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Phlya

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Jan 18th, 2018
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  1. ERROR ~ Error executing process > 'bin_library_pairs (library:senescent_2 resolution:1000)'
  2.  
  3. Caused by:
  4.   Process `bin_library_pairs (library:senescent_2 resolution:1000)` terminated with an error exit status (1)
  5.  
  6. Command executed:
  7.  
  8.   cooler cload pairix         --nproc 8         --assembly hg19         chrfile.txt:1000 senescent_2.nodups.pairs.gz senescent_2.1000.cool
  9.  
  10.   cooler balance --nproc 8  senescent_2.1000.cool
  11.  
  12. Command exit status:
  13.   1
  14.  
  15. Command output:
  16.   (empty)
  17.  
  18. Command error:
  19.   + cooler cload pairix --nproc 8 --assembly hg19 chrfile.txt:1000 senescent_2.nodups.pairs.gz senescent_2.1000.cool
  20.   Traceback (most recent call last):
  21.     File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/bin/cooler", line 11, in <module>
  22.       sys.exit(cli())
  23.     File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/click/core.py", line 722, in __call__
  24.       return self.main(*args, **kwargs)
  25.     File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/click/core.py", line 697, in main
  26.       rv = self.invoke(ctx)
  27.     File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/click/core.py", line 1066, in invoke
  28.       return _process_result(sub_ctx.command.invoke(sub_ctx))
  29.     File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/click/core.py", line 1066, in invoke
  30.       return _process_result(sub_ctx.command.invoke(sub_ctx))
  31.     File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/click/core.py", line 895, in invoke
  32.       return ctx.invoke(self.callback, **ctx.params)
  33.     File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/click/core.py", line 535, in invoke
  34.       return callback(*args, **kwargs)
  35.     File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/cooler/cli/cload.py", line 229, in pairix
  36.       chromsizes, bins = _parse_bins(bins)
  37.     File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/cooler/cli/cload.py", line 41, in _parse_bins
  38.       bins = util.binnify(chromsizes, binsize)
  39.     File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/cooler/util.py", line 261, in binnify
  40.       ignore_index=True)
  41.     File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/pandas/core/reshape/concat.py", line 212, in concat
  42.       copy=copy)
  43.     File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/pandas/core/reshape/concat.py", line 242, in __init__
  44.       objs = list(objs)
  45.     File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/cooler/util.py", line 249, in _each
  46.       n_bins = int(np.ceil(clen / binsize))
  47.   ValueError: cannot convert float NaN to integer
  48.   .command.run.1: line 99: 72023 Terminated              nxf_trace "$pid" .command.trace
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