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misnomer001

Steppe_EMBA = EHG + CHG + Tarim + Sarazm pass

misnomer001
Aug 20th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: fstatsa5.txt
  5. popleft: left
  6. popright: right
  7. details: YES
  8. allsnps: YES
  9. inbreed: NO
  10. oldallsnps: NO
  11. ## qpAdm version: 1520
  12. seed: 2125501353
  13. inbreed set NO
  14. inbreed set NO
  15.  
  16. left pops:
  17. Steppe_EMBA
  18. EHG
  19. CHG_Kotias
  20. Tarim_EMBA1
  21. Tajikistan_C_Sarazm
  22.  
  23. right pops:
  24. Mbuti.DG
  25. ONG.SG
  26. CHG_Satsurblia
  27. Serbia_IronGates_Mesolithic
  28. Russia_Khvalynsk_Eneolithic
  29. Russia_Shamanka_Eneolithic.SG
  30. PPN
  31. Iran_GanjDareh_N
  32. Turkey_N
  33. WSHG
  34.  
  35. codimension 1
  36. f4info:
  37. f4rank: 3 dof: 6 chisq: 8.444 tail: 0.207316445 dofdiff: 8 chisqdiff: -8.444 taildiff: 1
  38. B:
  39. scale 1.000 1.000 1.000
  40. ONG.SG 0.435 -0.657 0.427
  41. CHG_Satsurblia -1.014 0.409 2.386
  42. Serbia_IronGates_Mesolithic 0.844 2.207 -0.341
  43. Russia_Khvalynsk_Eneolithic 1.393 0.961 0.215
  44. Russia_Shamanka_Eneolithic.SG 0.838 -0.987 1.046
  45. PPN -0.172 0.571 -0.334
  46. Iran_GanjDareh_N -0.536 -0.361 -0.952
  47. Turkey_N -0.190 0.784 -0.372
  48. WSHG 2.019 -0.747 0.844
  49. A:
  50. scale 214.663 644.641 1030.402
  51. EHG 0.433 1.498 -0.070
  52. CHG_Kotias -1.571 0.508 1.499
  53. Tarim_EMBA1 0.569 -1.112 0.535
  54. Tajikistan_C_Sarazm -1.009 -0.510 -1.209
  55.  
  56.  
  57. full rank
  58. f4info:
  59. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 6 chisqdiff: 8.444 taildiff: 0.207316445
  60. B:
  61. scale 335.433 135.173 312.177 189.005
  62. ONG.SG -0.230 -0.423 0.770 -0.424
  63. CHG_Satsurblia -0.558 1.479 -0.786 0.188
  64. Serbia_IronGates_Mesolithic 2.226 -0.697 -0.627 -1.081
  65. Russia_Khvalynsk_Eneolithic 1.621 -1.258 0.575 -1.514
  66. Russia_Shamanka_Eneolithic.SG -0.245 -0.726 1.386 -0.866
  67. PPN 0.264 0.128 -0.594 0.066
  68. Iran_GanjDareh_N -0.700 0.277 -0.489 0.654
  69. Turkey_N 0.389 0.159 -0.752 0.035
  70. WSHG 0.533 -1.980 1.996 -2.035
  71. A:
  72. scale 2.000 2.000 2.000 2.000
  73. EHG 2.000 0.000 0.000 0.000
  74. CHG_Kotias 0.000 2.000 0.000 0.000
  75. Tarim_EMBA1 0.000 0.000 2.000 0.000
  76. Tajikistan_C_Sarazm 0.000 0.000 0.000 2.000
  77.  
  78.  
  79. best coefficients: 0.327 0.073 0.366 0.234
  80. totmean: 0.327 0.073 0.366 0.234
  81. boot mean: 0.327 0.073 0.366 0.234
  82. std. errors: 0.018 0.028 0.020 0.035
  83.  
  84. error covariance (* 1,000,000)
  85. 321 -112 -269 60
  86. -112 797 234 -919
  87. -269 234 401 -366
  88. 60 -919 -366 1225
  89.  
  90.  
  91. summ: Steppe_EMBA 4 0.207316 0.327 0.073 0.366 0.234 321 -112 -269 60 797 ...
  92. 234 -919 401 -366 1225
  93.  
  94. fixed pat wt dof chisq tail prob
  95. 0000 0 6 8.444 0.207316 0.327 0.073 0.366 0.234
  96. 0001 1 7 50.657 1.07295e-08 0.308 0.251 0.441 0.000
  97. 0010 1 7 200.783 0 0.478 -0.813 0.000 1.335 infeasible
  98. 0100 1 7 15.874 0.0262969 0.334 0.000 0.349 0.317
  99. 1000 1 7 244.543 0 0.000 1.698 0.995 -1.693 infeasible
  100. 0011 2 8 474.482 0 0.698 0.302 0.000 0.000
  101. 0101 2 8 544.256 0 0.446 0.000 0.554 0.000
  102. 0110 2 8 274.839 0 0.579 0.000 0.000 0.421
  103. 1001 2 8 309.565 0 0.000 0.322 0.678 0.000
  104. 1010 2 8 273.129 0 0.000 -2.717 0.000 3.717 infeasible
  105. 1100 2 8 338.700 0 0.000 0.000 0.604 0.396
  106. 0111 3 9 924.280 0 1.000 0.000 0.000 0.000
  107. 1011 3 9 1795.900 0 0.000 1.000 0.000 0.000
  108. 1101 3 9 953.040 0 0.000 0.000 1.000 0.000
  109. 1110 3 9 1122.827 0 0.000 0.000 0.000 1.000
  110. best pat: 0000 0.207316 - -
  111. best pat: 0100 0.0262969 chi(nested): 7.429 p-value for nested model: 0.00641764
  112. best pat: 0110 9.2271e-55 chi(nested): 258.965 p-value for nested model: 2.88481e-58
  113. best pat: 0111 3.62725e-193 chi(nested): 649.441 p-value for nested model: 2.96028e-143
  114.  
  115. coeffs: 0.327 0.073 0.366 0.234
  116.  
  117. ## dscore:: f_4(Base, Fit, Rbase, right2)
  118. ## genstat:: f_4(Base, Fit, right1, right2)
  119.  
  120. details: EHG ONG.SG -0.000685 -2.121914
  121. details: CHG_Kotias ONG.SG -0.003126 -6.808337
  122. details: Tarim_EMBA1 ONG.SG 0.002465 7.785390
  123. details: Tajikistan_C_Sarazm ONG.SG -0.002242 -5.409263
  124. dscore: ONG.SG f4: -0.000072 Z: -0.279446
  125.  
  126. details: EHG CHG_Satsurblia -0.001663 -3.913349
  127. details: CHG_Kotias CHG_Satsurblia 0.010943 15.216256
  128. details: Tarim_EMBA1 CHG_Satsurblia -0.002518 -6.313928
  129. details: Tajikistan_C_Sarazm CHG_Satsurblia 0.000996 1.799383
  130. dscore: CHG_Satsurblia f4: -0.000437 Z: -1.299358
  131.  
  132. details: EHG Serbia_IronGates_Mesolithic 0.006635 21.041269
  133. details: CHG_Kotias Serbia_IronGates_Mesolithic -0.005159 -11.493974
  134. details: Tarim_EMBA1 Serbia_IronGates_Mesolithic -0.002009 -6.615591
  135. details: Tajikistan_C_Sarazm Serbia_IronGates_Mesolithic -0.005718 -15.638141
  136. dscore: Serbia_IronGates_Mesolithic f4: -0.000278 Z: -1.148163
  137.  
  138. details: EHG Russia_Khvalynsk_Eneolithic 0.004833 11.444898
  139. details: CHG_Kotias Russia_Khvalynsk_Eneolithic -0.009308 -17.354261
  140. details: Tarim_EMBA1 Russia_Khvalynsk_Eneolithic 0.001843 4.537685
  141. details: Tajikistan_C_Sarazm Russia_Khvalynsk_Eneolithic -0.008008 -15.868405
  142. dscore: Russia_Khvalynsk_Eneolithic f4: -0.000292 Z: -0.889823
  143.  
  144. details: EHG Russia_Shamanka_Eneolithic.SG -0.000730 -2.272947
  145. details: CHG_Kotias Russia_Shamanka_Eneolithic.SG -0.005371 -12.406025
  146. details: Tarim_EMBA1 Russia_Shamanka_Eneolithic.SG 0.004440 14.016240
  147. details: Tajikistan_C_Sarazm Russia_Shamanka_Eneolithic.SG -0.004584 -11.954997
  148. dscore: Russia_Shamanka_Eneolithic.SG f4: -0.000074 Z: -0.291671
  149.  
  150. details: EHG PPN 0.000786 2.185259
  151. details: CHG_Kotias PPN 0.000949 1.975863
  152. details: Tarim_EMBA1 PPN -0.001902 -5.510423
  153. details: Tajikistan_C_Sarazm PPN 0.000350 0.848311
  154. dscore: PPN f4: -0.000289 Z: -1.036017
  155.  
  156. details: EHG Iran_GanjDareh_N -0.002086 -6.927607
  157. details: CHG_Kotias Iran_GanjDareh_N 0.002046 4.743462
  158. details: Tarim_EMBA1 Iran_GanjDareh_N -0.001568 -5.534622
  159. details: Tajikistan_C_Sarazm Iran_GanjDareh_N 0.003460 9.278470
  160. dscore: Iran_GanjDareh_N f4: -0.000300 Z: -1.311583
  161.  
  162. details: EHG Turkey_N 0.001160 4.179572
  163. details: CHG_Kotias Turkey_N 0.001173 2.964585
  164. details: Tarim_EMBA1 Turkey_N -0.002409 -8.784214
  165. details: Tajikistan_C_Sarazm Turkey_N 0.000183 0.554787
  166. dscore: Turkey_N f4: -0.000376 Z: -1.738362
  167.  
  168. details: EHG WSHG 0.001589 3.799445
  169. details: CHG_Kotias WSHG -0.014645 -27.324997
  170. details: Tarim_EMBA1 WSHG 0.006395 15.620963
  171. details: Tajikistan_C_Sarazm WSHG -0.010768 -21.559332
  172. dscore: WSHG f4: -0.000719 Z: -2.129230
  173.  
  174. gendstat: Mbuti.DG ONG.SG -0.279
  175. gendstat: Mbuti.DG CHG_Satsurblia -1.299
  176. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -1.148
  177. gendstat: Mbuti.DG Russia_Khvalynsk_Eneolithic -0.890
  178. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG -0.292
  179. gendstat: Mbuti.DG PPN -1.036
  180. gendstat: Mbuti.DG Iran_GanjDareh_N -1.312
  181. gendstat: Mbuti.DG Turkey_N -1.738
  182. gendstat: Mbuti.DG WSHG -2.129
  183. gendstat: ONG.SG CHG_Satsurblia -1.038
  184. gendstat: ONG.SG Serbia_IronGates_Mesolithic -0.798
  185. gendstat: ONG.SG Russia_Khvalynsk_Eneolithic -0.657
  186. gendstat: ONG.SG Russia_Shamanka_Eneolithic.SG -0.007
  187. gendstat: ONG.SG PPN -0.712
  188. gendstat: ONG.SG Iran_GanjDareh_N -0.872
  189. gendstat: ONG.SG Turkey_N -1.219
  190. gendstat: ONG.SG WSHG -1.877
  191. gendstat: CHG_Satsurblia Serbia_IronGates_Mesolithic 0.491
  192. gendstat: CHG_Satsurblia Russia_Khvalynsk_Eneolithic 0.375
  193. gendstat: CHG_Satsurblia Russia_Shamanka_Eneolithic.SG 1.036
  194. gendstat: CHG_Satsurblia PPN 0.423
  195. gendstat: CHG_Satsurblia Iran_GanjDareh_N 0.438
  196. gendstat: CHG_Satsurblia Turkey_N 0.203
  197. gendstat: CHG_Satsurblia WSHG -0.692
  198. gendstat: Serbia_IronGates_Mesolithic Russia_Khvalynsk_Eneolithic -0.053
  199. gendstat: Serbia_IronGates_Mesolithic Russia_Shamanka_Eneolithic.SG 0.781
  200. gendstat: Serbia_IronGates_Mesolithic PPN -0.045
  201. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N -0.090
  202. gendstat: Serbia_IronGates_Mesolithic Turkey_N -0.545
  203. gendstat: Serbia_IronGates_Mesolithic WSHG -1.412
  204. gendstat: Russia_Khvalynsk_Eneolithic Russia_Shamanka_Eneolithic.SG 0.674
  205. gendstat: Russia_Khvalynsk_Eneolithic PPN 0.010
  206. gendstat: Russia_Khvalynsk_Eneolithic Iran_GanjDareh_N -0.023
  207. gendstat: Russia_Khvalynsk_Eneolithic Turkey_N -0.285
  208. gendstat: Russia_Khvalynsk_Eneolithic WSHG -1.315
  209. gendstat: Russia_Shamanka_Eneolithic.SG PPN -0.723
  210. gendstat: Russia_Shamanka_Eneolithic.SG Iran_GanjDareh_N -0.870
  211. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N -1.241
  212. gendstat: Russia_Shamanka_Eneolithic.SG WSHG -2.032
  213. gendstat: PPN Iran_GanjDareh_N -0.040
  214. gendstat: PPN Turkey_N -0.422
  215. gendstat: PPN WSHG -1.152
  216. gendstat: Iran_GanjDareh_N Turkey_N -0.370
  217. gendstat: Iran_GanjDareh_N WSHG -1.239
  218. gendstat: Turkey_N WSHG -1.066
  219.  
  220. ##end of qpAdm: 15.884 seconds cpu 1.077 Mbytes in use
  221.  
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