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- ERROR ~ Error executing process > 'bin_library_pairs (library:senescent_2 resolution:1000)'
- Caused by:
- Process `bin_library_pairs (library:senescent_2 resolution:1000)` terminated with an error exit status (1)
- Command executed:
- cooler cload pairix --nproc 8 --assembly hg19 chrfile.txt:1000 senescent_2.nodups.pairs.gz senescent_2.1000.cool
- cooler balance --nproc 8 senescent_2.1000.cool
- Command exit status:
- 1
- Command output:
- (empty)
- Command error:
- + cooler cload pairix --nproc 8 --assembly hg19 chrfile.txt:1000 senescent_2.nodups.pairs.gz senescent_2.1000.cool
- Traceback (most recent call last):
- File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/bin/cooler", line 11, in <module>
- sys.exit(cli())
- File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/click/core.py", line 722, in __call__
- return self.main(*args, **kwargs)
- File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/click/core.py", line 697, in main
- rv = self.invoke(ctx)
- File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/click/core.py", line 1066, in invoke
- return _process_result(sub_ctx.command.invoke(sub_ctx))
- File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/click/core.py", line 1066, in invoke
- return _process_result(sub_ctx.command.invoke(sub_ctx))
- File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/click/core.py", line 895, in invoke
- return ctx.invoke(self.callback, **ctx.params)
- File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/click/core.py", line 535, in invoke
- return callback(*args, **kwargs)
- File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/cooler/cli/cload.py", line 229, in pairix
- chromsizes, bins = _parse_bins(bins)
- File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/cooler/cli/cload.py", line 41, in _parse_bins
- bins = util.binnify(chromsizes, binsize)
- File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/cooler/util.py", line 261, in binnify
- ignore_index=True)
- File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/pandas/core/reshape/concat.py", line 212, in concat
- copy=copy)
- File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/pandas/core/reshape/concat.py", line 242, in __init__
- objs = list(objs)
- File "/exports/igmm/eddie/wendy-lab/ilia/condaenvs/Hi-C/lib/python3.6/site-packages/cooler/util.py", line 249, in _each
- n_bins = int(np.ceil(clen / binsize))
- ValueError: cannot convert float NaN to integer
- .command.run.1: line 99: 72023 Terminated nxf_trace "$pid" .command.trace
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