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- allsnps: YES
- ## qpAdm version: 810
- seed: 1872601719
- left pops:
- Saidu_Sharif_H
- Swat_InPe
- Kazakhstan_Kangju.SG
- right pops:
- Kazakhstan_Botai.SG
- Ganj_Dareh_N
- PPN
- Anatolia_N
- Iberia_MN
- Russia_MA1.SG
- CHG
- Kostenki14.SG
- EEHG
- WEHG
- WSHG
- Onge.DG
- Russia_Shamanka_EN.SG
- Ethiopia_4500BP.SG
- 0 Saidu_Sharif_H 10
- 1 Swat_InPe 8
- 2 Kazakhstan_Kangju.SG 6
- 3 Kazakhstan_Botai.SG 3
- 4 Ganj_Dareh_N 7
- 5 PPN 8
- 6 Anatolia_N 22
- 7 Iberia_MN 4
- 8 Russia_MA1.SG 1
- 9 CHG 2
- 10 Kostenki14.SG 1
- 11 EEHG 4
- 12 WEHG 36
- 13 WSHG 3
- 14 Onge.DG 2
- 15 Russia_Shamanka_EN.SG 10
- 16 Ethiopia_4500BP.SG 1
- jackknife block size: 0.050
- snps: 1150477 indivs: 128
- number of blocks for block jackknife: 552
- ## ncols: 1150477
- coverage: Saidu_Sharif_H 1107970
- coverage: Swat_InPe 1019932
- coverage: Kazakhstan_Kangju.SG 1117223
- coverage: Kazakhstan_Botai.SG 1149870
- coverage: Ganj_Dareh_N 1029695
- coverage: PPN 835499
- coverage: Anatolia_N 1134099
- coverage: Iberia_MN 967760
- coverage: Russia_MA1.SG 805960
- coverage: CHG 1149558
- coverage: Kostenki14.SG 1048972
- coverage: EEHG 1029995
- coverage: WEHG 1141246
- coverage: WSHG 858019
- coverage: Onge.DG 1120748
- coverage: Russia_Shamanka_EN.SG 1149998
- coverage: Ethiopia_4500BP.SG 1149598
- dof (jackknife): 470.146
- numsnps used: 1150477
- codimension 1
- f4info:
- f4rank: 1 dof: 12 chisq: 13.503 tail: 0.333529988 dofdiff: 14 chisqdiff: -13.503 taildiff: 1
- B:
- scale 1.000
- Ganj_Dareh_N 1.732
- PPN 0.262
- Anatolia_N -0.056
- Iberia_MN -0.094
- Russia_MA1.SG 0.213
- CHG 0.453
- Kostenki14.SG 0.777
- EEHG -0.348
- WEHG -0.688
- WSHG 0.205
- Onge.DG 2.187
- Russia_Shamanka_EN.SG 1.218
- Ethiopia_4500BP.SG 1.470
- A:
- scale 920.077
- Swat_InPe 0.524
- Kazakhstan_Kangju.SG -1.314
- full rank
- f4info:
- f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 13.503 taildiff: 0.333529988
- B:
- scale 1.000 1.000
- Ganj_Dareh_N 1.724 0.109
- PPN 0.288 0.252
- Anatolia_N -0.032 1.070
- Iberia_MN -0.079 1.146
- Russia_MA1.SG 0.227 0.831
- CHG 0.461 0.146
- Kostenki14.SG 0.777 -0.380
- EEHG -0.333 0.302
- WEHG -0.669 1.991
- WSHG 0.220 0.499
- Onge.DG 2.207 0.408
- Russia_Shamanka_EN.SG 1.200 -1.151
- Ethiopia_4500BP.SG 1.468 -1.953
- A:
- scale 893.550 7546.192
- Swat_InPe 0.410 -1.117
- Kazakhstan_Kangju.SG -1.353 -0.868
- best coefficients: 0.715 0.285
- Jackknife mean: 0.714769669 0.285230331
- std. errors: 0.023 0.023
- error covariance (* 1000000)
- 548 -548
- -548 548
- summ: Saidu_Sharif_H 2 0.333530 0.715 0.285 548 -548 548
- fixed pat wt dof chisq tail prob
- 00 0 12 13.503 0.33353 0.715 0.285
- 01 1 13 135.992 1.33385e-22 1.000 -0.000
- 10 1 13 423.723 0 0.000 1.000
- best pat: 00 0.33353 - -
- best pat: 01 1.33385e-22 chi(nested): 122.489 p-value for nested model: 1.8042e-28
- coeffs: 0.715 0.285
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Swat_InPe Ganj_Dareh_N 0.000744 3.996994
- details: Kazakhstan_Kangju.SG Ganj_Dareh_N -0.002653 -11.638755
- dscore: Ganj_Dareh_N f4: -0.000224 Z: -1.391916
- details: Swat_InPe PPN 0.000058 0.311751
- details: Kazakhstan_Kangju.SG PPN -0.000505 -2.322892
- dscore: PPN f4: -0.000103 Z: -0.638864
- details: Swat_InPe Anatolia_N -0.000204 -1.295520
- details: Kazakhstan_Kangju.SG Anatolia_N -0.000112 -0.522678
- dscore: Anatolia_N f4: -0.000178 Z: -1.244582
- details: Swat_InPe Iberia_MN -0.000240 -1.388523
- details: Kazakhstan_Kangju.SG Iberia_MN -0.000048 -0.219649
- dscore: Iberia_MN f4: -0.000185 Z: -1.221224
- details: Swat_InPe Russia_MA1.SG -0.000054 -0.268193
- details: Kazakhstan_Kangju.SG Russia_MA1.SG -0.000476 -2.001677
- dscore: Russia_MA1.SG f4: -0.000174 Z: -0.967374
- details: Swat_InPe CHG 0.000147 0.721573
- details: Kazakhstan_Kangju.SG CHG -0.000759 -2.944602
- dscore: CHG f4: -0.000111 Z: -0.616597
- details: Swat_InPe Kostenki14.SG 0.000382 1.780248
- details: Kazakhstan_Kangju.SG Kostenki14.SG -0.001166 -4.199876
- dscore: Kostenki14.SG f4: -0.000059 Z: -0.314862
- details: Swat_InPe EEHG -0.000227 -1.415024
- details: Kazakhstan_Kangju.SG EEHG 0.000440 2.123516
- dscore: EEHG f4: -0.000037 Z: -0.262150
- details: Swat_InPe WEHG -0.000620 -4.027585
- details: Kazakhstan_Kangju.SG WEHG 0.000758 3.723543
- dscore: WEHG f4: -0.000227 Z: -1.696374
- details: Swat_InPe WSHG 0.000005 0.032550
- details: Kazakhstan_Kangju.SG WSHG -0.000412 -2.255583
- dscore: WSHG f4: -0.000114 Z: -0.892592
- details: Swat_InPe Onge.DG 0.000937 4.719057
- details: Kazakhstan_Kangju.SG Onge.DG -0.003413 -13.552142
- dscore: Onge.DG f4: -0.000303 Z: -1.679161
- details: Swat_InPe Russia_Shamanka_EN.SG 0.000697 4.201581
- details: Kazakhstan_Kangju.SG Russia_Shamanka_EN.SG -0.001709 -8.187979
- dscore: Russia_Shamanka_EN.SG f4: 0.000011 Z: 0.072940
- details: Swat_InPe Ethiopia_4500BP.SG 0.000949 4.444351
- details: Kazakhstan_Kangju.SG Ethiopia_4500BP.SG -0.002027 -7.626591
- dscore: Ethiopia_4500BP.SG f4: 0.000101 Z: 0.529806
- gendstat: Kazakhstan_Botai.SG Ganj_Dareh_N -1.392
- gendstat: Kazakhstan_Botai.SG PPN -0.639
- gendstat: Kazakhstan_Botai.SG Anatolia_N -1.245
- gendstat: Kazakhstan_Botai.SG Iberia_MN -1.221
- gendstat: Kazakhstan_Botai.SG Russia_MA1.SG -0.967
- gendstat: Kazakhstan_Botai.SG CHG -0.617
- gendstat: Kazakhstan_Botai.SG Kostenki14.SG -0.315
- gendstat: Kazakhstan_Botai.SG EEHG -0.262
- gendstat: Kazakhstan_Botai.SG WEHG -1.696
- gendstat: Kazakhstan_Botai.SG WSHG -0.893
- gendstat: Kazakhstan_Botai.SG Onge.DG -1.679
- gendstat: Kazakhstan_Botai.SG Russia_Shamanka_EN.SG 0.073
- gendstat: Kazakhstan_Botai.SG Ethiopia_4500BP.SG 0.530
- gendstat: Ganj_Dareh_N PPN 0.766
- gendstat: Ganj_Dareh_N Anatolia_N 0.354
- gendstat: Ganj_Dareh_N Iberia_MN 0.243
- gendstat: Ganj_Dareh_N Russia_MA1.SG 0.243
- gendstat: Ganj_Dareh_N CHG 0.706
- gendstat: Ganj_Dareh_N Kostenki14.SG 0.861
- gendstat: Ganj_Dareh_N EEHG 1.116
- gendstat: Ganj_Dareh_N WEHG -0.016
- gendstat: Ganj_Dareh_N WSHG 0.626
- gendstat: Ganj_Dareh_N Onge.DG -0.434
- gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG 1.400
- gendstat: Ganj_Dareh_N Ethiopia_4500BP.SG 1.788
- gendstat: PPN Anatolia_N -0.629
- gendstat: PPN Iberia_MN -0.555
- gendstat: PPN Russia_MA1.SG -0.339
- gendstat: PPN CHG -0.050
- gendstat: PPN Kostenki14.SG 0.223
- gendstat: PPN EEHG 0.360
- gendstat: PPN WEHG -0.827
- gendstat: PPN WSHG -0.065
- gendstat: PPN Onge.DG -1.066
- gendstat: PPN Russia_Shamanka_EN.SG 0.646
- gendstat: PPN Ethiopia_4500BP.SG 1.097
- gendstat: Anatolia_N Iberia_MN -0.067
- gendstat: Anatolia_N Russia_MA1.SG 0.017
- gendstat: Anatolia_N CHG 0.450
- gendstat: Anatolia_N Kostenki14.SG 0.705
- gendstat: Anatolia_N EEHG 0.910
- gendstat: Anatolia_N WEHG -0.451
- gendstat: Anatolia_N WSHG 0.406
- gendstat: Anatolia_N Onge.DG -0.782
- gendstat: Anatolia_N Russia_Shamanka_EN.SG 1.304
- gendstat: Anatolia_N Ethiopia_4500BP.SG 1.745
- gendstat: Iberia_MN Russia_MA1.SG 0.052
- gendstat: Iberia_MN CHG 0.427
- gendstat: Iberia_MN Kostenki14.SG 0.705
- gendstat: Iberia_MN EEHG 0.855
- gendstat: Iberia_MN WEHG -0.340
- gendstat: Iberia_MN WSHG 0.413
- gendstat: Iberia_MN Onge.DG -0.640
- gendstat: Iberia_MN Russia_Shamanka_EN.SG 1.219
- gendstat: Iberia_MN Ethiopia_4500BP.SG 1.580
- gendstat: Russia_MA1.SG CHG 0.294
- gendstat: Russia_MA1.SG Kostenki14.SG 0.515
- gendstat: Russia_MA1.SG EEHG 0.706
- gendstat: Russia_MA1.SG WEHG -0.276
- gendstat: Russia_MA1.SG WSHG 0.317
- gendstat: Russia_MA1.SG Onge.DG -0.561
- gendstat: Russia_MA1.SG Russia_Shamanka_EN.SG 0.896
- gendstat: Russia_MA1.SG Ethiopia_4500BP.SG 1.154
- gendstat: CHG Kostenki14.SG 0.247
- gendstat: CHG EEHG 0.401
- gendstat: CHG WEHG -0.683
- gendstat: CHG WSHG -0.015
- gendstat: CHG Onge.DG -0.951
- gendstat: CHG Russia_Shamanka_EN.SG 0.646
- gendstat: CHG Ethiopia_4500BP.SG 1.049
- gendstat: Kostenki14.SG EEHG 0.113
- gendstat: Kostenki14.SG WEHG -0.964
- gendstat: Kostenki14.SG WSHG -0.272
- gendstat: Kostenki14.SG Onge.DG -1.185
- gendstat: Kostenki14.SG Russia_Shamanka_EN.SG 0.375
- gendstat: Kostenki14.SG Ethiopia_4500BP.SG 0.781
- gendstat: EEHG WEHG -1.287
- gendstat: EEHG WSHG -0.482
- gendstat: EEHG Onge.DG -1.347
- gendstat: EEHG Russia_Shamanka_EN.SG 0.261
- gendstat: EEHG Ethiopia_4500BP.SG 0.682
- gendstat: WEHG WSHG 0.731
- gendstat: WEHG Onge.DG -0.416
- gendstat: WEHG Russia_Shamanka_EN.SG 1.629
- gendstat: WEHG Ethiopia_4500BP.SG 1.945
- gendstat: WSHG Onge.DG -0.969
- gendstat: WSHG Russia_Shamanka_EN.SG 0.728
- gendstat: WSHG Ethiopia_4500BP.SG 1.034
- gendstat: Onge.DG Russia_Shamanka_EN.SG 1.923
- gendstat: Onge.DG Ethiopia_4500BP.SG 2.142
- gendstat: Russia_Shamanka_EN.SG Ethiopia_4500BP.SG 0.516
- ## end of run
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