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RafalSkolasinski

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Mar 31st, 2016
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  1. hpc05-rskolasinski:~> conda create -n bug35 python=3.5
  2. Fetching package metadata: ..........
  3. Solving package specifications: .........
  4.  
  5. Package plan for installation in environment /home/rskolasinski/miniconda3/envs/bug35:
  6.  
  7. The following NEW packages will be INSTALLED:
  8.  
  9.     openssl:    1.0.2g-0      defaults
  10.     pip:        8.1.1-py35_1  defaults
  11.     python:     3.5.1-0       defaults
  12.     readline:   6.2-2         defaults
  13.     setuptools: 20.3-py35_0   defaults
  14.     sqlite:     3.9.2-0       defaults
  15.     tk:         8.5.18-0      defaults
  16.     wheel:      0.29.0-py35_0 defaults
  17.     xz:         5.0.5-1       defaults
  18.     zlib:       1.2.8-0       defaults
  19.  
  20. Proceed ([y]/n)? y
  21.  
  22. Linking packages ...
  23. [      COMPLETE      ]|##########################################################################################################################################################################| 100%
  24. #
  25. # To activate this environment, use:
  26. # $ source activate bug35
  27. #
  28. # To deactivate this environment, use:
  29. # $ source deactivate
  30. #
  31. hpc05-rskolasinski:~> source activate bug35
  32. discarding /home/rskolasinski/miniconda3/bin from PATH
  33. prepending /home/rskolasinski/miniconda3/envs/bug35/bin to PATH
  34. (bug35)hpc05-rskolasinski:~> conda install -c basnijholt
  35. Error: too few arguments, must supply command line package specs or --file
  36. (bug35)hpc05-rskolasinski:~> conda install -c basnijholt kwant
  37. Fetching package metadata: ............
  38. Solving package specifications: .........
  39.  
  40. Package plan for installation in environment /home/rskolasinski/miniconda3/envs/bug35:
  41.  
  42. The following packages will be downloaded:
  43.  
  44.     package                    |            build
  45.     ---------------------------|-----------------
  46.     libgcc-4.8.5               |                1         922 KB  defaults
  47.     libgfortran-3.0            |                0         261 KB  defaults
  48.     mkl-11.3.1                 |                0       121.2 MB  defaults
  49.     ------------------------------------------------------------
  50.                                            Total:       122.3 MB
  51.  
  52. The following NEW packages will be INSTALLED:
  53.  
  54.     cloog:           0.18.0-0           defaults  
  55.     cycler:          0.10.0-py35_0      defaults  
  56.     cython:          0.23.5-py35_0      defaults  
  57.     fontconfig:      2.11.1-5           defaults  
  58.     freetype:        2.5.5-0            defaults  
  59.     gcc:             4.8.5-3            defaults  
  60.     gmp:             5.1.2-2            defaults  
  61.     isl:             0.12.2-0           defaults  
  62.     kwant:           1.2.2-py35_4       basnijholt
  63.     libgcc:          4.8.5-1            defaults  
  64.     libgfortran:     3.0-0              defaults  
  65.     libpng:          1.6.17-0           defaults  
  66.     libxml2:         2.9.2-0            defaults  
  67.     matplotlib:      1.5.1-np110py35_0  defaults  
  68.     metis:           5.1.0-3            basnijholt
  69.     mkl:             11.3.1-0           defaults  
  70.     mpc:             1.0.1-0            defaults  
  71.     mpfr:            3.1.2-0            defaults  
  72.     mumps_seq:       5.0.1-3            basnijholt
  73.     nose:            1.3.7-py35_0       defaults  
  74.     numpy:           1.10.4-py35_1      defaults  
  75.     openblas:        0.2.14-4           defaults  
  76.     pyparsing:       2.0.3-py35_0       defaults  
  77.     pyqt:            4.11.4-py35_1      defaults  
  78.     python-dateutil: 2.5.1-py35_0       defaults  
  79.     pytz:            2016.3-py35_0      defaults  
  80.     qt:              4.8.7-1            defaults  
  81.     scipy:           0.17.0-np110py35_2 defaults  
  82.     scotch:          6.0.4-3            basnijholt
  83.     sip:             4.16.9-py35_0      defaults  
  84.     six:             1.10.0-py35_0      defaults  
  85.     tinyarray:       1.1.0-py35_3       basnijholt
  86.  
  87. Proceed ([y]/n)? y
  88.  
  89. Fetching packages ...
  90. libgcc-4.8.5-1 100% |#######################################################################################################################################################| Time: 0:00:01 795.86 kB/s
  91. libgfortran-3. 100% |#######################################################################################################################################################| Time: 0:00:00 446.79 kB/s
  92. mkl-11.3.1-0.t 100% |#######################################################################################################################################################| Time: 0:02:24 878.78 kB/s
  93. Extracting packages ...
  94. [      COMPLETE      ]|##########################################################################################################################################################################| 100%
  95. Linking packages ...
  96. [      COMPLETE      ]|##########################################################################################################################################################################| 100%
  97. (bug35)hpc05-rskolasinski:~> conda list --explicit | grep bas
  98. https://conda.anaconda.org/basnijholt/linux-64/kwant-1.2.2-py35_4.tar.bz2
  99. https://conda.anaconda.org/basnijholt/linux-64/metis-5.1.0-3.tar.bz2
  100. https://conda.anaconda.org/basnijholt/linux-64/mumps_seq-5.0.1-3.tar.bz2
  101. https://conda.anaconda.org/basnijholt/linux-64/scotch-6.0.4-3.tar.bz2
  102. https://conda.anaconda.org/basnijholt/linux-64/tinyarray-1.1.0-py35_3.tar.bz2
  103. (bug35)hpc05-rskolasinski:~> python -c import ^C
  104. (bug35)hpc05-rskolasinski:~> python -c 'import kwant'
  105. Traceback (most recent call last):
  106.   File "/home/rskolasinski/miniconda3/envs/bug35/lib/python3.5/site-packages/kwant/__init__.py", line 14, in <module>
  107.     from . import _system
  108. ImportError: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by /home/rskolasinski/miniconda3/envs/bug35/lib/python3.5/site-packages/kwant/_system.cpython-35m-x86_64-linux-gnu.so)
  109.  
  110. During handling of the above exception, another exception occurred:
  111.  
  112. Traceback (most recent call last):
  113.  File "<string>", line 1, in <module>
  114.  File "/home/rskolasinski/miniconda3/envs/bug35/lib/python3.5/site-packages/kwant/__init__.py", line 22, in <module>
  115.    raise ImportError(msg)
  116. ImportError: Error importing Kwant:
  117.        You should not try to import Kwant from its source directory.
  118.        Please exit the Kwant source distribution directory, and relaunch
  119.        your Python intepreter from there.
  120. (bug35)hpc05-rskolasinski:~>
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