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- allsnps: YES
- ## qpAdm version: 1000
- seed: 1867374891
- read 1073741824 bytes
- read 2057898697 bytes
- packed geno read OK
- end of inpack
- left pops:
- Pakistan_H_SaiduSharif
- InPe_Native
- Kazakhstan_Kangju.SG
- right pops:
- Cameroon_SMA.DG
- EEHG
- WSHG
- PPN
- WEHG
- Anatolia_N
- Iran_GanjDareh_N
- Russia_Steppe_Eneolithic
- Russia_UstBelaya_Angara
- ONG.SG
- Botai
- 0 Pakistan_H_SaiduSharif 10
- 1 InPe_Native 4
- 2 Kazakhstan_Kangju.SG 6
- 3 Cameroon_SMA.DG 1
- 4 EEHG 5
- 5 WSHG 3
- 6 PPN 11
- 7 WEHG 33
- 8 Anatolia_N 22
- 9 Iran_GanjDareh_N 8
- 10 Russia_Steppe_Eneolithic 3
- 11 Russia_UstBelaya_Angara 8
- 12 ONG.SG 6
- 13 Botai 2
- jackknife block size: 0.050
- snps: 1150510 indivs: 122
- number of blocks for block jackknife: 713
- ## ncols: 1150510
- coverage: Pakistan_H_SaiduSharif 1107970
- coverage: InPe_Native 841356
- coverage: Kazakhstan_Kangju.SG 1117223
- coverage: Cameroon_SMA.DG 1140138
- coverage: EEHG 1052093
- coverage: WSHG 858019
- coverage: PPN 847771
- coverage: WEHG 1140599
- coverage: Anatolia_N 1139031
- coverage: Iran_GanjDareh_N 1057358
- coverage: Russia_Steppe_Eneolithic 1008226
- coverage: Russia_UstBelaya_Angara 1072574
- coverage: ONG.SG 1143397
- coverage: Botai 926654
- dof (jackknife): 620.066
- numsnps used: 1150510
- codimension 1
- f4info:
- f4rank: 1 dof: 9 chisq: 11.820 tail: 0.223629292 dofdiff: 11 chisqdiff: -11.820 taildiff: 1
- B:
- scale 1.000
- EEHG 1.379
- WSHG 0.846
- PPN 0.804
- WEHG 1.700
- Anatolia_N 1.300
- Iran_GanjDareh_N -0.222
- Russia_Steppe_Eneolithic 0.912
- Russia_UstBelaya_Angara -0.051
- ONG.SG -0.651
- Botai 0.923
- A:
- scale 669.100
- InPe_Native -0.689
- Kazakhstan_Kangju.SG 1.235
- full rank
- f4info:
- f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 11.820 taildiff: 0.223629292
- B:
- scale 753.767 575.507
- EEHG -1.294 1.400
- WSHG -0.789 0.896
- PPN -0.923 0.749
- WEHG -1.639 1.680
- Anatolia_N -1.352 1.242
- Iran_GanjDareh_N -0.200 -0.405
- Russia_Steppe_Eneolithic -1.013 0.854
- Russia_UstBelaya_Angara -0.198 -0.106
- ONG.SG 0.166 -0.830
- Botai -1.097 0.846
- A:
- scale 1.414 1.414
- InPe_Native 1.414 0.000
- Kazakhstan_Kangju.SG 0.000 1.414
- best coefficients: 0.642 0.358
- Jackknife mean: 0.641809369 0.358190631
- std. errors: 0.020 0.020
- error covariance (* 1,000,000)
- 410 -410
- -410 410
- summ: Pakistan_H_SaiduSharif 2 0.223629 0.642 0.358 410 -410 410
- fixed pat wt dof chisq tail prob
- 00 0 9 11.820 0.223629 0.642 0.358
- 01 1 10 217.224 0 1.000 0.000
- 10 1 10 559.538 0 0.000 1.000
- best pat: 00 0.223629 - -
- best pat: 01 4.07299e-41 chi(nested): 205.403 p-value for nested model: 1.38284e-46
- coeffs: 0.642 0.358
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: InPe_Native EEHG -0.001716 -7.079069
- details: Kazakhstan_Kangju.SG EEHG 0.002432 9.443782
- dscore: EEHG f4: -0.000231 Z: -1.243719
- details: InPe_Native WSHG -0.001047 -3.842526
- details: Kazakhstan_Kangju.SG WSHG 0.001556 6.322505
- dscore: WSHG f4: -0.000115 Z: -0.553427
- details: InPe_Native PPN -0.001224 -5.106519
- details: Kazakhstan_Kangju.SG PPN 0.001302 6.011165
- dscore: PPN f4: -0.000320 Z: -1.724482
- details: InPe_Native WEHG -0.002175 -9.234105
- details: Kazakhstan_Kangju.SG WEHG 0.002920 12.356718
- dscore: WEHG f4: -0.000350 Z: -1.969692
- details: InPe_Native Anatolia_N -0.001794 -8.220237
- details: Kazakhstan_Kangju.SG Anatolia_N 0.002158 10.209767
- dscore: Anatolia_N f4: -0.000379 Z: -2.251158
- details: InPe_Native Iran_GanjDareh_N -0.000266 -1.217107
- details: Kazakhstan_Kangju.SG Iran_GanjDareh_N -0.000704 -3.179295
- dscore: Iran_GanjDareh_N f4: -0.000423 Z: -2.477529
- details: InPe_Native Russia_Steppe_Eneolithic -0.001344 -5.782284
- details: Kazakhstan_Kangju.SG Russia_Steppe_Eneolithic 0.001484 6.743369
- dscore: Russia_Steppe_Eneolithic f4: -0.000331 Z: -1.900367
- details: InPe_Native Russia_UstBelaya_Angara -0.000262 -1.140576
- details: Kazakhstan_Kangju.SG Russia_UstBelaya_Angara -0.000184 -0.790318
- dscore: Russia_UstBelaya_Angara f4: -0.000234 Z: -1.304049
- details: InPe_Native ONG.SG 0.000221 0.926483
- details: Kazakhstan_Kangju.SG ONG.SG -0.001443 -5.967402
- dscore: ONG.SG f4: -0.000375 Z: -2.054145
- details: InPe_Native Botai -0.001455 -5.444381
- details: Kazakhstan_Kangju.SG Botai 0.001470 5.901905
- dscore: Botai f4: -0.000407 Z: -1.998355
- gendstat: Cameroon_SMA.DG EEHG -1.244
- gendstat: Cameroon_SMA.DG WSHG -0.553
- gendstat: Cameroon_SMA.DG PPN -1.724
- gendstat: Cameroon_SMA.DG WEHG -1.970
- gendstat: Cameroon_SMA.DG Anatolia_N -2.251
- gendstat: Cameroon_SMA.DG Iran_GanjDareh_N -2.478
- gendstat: Cameroon_SMA.DG Russia_Steppe_Eneolithic -1.900
- gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara -1.304
- gendstat: Cameroon_SMA.DG ONG.SG -2.054
- gendstat: Cameroon_SMA.DG Botai -1.998
- gendstat: EEHG WSHG 0.696
- gendstat: EEHG PPN -0.501
- gendstat: EEHG WEHG -0.883
- gendstat: EEHG Anatolia_N -1.020
- gendstat: EEHG Iran_GanjDareh_N -1.131
- gendstat: EEHG Russia_Steppe_Eneolithic -0.614
- gendstat: EEHG Russia_UstBelaya_Angara -0.021
- gendstat: EEHG ONG.SG -0.775
- gendstat: EEHG Botai -1.073
- gendstat: WSHG PPN -1.015
- gendstat: WSHG WEHG -1.376
- gendstat: WSHG Anatolia_N -1.494
- gendstat: WSHG Iran_GanjDareh_N -1.580
- gendstat: WSHG Russia_Steppe_Eneolithic -1.233
- gendstat: WSHG Russia_UstBelaya_Angara -0.661
- gendstat: WSHG ONG.SG -1.299
- gendstat: WSHG Botai -1.719
- gendstat: PPN WEHG -0.203
- gendstat: PPN Anatolia_N -0.471
- gendstat: PPN Iran_GanjDareh_N -0.622
- gendstat: PPN Russia_Steppe_Eneolithic -0.066
- gendstat: PPN Russia_UstBelaya_Angara 0.478
- gendstat: PPN ONG.SG -0.293
- gendstat: PPN Botai -0.453
- gendstat: WEHG Anatolia_N -0.258
- gendstat: WEHG Iran_GanjDareh_N -0.477
- gendstat: WEHG Russia_Steppe_Eneolithic 0.134
- gendstat: WEHG Russia_UstBelaya_Angara 0.722
- gendstat: WEHG ONG.SG -0.144
- gendstat: WEHG Botai -0.341
- gendstat: Anatolia_N Iran_GanjDareh_N -0.327
- gendstat: Anatolia_N Russia_Steppe_Eneolithic 0.327
- gendstat: Anatolia_N Russia_UstBelaya_Angara 0.948
- gendstat: Anatolia_N ONG.SG 0.021
- gendstat: Anatolia_N Botai -0.166
- gendstat: Iran_GanjDareh_N Russia_Steppe_Eneolithic 0.571
- gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara 1.126
- gendstat: Iran_GanjDareh_N ONG.SG 0.258
- gendstat: Iran_GanjDareh_N Botai 0.081
- gendstat: Russia_Steppe_Eneolithic Russia_UstBelaya_Angara 0.584
- gendstat: Russia_Steppe_Eneolithic ONG.SG -0.234
- gendstat: Russia_Steppe_Eneolithic Botai -0.442
- gendstat: Russia_UstBelaya_Angara ONG.SG -0.956
- gendstat: Russia_UstBelaya_Angara Botai -1.026
- gendstat: ONG.SG Botai -0.168
- ##end of qpAdm: 368.390 seconds cpu 1257.484 Mbytes in use
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