:/opt/easybuild/software/Compiler/GCCcore/7.3.0/binutils/2.30/lib:/opt/easybuild/software/Core/GCCcore/7.3.0/lib/gcc/x86_64-pc-linux-gnu/7.3.0:/opt/easybuild/software/Core/GCCcore/7.3.0/lib64:/opt/easybuild/software/Core/GCCcore/7.3.0/lib' to '' in environment for module command
  10. == 2019-03-14 13:57:27,714 modules.py:722 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
  11. == 2019-03-14 13:57:27,714 modules.py:726 DEBUG Running module command '/opt/easybuild/lmod/lmod/libexec/lmod python show foss/2018b' from /tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0
  12. == 2019-03-14 13:57:28,235 modules.py:732 DEBUG Output of module command '/opt/easybuild/lmod/lmod/libexec/lmod python show foss/2018b': stdout: os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:1\;/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:1\;/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:1\;/opt/easybuild/modules/all/Core:1\;/opt/easybuild/modules/all:1";
  13. os.environ["MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all";
  14. os.environ["_ModuleTable001_"] = "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";
  15. os.environ["_ModuleTable002_"] = "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";
  16. os.environ["_ModuleTable003_"] = "YW1lIl09IkdDQ2NvcmUvNy4zLjAiLFsibG9hZE9yZGVyIl09Mixwcm9wVD17fSxbInN0YWNrRGVwdGgiXT0yLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJHQ0Njb3JlLzcuMy4wIix9LEphdmE9e1siZm4iXT0iL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29yZS9KYXZhLzEuOC4wXzE4MS5sdWEiLFsiZnVsbE5hbWUiXT0iSmF2YS8xLjguMF8xODEiLFsibG9hZE9yZGVyIl09MTMscHJvcFQ9e30sWyJzdGFja0RlcHRoIl09MSxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0iSmF2YS8xLjguMF8xODEiLH0sTkdTPXtbImZuIl09Ii9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL01QSS9HQ0MvNy4zLjAtMi4zMC9PcGVuTVBJLzMuMS4xL05HUy8y";
  17. os.environ["_ModuleTable004_"] = "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";
  18. os.environ["_ModuleTable005_"] = "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";
  19. os.environ["_ModuleTable006_"] = "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";
  20. os.environ["_ModuleTable007_"] = "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";
  21. os.environ["_ModuleTable008_"] = "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";
  22. os.environ["_ModuleTable009_"] = "IiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29tcGlsZXIvR0NDLzcuMy4wLTIuMzAiLCIvb3B0L2Vhc3lidWlsZC9tb2R1bGVzL2FsbC9Db21waWxlci9HQ0Njb3JlLzcuMy4wIiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29yZSIsIi9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL0NvcmUiLH0=";
  23. os.environ["_ModuleTable_Sz_"] = "9";
  24. ; stderr: -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  25. /opt/easybuild/modules/all/Core/foss/2018b.lua:
  26. -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  27. help([[
  28. Description
  29. ===========
  30. GNU Compiler Collection (GCC) based compiler toolchain, including
  31. OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
  32.  
  33.  
  34. More information
  35. ================
  36. - Homepage: (none)
  37. ]])
  38. whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including
  39. OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.")
  40. whatis("Homepage: (none)")
  41. conflict("foss")
  42. setenv("EBROOTFOSS","/opt/easybuild/software/Core/foss/2018b")
  43. setenv("EBVERSIONFOSS","2018b")
  44. setenv("EBDEVELFOSS","/opt/easybuild/software/Core/foss/2018b/easybuild/Core-foss-2018b-easybuild-devel")
  45.  
  46.  
  47. == 2019-03-14 13:57:28,236 modules.py:628 DEBUG Cached result for 'module show foss/2018b' with key '('MODULEPATH=/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all', 'lmod', 'foss/2018b')': os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:1\;/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:1\;/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:1\;/opt/easybuild/modules/all/Core:1\;/opt/easybuild/modules/all:1";
  48. os.environ["MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all";
  49. os.environ["_ModuleTable001_"] = "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";
  50. os.environ["_ModuleTable002_"] = "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";
  51. os.environ["_ModuleTable003_"] = "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";
  52. os.environ["_ModuleTable004_"] = "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";
  53. os.environ["_ModuleTable005_"] = "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";
  54. os.environ["_ModuleTable006_"] = "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";
  55. os.environ["_ModuleTable007_"] = "ZXIiXT0xMixwcm9wVD17fSxbInN0YWNrRGVwdGgiXT0wLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJmb3NzLzIwMThiIix9LGh3bG9jPXtbImZuIl09Ii9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL0NvbXBpbGVyL0dDQ2NvcmUvNy4zLjAvaHdsb2MvMS4xMS4xMC5sdWEiLFsiZnVsbE5hbWUiXT0iaHdsb2MvMS4xMS4xMCIsWyJsb2FkT3JkZXIiXT03LHByb3BUPXt9LFsic3RhY2tEZXB0aCJdPTIsWyJzdGF0dXMiXT0iYWN0aXZlIixbInVzZXJOYW1lIl09Imh3bG9jLzEuMTEuMTAiLH0sbnVtYWN0bD17WyJmbiJdPSIvb3B0L2Vhc3lidWlsZC9tb2R1bGVzL2FsbC9Db21waWxlci9HQ0Njb3JlLzcuMy4wL251bWFjdGwvMi4wLjExLmx1YSIsWyJmdWxsTmFt";
  56. os.environ["_ModuleTable008_"] = "ZSJdPSJudW1hY3RsLzIuMC4xMSIsWyJsb2FkT3JkZXIiXT02LHByb3BUPXt9LFsic3RhY2tEZXB0aCJdPTMsWyJzdGF0dXMiXT0iYWN0aXZlIixbInVzZXJOYW1lIl09Im51bWFjdGwvMi4wLjExIix9LHpsaWI9e1siZm4iXT0iL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29tcGlsZXIvR0NDY29yZS83LjMuMC96bGliLzEuMi4xMS5sdWEiLFsiZnVsbE5hbWUiXT0iemxpYi8xLjIuMTEiLFsibG9hZE9yZGVyIl09NSxwcm9wVD17fSxbInN0YWNrRGVwdGgiXT0yLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJ6bGliLzEuMi4xMSIsfSx9LG1wYXRoQT17Ii9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL01QSS9HQ0MvNy4zLjAtMi4zMC9PcGVuTVBJLzMuMS4x";
  57. os.environ["_ModuleTable009_"] = "IiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29tcGlsZXIvR0NDLzcuMy4wLTIuMzAiLCIvb3B0L2Vhc3lidWlsZC9tb2R1bGVzL2FsbC9Db21waWxlci9HQ0Njb3JlLzcuMy4wIiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29yZSIsIi9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL0NvcmUiLH0=";
  58. os.environ["_ModuleTable_Sz_"] = "9";
  59. -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  60. /opt/easybuild/modules/all/Core/foss/2018b.lua:
  61. -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  62. help([[
  63. Description
  64. ===========
  65. GNU Compiler Collection (GCC) based compiler toolchain, including
  66. OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
  67.  
  68.  
  69. More information
  70. ================
  71. - Homepage: (none)
  72. ]])
  73. whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including
  74. OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.")
  75. whatis("Homepage: (none)")
  76. conflict("foss")
  77. setenv("EBROOTFOSS","/opt/easybuild/software/Core/foss/2018b")
  78. setenv("EBVERSIONFOSS","2018b")
  79. setenv("EBDEVELFOSS","/opt/easybuild/software/Core/foss/2018b/easybuild/Core-foss-2018b-easybuild-devel")
  80.  
  81.  
  82. == 2019-03-14 13:57:28,237 modules.py:562 DEBUG Result for existence check of foss/2018b module: True
  83. == 2019-03-14 13:57:28,237 modules.py:624 DEBUG Found cached result for 'module show foss/2018b' with key '('MODULEPATH=/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all', 'lmod', 'foss/2018b')': os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:1\;/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:1\;/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:1\;/opt/easybuild/modules/all/Core:1\;/opt/easybuild/modules/all:1";
  84. os.environ["MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1:/opt/easybuild/modules/all/Compiler/GCC/7.3.0-2.30:/opt/easybuild/modules/all/Compiler/GCCcore/7.3.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all";
  85. os.environ["_ModuleTable001_"] = "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";
  86. os.environ["_ModuleTable002_"] = "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";
  87. os.environ["_ModuleTable003_"] = "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";
  88. os.environ["_ModuleTable004_"] = "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";
  89. os.environ["_ModuleTable005_"] = "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";
  90. os.environ["_ModuleTable006_"] = "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";
  91. os.environ["_ModuleTable007_"] = "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";
  92. os.environ["_ModuleTable008_"] = "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";
  93. os.environ["_ModuleTable009_"] = "IiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29tcGlsZXIvR0NDLzcuMy4wLTIuMzAiLCIvb3B0L2Vhc3lidWlsZC9tb2R1bGVzL2FsbC9Db21waWxlci9HQ0Njb3JlLzcuMy4wIiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29yZSIsIi9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL0NvcmUiLH0=";
  94. os.environ["_ModuleTable_Sz_"] = "9";
  95. -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  96. /opt/easybuild/modules/all/Core/foss/2018b.lua:
  97. -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  98. help([[
  99. Description
  100. ===========
  101. GNU Compiler Collection (GCC) based compiler toolchain, including
  102. OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
  103.  
  104.  
  105. More information
  106. ================
  107. - Homepage: (none)
  108. ]])
  109. whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including
  110. OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.")
  111. whatis("Homepage: (none)")
  112. conflict("foss")
  113. setenv("EBROOTFOSS","/opt/easybuild/software/Core/foss/2018b")
  114. setenv("EBVERSIONFOSS","2018b")
  115. setenv("EBDEVELFOSS","/opt/easybuild/software/Core/foss/2018b/easybuild/Core-foss-2018b-easybuild-devel")
  116.  
  117.  
  118. == 2019-03-14 13:57:28,238 toolchain.py:627 DEBUG List of toolchain dependencies from toolchain module: ['GCC/7.3.0-2.30', 'OpenMPI/3.1.1', 'OpenBLAS/0.3.1', 'FFTW/3.3.8', 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1']
  119. == 2019-03-14 13:57:28,239 toolchain.py:445 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '2018b', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'foss', 'full_mod_name': 'Core/foss/2018b', 'hidden': False, 'parsed': True, 'short_mod_name': 'foss/2018b'}: {'LAPACK': ['OpenBLAS'], 'SCALAPACK': ['ScaLAPACK'], 'BLAS': ['OpenBLAS'], 'FFT': ['FFTW'], 'BLACS': ['BLACS'], 'MPI': ['OpenMPI'], 'COMPILER': ['GCC']}
  120. == 2019-03-14 13:57:28,239 toolchain.py:303 DEBUG get_software_version software version 2.0.2 for ScaLAPACK was found in environment
  121. == 2019-03-14 13:57:28,240 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
  122. == 2019-03-14 13:57:28,240 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
  123. == 2019-03-14 13:57:28,240 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
  124. == 2019-03-14 13:57:28,240 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
  125. == 2019-03-14 13:57:28,241 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
  126. == 2019-03-14 13:57:28,241 toolchain.py:637 DEBUG Removing BLACS from list of optional toolchain elements.
  127. == 2019-03-14 13:57:28,241 toolchain.py:640 DEBUG List of toolchain elements from toolchain definition: set(['GCC', 'FFTW', 'OpenMPI', 'ScaLAPACK', 'OpenBLAS'])
  128. == 2019-03-14 13:57:28,241 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: True
  129. == 2019-03-14 13:57:28,242 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False
  130. == 2019-03-14 13:57:28,242 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False
  131. == 2019-03-14 13:57:28,242 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False
  132. == 2019-03-14 13:57:28,242 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False
  133. == 2019-03-14 13:57:28,243 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False
  134. == 2019-03-14 13:57:28,243 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False
  135. == 2019-03-14 13:57:28,243 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False
  136. == 2019-03-14 13:57:28,243 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: True
  137. == 2019-03-14 13:57:28,244 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False
  138. == 2019-03-14 13:57:28,244 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False
  139. == 2019-03-14 13:57:28,244 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: True
  140. == 2019-03-14 13:57:28,244 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False
  141. == 2019-03-14 13:57:28,245 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False
  142. == 2019-03-14 13:57:28,245 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False
  143. == 2019-03-14 13:57:28,245 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False
  144. == 2019-03-14 13:57:28,245 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False
  145. == 2019-03-14 13:57:28,246 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False
  146. == 2019-03-14 13:57:28,246 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False
  147. == 2019-03-14 13:57:28,246 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: True
  148. == 2019-03-14 13:57:28,247 mns.py:164 DEBUG Checking whether 'GCC/7.3.0-2.30' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False
  149. == 2019-03-14 13:57:28,247 mns.py:164 DEBUG Checking whether 'OpenMPI/3.1.1' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False
  150. == 2019-03-14 13:57:28,247 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.3.1' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: True
  151. == 2019-03-14 13:57:28,247 mns.py:164 DEBUG Checking whether 'FFTW/3.3.8' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False
  152. == 2019-03-14 13:57:28,247 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.3.1' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False
  153. == 2019-03-14 13:57:28,248 toolchain.py:643 INFO List of toolchain dependency modules and toolchain definition match!
  154. == 2019-03-14 13:57:28,249 options.py:90 WARNING option: option with name _opt_CC returns None
  155. == 2019-03-14 13:57:28,249 options.py:90 WARNING option: option with name _opt_CXX returns None
  156. == 2019-03-14 13:57:28,250 options.py:90 WARNING option: option with name _opt_F77 returns None
  157. == 2019-03-14 13:57:28,250 options.py:90 WARNING option: option with name _opt_F90 returns None
  158. == 2019-03-14 13:57:28,250 options.py:90 WARNING option: option with name _opt_FC returns None
  159. == 2019-03-14 13:57:28,261 compiler.py:346 INFO _set_optimal_architecture: using march=native as optarch for x86_64.
  160. == 2019-03-14 13:57:28,264 toolchain.py:303 DEBUG get_software_version software version 3.1.1 for OpenMPI was found in environment
  161. == 2019-03-14 13:57:28,266 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1 for OpenMPI was found in environment
  162. == 2019-03-14 13:57:28,298 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1 for OpenBLAS was found in environment
  163. == 2019-03-14 13:57:28,299 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1 for OpenBLAS was found in environment
  164. == 2019-03-14 13:57:28,299 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib64 was not found
  165. == 2019-03-14 13:57:28,303 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1 for OpenBLAS was found in environment
  166. == 2019-03-14 13:57:28,304 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib64 was not found
  167. == 2019-03-14 13:57:28,304 toolchain.py:303 DEBUG get_software_version software version 2.0.2 for ScaLAPACK was found in environment
  168. == 2019-03-14 13:57:28,307 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1 for ScaLAPACK was found in environment
  169. == 2019-03-14 13:57:28,365 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1 for ScaLAPACK was found in environment
  170. == 2019-03-14 13:57:28,365 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib64 was not found
  171. == 2019-03-14 13:57:28,366 toolchain.py:303 DEBUG get_software_version software version 3.3.8 for FFTW was found in environment
  172. == 2019-03-14 13:57:28,367 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8 for FFTW was found in environment
  173. == 2019-03-14 13:57:28,387 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8 for FFTW was found in environment
  174. == 2019-03-14 13:57:28,388 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib64 was not found
  175. == 2019-03-14 13:57:28,389 toolchain.py:735 DEBUG prepare: set additional variables onlymod=False
  176. == 2019-03-14 13:57:28,389 toolchain.py:294 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8 for NGS was found in environment
  177. == 2019-03-14 13:57:28,408 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib was not found
  178. == 2019-03-14 13:57:28,412 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_INC_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include
  179. == 2019-03-14 13:57:28,412 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined)
  180. == 2019-03-14 13:57:28,412 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined)
  181. == 2019-03-14 13:57:28,412 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_INC_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include
  182. == 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined)
  183. == 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined)
  184. == 2019-03-14 13:57:28,413 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_LIB_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib
  185. == 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined)
  186. == 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined)
  187. == 2019-03-14 13:57:28,413 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a
  188. == 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  189. == 2019-03-14 13:57:28,413 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  190. == 2019-03-14 13:57:28,414 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a
  191. == 2019-03-14 13:57:28,414 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  192. == 2019-03-14 13:57:28,414 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  193. == 2019-03-14 13:57:28,414 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_LIB_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib
  194. == 2019-03-14 13:57:28,414 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined)
  195. == 2019-03-14 13:57:28,414 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined)
  196. == 2019-03-14 13:57:28,414 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_MT_STATIC_LIBS to libopenblas.a,libgfortran.a
  197. == 2019-03-14 13:57:28,414 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  198. == 2019-03-14 13:57:28,415 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  199. == 2019-03-14 13:57:28,415 toolchain.py:954 DEBUG _setenv_variables: setting environment variable BLAS_STATIC_LIBS to libopenblas.a,libgfortran.a
  200. == 2019-03-14 13:57:28,415 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  201. == 2019-03-14 13:57:28,415 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  202. == 2019-03-14 13:57:28,415 toolchain.py:954 DEBUG _setenv_variables: setting environment variable CC to gcc
  203. == 2019-03-14 13:57:28,415 environment.py:97 INFO Environment variable CC set to gcc (previously undefined)
  204. == 2019-03-14 13:57:28,415 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined)
  205. == 2019-03-14 13:57:28,415 toolchain.py:954 DEBUG _setenv_variables: setting environment variable CFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno
  206. == 2019-03-14 13:57:28,416 environment.py:97 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  207. == 2019-03-14 13:57:28,416 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  208. == 2019-03-14 13:57:28,416 toolchain.py:954 DEBUG _setenv_variables: setting environment variable CPPFLAGS to -I/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/include
  209. == 2019-03-14 13:57:28,416 environment.py:97 INFO Environment variable CPPFLAGS set to -I/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/include (previously undefined)
  210. == 2019-03-14 13:57:28,416 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include -I/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/include (previously undefined)
  211. == 2019-03-14 13:57:28,416 toolchain.py:954 DEBUG _setenv_variables: setting environment variable CXX to g++
  212. == 2019-03-14 13:57:28,416 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined)
  213. == 2019-03-14 13:57:28,417 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined)
  214. == 2019-03-14 13:57:28,417 toolchain.py:954 DEBUG _setenv_variables: setting environment variable CXXFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno
  215. == 2019-03-14 13:57:28,417 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  216. == 2019-03-14 13:57:28,417 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  217. == 2019-03-14 13:57:28,417 toolchain.py:954 DEBUG _setenv_variables: setting environment variable F77 to gfortran
  218. == 2019-03-14 13:57:28,417 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined)
  219. == 2019-03-14 13:57:28,417 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined)
  220. == 2019-03-14 13:57:28,417 toolchain.py:954 DEBUG _setenv_variables: setting environment variable F90 to gfortran
  221. == 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined)
  222. == 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined)
  223. == 2019-03-14 13:57:28,418 toolchain.py:954 DEBUG _setenv_variables: setting environment variable F90FLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno
  224. == 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  225. == 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  226. == 2019-03-14 13:57:28,418 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FC to gfortran
  227. == 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined)
  228. == 2019-03-14 13:57:28,418 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined)
  229. == 2019-03-14 13:57:28,419 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FCFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno
  230. == 2019-03-14 13:57:28,419 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  231. == 2019-03-14 13:57:28,419 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  232. == 2019-03-14 13:57:28,419 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno
  233. == 2019-03-14 13:57:28,419 environment.py:97 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  234. == 2019-03-14 13:57:28,419 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined)
  235. == 2019-03-14 13:57:28,419 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFTW_INC_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include
  236. == 2019-03-14 13:57:28,419 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include (previously undefined)
  237. == 2019-03-14 13:57:28,420 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include (previously undefined)
  238. == 2019-03-14 13:57:28,420 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFTW_LIB_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib
  239. == 2019-03-14 13:57:28,420 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib (previously undefined)
  240. == 2019-03-14 13:57:28,420 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib (previously undefined)
  241. == 2019-03-14 13:57:28,420 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS to libfftw3.a
  242. == 2019-03-14 13:57:28,420 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined)
  243. == 2019-03-14 13:57:28,420 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined)
  244. == 2019-03-14 13:57:28,420 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS_MT to -fftw3 -pthread
  245. == 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
  246. == 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
  247. == 2019-03-14 13:57:28,421 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFT_INC_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include
  248. == 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable FFT_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include (previously undefined)
  249. == 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/include (previously undefined)
  250. == 2019-03-14 13:57:28,421 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFT_LIB_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib
  251. == 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib (previously undefined)
  252. == 2019-03-14 13:57:28,421 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib (previously undefined)
  253. == 2019-03-14 13:57:28,422 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS to libfftw3.a
  254. == 2019-03-14 13:57:28,422 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined)
  255. == 2019-03-14 13:57:28,422 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined)
  256. == 2019-03-14 13:57:28,422 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS_MT to libfftw3.a,libpthread.a
  257. == 2019-03-14 13:57:28,422 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
  258. == 2019-03-14 13:57:28,422 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
  259. == 2019-03-14 13:57:28,422 toolchain.py:954 DEBUG _setenv_variables: setting environment variable FLIBS to -lgfortran
  260. == 2019-03-14 13:57:28,422 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined)
  261. == 2019-03-14 13:57:28,423 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined)
  262. == 2019-03-14 13:57:28,423 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LAPACK_INC_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include
  263. == 2019-03-14 13:57:28,423 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined)
  264. == 2019-03-14 13:57:28,423 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/include (previously undefined)
  265. == 2019-03-14 13:57:28,423 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LAPACK_LIB_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib
  266. == 2019-03-14 13:57:28,423 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined)
  267. == 2019-03-14 13:57:28,423 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib (previously undefined)
  268. == 2019-03-14 13:57:28,423 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a
  269. == 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  270. == 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  271. == 2019-03-14 13:57:28,424 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a
  272. == 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  273. == 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  274. == 2019-03-14 13:57:28,424 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib64 -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib -L/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64
  275. == 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable LDFLAGS set to -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib64 -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib -L/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64 (previously undefined)
  276. == 2019-03-14 13:57:28,424 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib64 -L/opt/easybuild/software/Core/GCCcore/7.3.0/lib -L/opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/FFTW/3.3.8/lib -L/opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/NGS/2.9.3-Java-1.8/lib64 (previously undefined)
  277. == 2019-03-14 13:57:28,425 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBBLAS to -lopenblas -lgfortran
  278. == 2019-03-14 13:57:28,425 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previously undefined)
  279. == 2019-03-14 13:57:28,425 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined)
  280. == 2019-03-14 13:57:28,425 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBBLAS_MT to -lopenblas -lgfortran
  281. == 2019-03-14 13:57:28,425 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
  282. == 2019-03-14 13:57:28,425 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
  283. == 2019-03-14 13:57:28,425 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBFFT to -lfftw3
  284. == 2019-03-14 13:57:28,425 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined)
  285. == 2019-03-14 13:57:28,426 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined)
  286. == 2019-03-14 13:57:28,426 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBFFT_MT to -lfftw3 -lpthread
  287. == 2019-03-14 13:57:28,426 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
  288. == 2019-03-14 13:57:28,426 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
  289. == 2019-03-14 13:57:28,426 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBLAPACK to -lopenblas -lgfortran
  290. == 2019-03-14 13:57:28,426 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previously undefined)
  291. == 2019-03-14 13:57:28,426 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined)
  292. == 2019-03-14 13:57:28,426 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT to -lopenblas -lgfortran
  293. == 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
  294. == 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
  295. == 2019-03-14 13:57:28,427 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -lopenblas -lgfortran
  296. == 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
  297. == 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
  298. == 2019-03-14 13:57:28,427 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBLAPACK_ONLY to -lopenblas -lgfortran
  299. == 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
  300. == 2019-03-14 13:57:28,427 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
  301. == 2019-03-14 13:57:28,428 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBS to -lm -lpthread
  302. == 2019-03-14 13:57:28,428 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined)
  303. == 2019-03-14 13:57:28,428 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined)
  304. == 2019-03-14 13:57:28,428 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK to -lscalapack -lopenblas -lgfortran
  305. == 2019-03-14 13:57:28,428 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
  306. == 2019-03-14 13:57:28,428 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
  307. == 2019-03-14 13:57:28,428 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT to -lscalapack -lopenblas -lpthread -lgfortran
  308. == 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
  309. == 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
  310. == 2019-03-14 13:57:28,429 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -lscalapack -lgfortran
  311. == 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
  312. == 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
  313. == 2019-03-14 13:57:28,429 toolchain.py:954 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -lscalapack -lgfortran
  314. == 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
  315. == 2019-03-14 13:57:28,429 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
  316. == 2019-03-14 13:57:28,430 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPICC to mpicc
  317. == 2019-03-14 13:57:28,430 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined)
  318. == 2019-03-14 13:57:28,430 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined)
  319. == 2019-03-14 13:57:28,430 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPICXX to mpicxx
  320. == 2019-03-14 13:57:28,430 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined)
  321. == 2019-03-14 13:57:28,430 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined)
  322. == 2019-03-14 13:57:28,430 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPIF77 to mpifort
  323. == 2019-03-14 13:57:28,430 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined)
  324. == 2019-03-14 13:57:28,431 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined)
  325. == 2019-03-14 13:57:28,431 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPIF90 to mpifort
  326. == 2019-03-14 13:57:28,431 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined)
  327. == 2019-03-14 13:57:28,431 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined)
  328. == 2019-03-14 13:57:28,431 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPIFC to mpifort
  329. == 2019-03-14 13:57:28,431 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined)
  330. == 2019-03-14 13:57:28,431 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined)
  331. == 2019-03-14 13:57:28,431 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPI_INC_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/include
  332. == 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable MPI_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/include (previously undefined)
  333. == 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/include (previously undefined)
  334. == 2019-03-14 13:57:28,432 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPI_LIB_DIR to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib
  335. == 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib (previously undefined)
  336. == 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib (previously undefined)
  337. == 2019-03-14 13:57:28,432 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPI_LIB_SHARED to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib/libmpi.so
  338. == 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib/libmpi.so (previously undefined)
  339. == 2019-03-14 13:57:28,432 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /opt/easybuild/software/Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1/lib/libmpi.so (previously undefined)
  340. == 2019-03-14 13:57:28,433 toolchain.py:954 DEBUG _setenv_variables: setting environment variable MPI_LIB_STATIC to
  341. == 2019-03-14 13:57:28,433 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previously undefined)
  342. == 2019-03-14 13:57:28,433 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined)
  343. == 2019-03-14 13:57:28,433 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OMPI_CC to gcc
  344. == 2019-03-14 13:57:28,433 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previously undefined)
  345. == 2019-03-14 13:57:28,433 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined)
  346. == 2019-03-14 13:57:28,433 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OMPI_CXX to g++
  347. == 2019-03-14 13:57:28,433 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previously undefined)
  348. == 2019-03-14 13:57:28,434 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined)
  349. == 2019-03-14 13:57:28,434 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OMPI_F77 to gfortran
  350. == 2019-03-14 13:57:28,434 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previously undefined)
  351. == 2019-03-14 13:57:28,434 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined)
  352. == 2019-03-14 13:57:28,434 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OMPI_F90 to gfortran
  353. == 2019-03-14 13:57:28,434 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previously undefined)
  354. == 2019-03-14 13:57:28,434 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined)
  355. == 2019-03-14 13:57:28,435 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OMPI_FC to gfortran
  356. == 2019-03-14 13:57:28,435 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previously undefined)
  357. == 2019-03-14 13:57:28,435 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined)
  358. == 2019-03-14 13:57:28,435 toolchain.py:954 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -ftree-vectorize -march=native
  359. == 2019-03-14 13:57:28,435 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined)
  360. == 2019-03-14 13:57:28,435 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined)
  361. == 2019-03-14 13:57:28,435 toolchain.py:954 DEBUG _setenv_variables: setting environment variable PRECFLAGS to -fno-math-errno
  362. == 2019-03-14 13:57:28,435 environment.py:97 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined)
  363. == 2019-03-14 13:57:28,436 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined)
  364. == 2019-03-14 13:57:28,436 toolchain.py:954 DEBUG _setenv_variables: setting environment variable SCALAPACK_INC_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include
  365. == 2019-03-14 13:57:28,436 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include (previously undefined)
  366. == 2019-03-14 13:57:28,436 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/include (previously undefined)
  367. == 2019-03-14 13:57:28,436 toolchain.py:954 DEBUG _setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib
  368. == 2019-03-14 13:57:28,436 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib (previously undefined)
  369. == 2019-03-14 13:57:28,436 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /opt/easybuild/software/MPI/GCC/7.3.0-2.30/OpenMPI/3.1.1/ScaLAPACK/2.0.2-OpenBLAS-0.3.1/lib (previously undefined)
  370. == 2019-03-14 13:57:28,436 toolchain.py:954 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a
  371. == 2019-03-14 13:57:28,437 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
  372. == 2019-03-14 13:57:28,437 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
  373. == 2019-03-14 13:57:28,437 toolchain.py:954 DEBUG _setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a
  374. == 2019-03-14 13:57:28,437 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
  375. == 2019-03-14 13:57:28,437 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
  376. == 2019-03-14 13:57:28,437 toolchain.py:303 DEBUG get_software_version software version 3.1.1 for OpenMPI was found in environment
  377. == 2019-03-14 13:57:28,438 easyblock.py:1465 INFO Using /tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/ as start dir
  378. == 2019-03-14 13:57:28,438 easyblock.py:1468 DEBUG Changed to real build directory /tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/ (start_dir)
  379. == 2019-03-14 13:57:28,438 easyblock.py:2608 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
  380. == 2019-03-14 13:57:28,438 build_log.py:252 INFO configuring...
  381. == 2019-03-14 13:57:28,438 easyblock.py:2616 INFO Starting configure step
  382. == 2019-03-14 13:57:28,438 templates.py:156 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fa53df5c650>
  383. == 2019-03-14 13:57:28,438 templates.py:183 DEBUG version found in easyconfig is 3.0.0
  384. == 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: bitbucket_account, config: %(namelower)s
  385. == 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: github_account, config: %(namelower)s
  386. == 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: name, config: SRPRISM
  387. == 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: version, config: 3.0.0
  388. == 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: versionsuffix, config:
  389. == 2019-03-14 13:57:28,439 templates.py:227 DEBUG name: versionprefix, config:
  390. == 2019-03-14 13:57:28,439 templates.py:156 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fa53df5c650>
  391. == 2019-03-14 13:57:28,440 templates.py:183 DEBUG version found in easyconfig is 3.0.0
  392. == 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: bitbucket_account, config: %(namelower)s
  393. == 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: github_account, config: %(namelower)s
  394. == 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: name, config: SRPRISM
  395. == 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: version, config: 3.0.0
  396. == 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: versionsuffix, config:
  397. == 2019-03-14 13:57:28,440 templates.py:227 DEBUG name: versionprefix, config:
  398. == 2019-03-14 13:57:28,440 easyblock.py:2622 INFO Running method configure_step part of step configure
  399. == 2019-03-14 13:57:28,441 easyblock.py:2608 DEBUG Not skipping build step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
  400. == 2019-03-14 13:57:28,441 build_log.py:252 INFO building...
  401. == 2019-03-14 13:57:28,441 easyblock.py:2616 INFO Starting build step
  402. == 2019-03-14 13:57:28,441 templates.py:156 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fa53df5c650>
  403. == 2019-03-14 13:57:28,441 templates.py:183 DEBUG version found in easyconfig is 3.0.0
  404. == 2019-03-14 13:57:28,441 templates.py:227 DEBUG name: bitbucket_account, config: %(namelower)s
  405. == 2019-03-14 13:57:28,441 templates.py:227 DEBUG name: github_account, config: %(namelower)s
  406. == 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: name, config: SRPRISM
  407. == 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: version, config: 3.0.0
  408. == 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: versionsuffix, config:
  409. == 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: versionprefix, config:
  410. == 2019-03-14 13:57:28,442 templates.py:156 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fa53df5c650>
  411. == 2019-03-14 13:57:28,442 templates.py:183 DEBUG version found in easyconfig is 3.0.0
  412. == 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: bitbucket_account, config: %(namelower)s
  413. == 2019-03-14 13:57:28,442 templates.py:227 DEBUG name: github_account, config: %(namelower)s
  414. == 2019-03-14 13:57:28,443 templates.py:227 DEBUG name: name, config: SRPRISM
  415. == 2019-03-14 13:57:28,443 templates.py:227 DEBUG name: version, config: 3.0.0
  416. == 2019-03-14 13:57:28,443 templates.py:227 DEBUG name: versionsuffix, config:
  417. == 2019-03-14 13:57:28,443 templates.py:227 DEBUG name: versionprefix, config:
  418. == 2019-03-14 13:57:28,443 easyblock.py:2622 INFO Running method build_step part of step build
  419. == 2019-03-14 13:57:28,443 run.py:135 DEBUG run_cmd: Output of "cd srprism/lib && make -j 24 && cd ../app && make" will be logged to /tmp/eb-ypvdUu/easybuild-run_cmd-nf4a1s.log
  420. == 2019-03-14 13:57:28,444 run.py:173 DEBUG run_cmd: running cmd cd srprism/lib && make -j 24 && cd ../app && make (in /tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0)
  421. == 2019-03-14 13:57:28,444 run.py:192 INFO running cmd: cd srprism/lib && make -j 24 && cd ../app && make
  422. == 2019-03-14 13:58:02,166 build_log.py:163 ERROR EasyBuild crashed with an error (at easybuild/EB-develop/vsc-base/lib/vsc/utils/exceptions.py:124 in __init__): cmd "cd srprism/lib && make -j 24 && cd ../app && make" exited with exit code 2 and output:
  423. for i in common seq srprism ; do make -C $i ; done
  424. make[1]: Entering directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/common'
  425. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o binfile.o binfile.cpp
  426. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o bzipfile.o bzipfile.cpp
  427. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o file.o file.cpp
  428. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o text_formatter.o text_formatter.cpp
  429. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o textfile.o textfile.cpp
  430. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o tmpstore.o tmpstore.cpp
  431. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o trace.o trace.cpp
  432. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o util.o util.cpp
  433. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o zipfile.o zipfile.cpp
  434. In file included from bzipfile.cpp:38:0:
  435. ../common/bzipfile.hpp:39:10: fatal error: bzlib.h: No such file or directory
  436. #include <bzlib.h>
  437. ^~~~~~~~~
  438. compilation terminated.
  439. Makefile:36: recipe for target 'bzipfile.o' failed
  440. make[1]: *** [bzipfile.o] Error 1
  441. make[1]: *** Waiting for unfinished jobs....
  442. In file included from textfile.cpp:42:0:
  443. bzipfile.hpp:39:10: fatal error: bzlib.h: No such file or directory
  444. #include <bzlib.h>
  445. ^~~~~~~~~
  446. compilation terminated.
  447. Makefile:36: recipe for target 'textfile.o' failed
  448. make[1]: *** [textfile.o] Error 1
  449. make[1]: Leaving directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/common'
  450. make[1]: Entering directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/seq'
  451. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o cfasta_stream.o cfasta_stream.cpp
  452. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o cfastq_stream.o cfastq_stream.cpp
  453. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o fasta_stream.o fasta_stream.cpp
  454. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o fastq_stream.o fastq_stream.cpp
  455. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqdef.o seqdef.cpp
  456. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqinput_factory.o seqinput_factory.cpp
  457. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqinput_multistream.o seqinput_multistream.cpp
  458. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqinput_sam.o seqinput_sam.cpp
  459. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqinput_sra.o seqinput_sra.cpp
  460. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o stream_factory.o stream_factory.cpp
  461. ar cr libseq.a cfasta_stream.o cfastq_stream.o fasta_stream.o fastq_stream.o seqdef.o seqinput_factory.o seqinput_multistream.o seqinput_sam.o seqinput_sra.o stream_factory.o ;
  462. ranlib libseq.a
  463. make[1]: Leaving directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/seq'
  464. make[1]: Entering directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/srprism'
  465. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o align.o align.cpp
  466. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o batch.o batch.cpp
  467. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o idx_reader.o idx_reader.cpp
  468. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o idxmap_reader.o idxmap_reader.cpp
  469. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o index_iterator.o index_iterator.cpp
  470. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o memmgr.o memmgr.cpp
  471. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o mkidx.o mkidx.cpp
  472. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o mkidx_pass.o mkidx_pass.cpp
  473. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o nmer_iterator.o nmer_iterator.cpp
  474. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o out_sam.o out_sam.cpp
  475. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o out_tabular.o out_tabular.cpp
  476. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o query_data.o query_data.cpp
  477. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o query_store.o query_store.cpp
  478. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o rmap.o rmap.cpp
  479. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o search.o search.cpp
  480. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o search_pass.o search_pass.cpp
  481. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqstore.o seqstore.cpp
  482. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o seqstore_factory.o seqstore_factory.cpp
  483. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o sidmap.o sidmap.cpp
  484. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -c -o tmpres_mgr.o tmpres_mgr.cpp
  485. ar cr libsrprism.a align.o batch.o idx_reader.o idxmap_reader.o index_iterator.o memmgr.o mkidx.o mkidx_pass.o nmer_iterator.o out_sam.o out_tabular.o query_data.o query_store.o rmap.o search.o search_pass.o seqstore.o seqstore_factory.o sidmap.o tmpres_mgr.o ;
  486. ranlib libsrprism.a
  487. make[1]: Leaving directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/srprism'
  488. g++ -I. -I.. -I../lib -std=c++11 -O3 -Wno-deprecated-declarations -c -o options_parser.o options_parser.cpp
  489. g++ -I. -I.. -I../lib -std=c++11 -O3 -Wno-deprecated-declarations -c -o srprism.o srprism.cpp
  490. g++ -o srprism options_parser.o srprism.o ../lib/srprism/libsrprism.a ../lib/seq/libseq.a ../lib/common/libcommon.a -lm -lpthread -lz -lbz2
  491. g++: error: ../lib/common/libcommon.a: No such file or directory
  492. Makefile:23: recipe for target 'srprism' failed
  493. make: *** [srprism] Error 1
  494. (at easybuild/EB-develop/easybuild-framework/easybuild/tools/run.py:501 in parse_cmd_output)
  495. == 2019-03-14 13:58:02,166 easyblock.py:2870 WARNING build failed (first 300 chars): cmd "cd srprism/lib && make -j 24 && cd ../app && make" exited with exit code 2 and output:
  496. for i in common seq srprism ; do make -C $i ; done
  497. make[1]: Entering directory '/tmp/SRPRISM/3.0.0/foss-2018b/SRPRISM-3.0.0/srprism/lib/common'
  498. g++ -I.. -I../.. -std=c++11 -O3 -Wno-deprecated-declarations -
  499. == 2019-03-14 13:58:02,166 easyblock.py:288 INFO Closing log for application name SRPRISM version 3.0.0
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