API tools faq
paste
Guest User

Untitled

a guest
Jul 16th, 2018
68
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 0.85 KB | None | 0 0
raw download clone embed print report
  1. deiros@hgsc-usrapp1:/data/rogers/drio_scratch/bb
  2. $ samtools view -f2 -F4 -h /data/rogers2/drio_scratch/gibbon/AWG_NLEU.00_000pA/AWG_NLEU.00_000pA.merged.bam | head -117970 | samtools view -S -F0x10 -F0x20 - | wc -l
  3. [samopen] SAM header is present: 17968 sequences.
  4. 60792
  5.  
  6. deiros@hgsc-usrapp1:/data/rogers/drio_scratch/bb
  7. $ samtools view -f2 -F4 -h /data/rogers2/drio_scratch/gibbon/AWG_NLEU.00_000pA/AWG_NLEU.00_000pA.merged.bam | head -117970 | samtools view -S -f0x10 -f0x20 - | wc -l
  8. [samopen] SAM header is present: 17968 sequences.
  9. 39208
  10.  
  11. deiros@hgsc-usrapp1:/data/rogers/drio_scratch/bb
  12. $ echo "60792 + 39208" | bc
  13. 100000
  14.  
  15. deiros@hgsc-usrapp1:/data/rogers/drio_scratch/bb
  16. $ samtools view -H /data/rogers2/drio_scratch/gibbon/AWG_NLEU.00_000pA/AWG_NLEU.00_000pA.merged.bam | wc -l
  17. 17970
Add Comment
Please, Sign In to add comment
Public Pastes
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!